cluster # 4379

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Anopheles gambiae
cluster # 4379 cluster # 4379 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4379#0 length = 1088 sequences # 2

consensus_4379#1 length = 592 sequences # 1

consensusID : consensus_4379#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1088
fasta sequence

                              [CCGGTTTGTGTGTGTGAGAGAGTGTTTGTGCGTTAGTGAAGGTATCGCCAGACAAGCCGCCACTTCCGGAAGCACTTGCATTGCTGTTTCCTTTGCTTTTCCCGCACCCATTGTTGTTGTGTCGCTGTTGTGTGCGTGTGTATGTGTGTGGTCTGTACGTTTGATGAAGCATGTGCTCTGTCACGCTGTCACAGAAAGGAATGCCACAGAAAGGATACTACCACCAGAGATCGGCCTCGGTGTCGTCGGGTTCATCGAGCTTAGCAACCATTGGAGTAGGTAGCGCTGCTGCTGCTGGTAGTGTGGCAGTAGGAGGTGTAGCTGGTGGAGGAATAGTAGGTGGAAGTGGAGGATCAACGGTAACAGCAACAGCAGCAGCAGTAGGCAATTCCAACATGGTTTCGTTCATGCAGTCGCGAGGATACGGATCTCAAAGTGGGAATAGCATCAACAACTACCACGGTGTGTTCGACGGCAGTGCGGCGGAAACTGGCACCCCGCCCCTGCTCGATCTCTCCGAATTTCCCTCGCTCACGAACGCACGCGGTGGCCAGAACGATCAATCCCTGCCGCAGTCGAACGCGCTGCAACCGCCGGGCAGTAAACCGTACGTTGGCATGGTAAAACAACCGACGTCCGAACAGATTGCGTTTACGATGTCGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTGCGGCCAGCCAGGGCCTGCAGGGCGNTGCACCACCATCACCATCCGGACCATCACGGCGGCACGGACAGTTTGGGGGGCAAGGGTGCCGGCGGCAGCGGACAGGTGGGCNGTGCGGCAGGCATGGGCATGGACCTGCAGAGTGATTCCGGCAATTCCAACGTTAACATGGACAAAGGAGCAATGAAGCGAGGCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCCAGTATGGTGAACAACCAGTTCGGTATGGTGGGCCTGCTAACGTTCCTCCGGGCGGCGGAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTGAATCTGACCGCGGTGGA]

[+] EMBL BM582006             [CCGGTTTGTGTGTGTGAGAGAGTGTTTGTGCGTTAGTGAAGGTATCGCCAGACAAGCCGCCACTTCCGGAAGCACTTGCATTGCTGTTTCCTTTGCTTTTCCCGCACCCATTGTTGTTGTGTCGCTGTTGTGTGCGTGTGTATGTGTGTGGTCTGTACGTTTGATGAAGCATGTGCTCTGTCACGCTGTCACAGAAAGGAATGCCACAGAAAGGATACTACCACCAGAGATCGGCCTCGGTGTCGTCGGGTTCATCGAGCTTAGCAACCATTGGAGTAGGTAGCGCTGCTGCTGCTGGTAGTGTGGCAGTAGGAGGTGTAGCTGGTGGAGGAATAGTAGGTGGAAGTGGAGGATCAACGGTAACAGCAACAGCAGCAGCAGTAGGCAATTCCAACATGGTTTCGTTCATGCAGTCGCGAGGATACGGATCTCAAAGTGGGAATAGCATCAACAACTACCACGGTGTGTTCGACGGCAGTGCGGCGGAAACTGGCACCCCGCCCCTGCTCGATCTCTCCGAATTTCCCTCGCTCACGAACGCACGCGGTGGCCAGAACGATCAATCCCTGCCGCAGTCGAACGCGCTGCAACCGCCGGGCAGTAAACCGTACGTTGGCATGGTAAAACAACCGACGTCCGAACAGATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX625926             [                                                                                                                                                                                                                                                                                                                                                                         AACAGCAACAGCAGCAGNAGTAGGCAATTCCAACATGGTTTCGTTCATGCAGTCGCGAGGATACGGATCTCAAAGTGGGAATAGCATCAACAACTACCACGGTGTGTTCGACGGCAGTGCGGCGGAAACTGGCACCCCGCCCCTGCTCGATCTCTCCGAATTTCCCTCGCTCACGAACGCACGCGGTGGCCAGAACGATCAATCCCTGCCGCAGTCGAACGCGCTGCAACCGCCGGGCAGTAAACCGTACGTTGGCATGGTAAAACAACCGACGTCCGAACAGATTGCGTTTACGATGTCGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTGCGGCCAGCCAGGGCCTGCAGGGCGNTGCACCACCATCACCATCCGGACCATCACGGCGGCACGGACAGTTTGGGGGGCAAGGGTGCCGGCGGCAGCGGACAGGTGGGCNGTGCGGCAGGCATGGGCATGGACCTGCAGAGTGATTCCGGCAATTCCAACGTTAACATGGACAAAGGAGCAATGAAGCGAGGCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCCAGTATGGTGAACAACCAGTTCGGTATGGTGGGCCTGCTAACGTTCCTCCGGGCGGCGGAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTGAATCTGACCGCGGTGGA]




>consensus_4379#0
CCGGTTTGTGTGTGTGAGAGAGTGTTTGTGCGTTAGTGAAGGTATCGCCAGACAAGCCGC
CACTTCCGGAAGCACTTGCATTGCTGTTTCCTTTGCTTTTCCCGCACCCATTGTTGTTGT
GTCGCTGTTGTGTGCGTGTGTATGTGTGTGGTCTGTACGTTTGATGAAGCATGTGCTCTG
TCACGCTGTCACAGAAAGGAATGCCACAGAAAGGATACTACCACCAGAGATCGGCCTCGG
TGTCGTCGGGTTCATCGAGCTTAGCAACCATTGGAGTAGGTAGCGCTGCTGCTGCTGGTA
GTGTGGCAGTAGGAGGTGTAGCTGGTGGAGGAATAGTAGGTGGAAGTGGAGGATCAACGG
TAACAGCAACAGCAGCAGCAGTAGGCAATTCCAACATGGTTTCGTTCATGCAGTCGCGAG
GATACGGATCTCAAAGTGGGAATAGCATCAACAACTACCACGGTGTGTTCGACGGCAGTG
CGGCGGAAACTGGCACCCCGCCCCTGCTCGATCTCTCCGAATTTCCCTCGCTCACGAACG
CACGCGGTGGCCAGAACGATCAATCCCTGCCGCAGTCGAACGCGCTGCAACCGCCGGGCA
GTAAACCGTACGTTGGCATGGTAAAACAACCGACGTCCGAACAGATTGCGTTTACGATGT
CGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTG
CGGCCAGCCAGGGCCTGCAGGGCGNTGCACCACCATCACCATCCGGACCATCACGGCGGC
ACGGACAGTTTGGGGGGCAAGGGTGCCGGCGGCAGCGGACAGGTGGGCNGTGCGGCAGGC
ATGGGCATGGACCTGCAGAGTGATTCCGGCAATTCCAACGTTAACATGGACAAAGGAGCA
ATGAAGCGAGGCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCCAGTATG
GTGAACAACCAGTTCGGTATGGTGGGCCTGCTAACGTTCCTCCGGGCGGCGGAAACGGAT
CCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTGAATCTGACC
GCGGTGGA

consensusID : consensus_4379#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence

                              [GAATNCCCCGAGTTCAGTTGGCATGTAAACAACCGACGTCGAACAGATTGCGTTTACGATGTCGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTGCGGCCAGCCAGNGGCCTGCAGGGCGTGCACCATCATCACCATCCGGACCATCACGGCGGCACGGACAGTTTGGGTGGGCAANGTGTGCCGGCGGCAGCGGACAGGTGGGCAGTGCGGCAGGCATGGTGCATGGACCTGCAGAGTGATTCCTGGCAATTCCAACGTTAACATGGACAAAGGAGCAATGAAGCGAGTGCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCCAGTATGGTTGAACAACCAGTTCGGTATTGGTGGGCCTGCTAACGTTCCTCCGGGCGGCTGGAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTGAATCTGACCGCGGTGGAAAACCTGTACCCGTGCTTTTGGCGGCCCTTCGCTGATGCGCCCGCGAGGCCTCAGGATATCGAGTACCCACGTACCACCAGAGTATTTGATCCA]

[+] EMBL AL932307             [GAATNCCCCGAGTTCAGTTGGCATGTAAACAACCGACGTCGAACAGATTGCGTTTACGATGTCGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTGCGGCCAGCCAGNGGCCTGCAGGGCGTGCACCATCATCACCATCCGGACCATCACGGCGGCACGGACAGTTTGGGTGGGCAANGTGTGCCGGCGGCAGCGGACAGGTGGGCAGTGCGGCAGGCATGGTGCATGGACCTGCAGAGTGATTCCTGGCAATTCCAACGTTAACATGGACAAAGGAGCAATGAAGCGAGTGCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCCAGTATGGTTGAACAACCAGTTCGGTATTGGTGGGCCTGCTAACGTTCCTCCGGGCGGCTGGAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTGAATCTGACCGCGGTGGAAAACCTGTACCCGTGCTTTTGGCGGCCCTTCGCTGATGCGCCCGCGAGGCCTCAGGATATCGAGTACCCACGTACCACCAGAGTATTTGATCCA]




>consensus_4379#1
GAATNCCCCGAGTTCAGTTGGCATGTAAACAACCGACGTCGAACAGATTGCGTTTACGAT
GTCGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGG
TGCGGCCAGCCAGNGGCCTGCAGGGCGTGCACCATCATCACCATCCGGACCATCACGGCG
GCACGGACAGTTTGGGTGGGCAANGTGTGCCGGCGGCAGCGGACAGGTGGGCAGTGCGGC
AGGCATGGTGCATGGACCTGCAGAGTGATTCCTGGCAATTCCAACGTTAACATGGACAAA
GGAGCAATGAAGCGAGTGCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGC
CAGTATGGTTGAACAACCAGTTCGGTATTGGTGGGCCTGCTAACGTTCCTCCGGGCGGCT
GGAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTT
GAATCTGACCGCGGTGGAAAACCTGTACCCGTGCTTTTGGCGGCCCTTCGCTGATGCGCC
CGCGAGGCCTCAGGATATCGAGTACCCACGTACCACCAGAGTATTTGATCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4379#0      CCGGTTTGTGTGTGTGAGAGAGTGTTTGTGCGTTAGTGAAGGTATCGCCAGACAAGCCGC 60
consensus_4379#1      ------------------------------------------------------------
                                                                                  

consensus_4379#0      CACTTCCGGAAGCACTTGCATTGCTGTTTCCTTTGCTTTTCCCGCACCCATTGTTGTTGT 120
consensus_4379#1      ------------------------------------------------------------
                                                                                  

consensus_4379#0      GTCGCTGTTGTGTGCGTGTGTATGTGTGTGGTCTGTACGTTTGATGAAGCATGTGCTCTG 180
consensus_4379#1      ------------------------------------------------------------
                                                                                  

consensus_4379#0      TCACGCTGTCACAGAAAGGAATGCCACAGAAAGGATACTACCACCAGAGATCGGCCTCGG 240
consensus_4379#1      ------------------------------------------------------------
                                                                                  

consensus_4379#0      TGTCGTCGGGTTCATCGAGCTTAGCAACCATTGGAGTAGGTAGCGCTGCTGCTGCTGGTA 300
consensus_4379#1      ------------------------------------------------------------
                                                                                  

consensus_4379#0      GTGTGGCAGTAGGAGGTGTAGCTGGTGGAGGAATAGTAGGTGGAAGTGGAGGATCAACGG 360
consensus_4379#1      ------------------------------------------------------------
                                                                                  

consensus_4379#0      TAACAGCAACAGCAGCAGCAGTAGGCAATTCCAACATGGTTTCGTTCATGCAGTCGCGAG 420
consensus_4379#1      ------------------------------------------------------------
                                                                                  

consensus_4379#0      GATACGGATCTCAAAGTGGGAATAGCATCAACAACTACCACGGTGTGTTCGACGGCAGTG 480
consensus_4379#1      ------------------------------------------------------------
                                                                                  

consensus_4379#0      CGGCGGAAACTGGCACCCCGCCCCTGCTCGATCTCTCCGAATTTCCCTCGCTCACGAACG 540
consensus_4379#1      ------------------------------------------------------------
                                                                                  

consensus_4379#0      CACGCGGTGGCCAGAACGATCAATCCCTGCCGCAGTCGAACGCGCTGCAACCGCCGGGCA 600
consensus_4379#1      -------------------------------------------------------GAATN 5
                                                                             *    

consensus_4379#0      GTAAACCGTACGTTGGCATGGTAAAACAACCGACGTCCGAACAGATTGCGTTTACGATGT 660
consensus_4379#1      CCCCGAGTTCAGTTGGCATG--TAAACAACCGACGTC-GAACAGATTGCGTTTACGATGT 62
                              *  *********   ************** **********************

consensus_4379#0      CGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTG 720
consensus_4379#1      CGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTG 122
                      ************************************************************

consensus_4379#0      CGGCCAGCCAGGG-CCTGCAGGGCGNTGCACCACCATCACCATCCGGACCATCACGGCGG 779
consensus_4379#1      CGGCCAGCCAGNGGCCTGCAGGGCGT-GCACCATCATCACCATCCGGACCATCACGGCGG 181
                      *********** * ***********  ****** **************************

consensus_4379#0      CACGGACAGTTTGGG-GGGCAAGG-GTGCCGGCGGCAGCGGACAGGTGGGCNGTGCGGCA 837
consensus_4379#1      CACGGACAGTTTGGGTGGGCAANGTGTGCCGGCGGCAGCGGACAGGTGGGCAGTGCGGCA 241
                      *************** ****** * ************************** ********

consensus_4379#0      GGCATGG-GCATGGACCTGCAGAGTGATTCC-GGCAATTCCAACGTTAACATGGACAAAG 895
consensus_4379#1      GGCATGGTGCATGGACCTGCAGAGTGATTCCTGGCAATTCCAACGTTAACATGGACAAAG 301
                      ******* *********************** ****************************

consensus_4379#0      GAGCAATGAAGCGAG-GCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCC 954
consensus_4379#1      GAGCAATGAAGCGAGTGCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCC 361
                      *************** ********************************************

consensus_4379#0      AGTATGGT-GAACAACCAGTTCGGTAT-GGTGGGCCTGCTAACGTTCCTCCGGGCGGC-G 1011
consensus_4379#1      AGTATGGTTGAACAACCAGTTCGGTATTGGTGGGCCTGCTAACGTTCCTCCGGGCGGCTG 421
                      ******** ****************** ****************************** *

consensus_4379#0      GAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTG 1071
consensus_4379#1      GAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTG 481
                      ************************************************************

consensus_4379#0      AATCTGACCGCGGTGGA------------------------------------------- 1088
consensus_4379#1      AATCTGACCGCGGTGGAAAACCTGTACCCGTGCTTTTGGCGGCCCTTCGCTGATGCGCCC 541
                      *****************                                           

consensus_4379#0      ---------------------------------------------------
consensus_4379#1      GCGAGGCCTCAGGATATCGAGTACCCACGTACCACCAGAGTATTTGATCCA 592