cluster # 4382

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Anopheles gambiae
cluster # 4382 cluster # 4382 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4382#0 length = 825 sequences # 2

consensus_4382#1 length = 571 sequences # 1

consensusID : consensus_4382#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 825
fasta sequence

                              [CCGGTGCGAGCGACGGTTCATGCGTAGCGACCATCTGTCGAAGCACGTCAAACGGCACAACAAGGACACGAGCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGCTGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGCGCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCAACCAGCGGCTCACCAGTTTGCCACCACCGTACAGCAAGCTTCGGTGTACTAAAGAGCGCGGTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCACGGTGAGGCTGCCAACCATTCCAGCTGTCTGAGGGGGAGAGGGGAAGGGTCAAAGAATGAGAGAGAGTGAGAGAGAGAGAGGGCAACGTGCGTTGGCGCCGTCAGCGGGACGGGATCCGTTTTATGAATTTTCCTCCTTCTCCAGTTAGGTTTAAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTAGCGCCCCACTATCTGTGATCGTTTTGTCTTACTAAACTACCGGACTACAAACTCTACGAACTACAAACAAGCAAACAAAAAAAAAAGCAAGGCAAGGCTAAGCCTAATCCCTTCTCACCCTTCTTAGCATACCCGGCTTAGCGTTGTAACTCTCTCTTATCCTTGTCACACAATCACTACTATATCTAGATATACTCTAGCAGTAAGGGAAGGGAGCTAGCAAGCCAGGGCTAAGGGAGAACAGTACTAGGAGAAACAGAAAAGAAGA]

[+] EMBL BM655768             [CCGGTGCGAGCGACGGTTCATGCGTAGCGACCATCTGTCGAAGCACGTCAAACGGCACAACAAGGACACGAGCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGCTGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGCGCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCAACCAGCGGCTCACCAGTTTGCCACCACCGTACAGCAAGCTTCGGTGTACTAAAGAGCGCGGTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCACGGTGAGGCTGCCAACCATTCCAGCTGTCTGAGGGGGAGAGGGGAAGGGTCAAAGAATGAGAGAGAGTGAGAGAGAGAGAGGGCAACGTGCGTTGGCGCCGTCAGCGGGACGGGATCCGTTTTATGAATTTTCCTCCTTCTCCAGTTAGGTTTAAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTAGCGCCCCACTATCTGTGATCGTTTTGTCTTACTAAACTACCGGACTACAAACTCTACG                                                                                                                                                                                                                  ]
[+] EMBL BM640864             [                                                                                                                                                                                                                                 ccgGGCCGTGTTTCAACCAGCGGCTCACCAGTTTGCCACCACCGTACAGCAAGCTTCGGTGTACTAAAGAGCGCGGTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCACGGTGAGGCTGCCAACCATTCCAGCTGTCTGAGGGGGAGAGGGGAAGGGTCAAAGAATGAGAGAGAGTGAGAGAGAGAGAGGGCAACGTGCGTTGGCGCCGTCAGCGGGACGGGATCCGTTTTATGAATTTTCCTCCTTCTCCAGTTAGGTTTAAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTAGCGCCCCACTATCTGTGATCGTTTTGTCTTACTAAACTACCGGACTACAAACTCTACGAACTACAAACAAGCAAACAAAAAAAAAAGCAAGGCAAGGCTAAGCCTAATCCCTTCTCACCCTTCTTAGCATACCCGGCTTAGCGTTGTAACTCTCTCTTATCCTTGTCACACAATCACTACTATATCTAGATATACTCTAGCAGTAAGGGAAGGGAGCTAGCAAGCCAGGGCTAAGGGAGAACAGTACTAGGAGAAACAGAAAAGAAGA]




>consensus_4382#0
CCGGTGCGAGCGACGGTTCATGCGTAGCGACCATCTGTCGAAGCACGTCAAACGGCACAA
CAAGGACACGAGCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGC
TGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGC
GCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCA
ACCAGCGGCTCACCAGTTTGCCACCACCGTACAGCAAGCTTCGGTGTACTAAAGAGCGCG
GTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCA
CGGTGAGGCTGCCAACCATTCCAGCTGTCTGAGGGGGAGAGGGGAAGGGTCAAAGAATGA
GAGAGAGTGAGAGAGAGAGAGGGCAACGTGCGTTGGCGCCGTCAGCGGGACGGGATCCGT
TTTATGAATTTTCCTCCTTCTCCAGTTAGGTTTAAACAATTCTTGCGCGTGTGGGCGTCC
CCCGGGAAGCGCCCTTAGCGCCCCACTATCTGTGATCGTTTTGTCTTACTAAACTACCGG
ACTACAAACTCTACGAACTACAAACAAGCAAACAAAAAAAAAAGCAAGGCAAGGCTAAGC
CTAATCCCTTCTCACCCTTCTTAGCATACCCGGCTTAGCGTTGTAACTCTCTCTTATCCT
TGTCACACAATCACTACTATATCTAGATATACTCTAGCAGTAAGGGAAGGGAGCTAGCAA
GCCAGGGCTAAGGGAGAACAGTACTAGGAGAAACAGAAAAGAAGA

consensusID : consensus_4382#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [GCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGCTGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGCGCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCAACCAGCGGCTCACCCGTTTGCCACCACCGTACAGCAAGCCTCGGTGTACTAAAGAGCGCGGTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCGCGGTGGGGCTGCCAACCATTCCAGCTATCTGAGGGGAAGAGGGGAAGGGTCAAAGAATGAGAGAGAGTGAGAGAGAGATTGAGCTCAGAGAAAGAGTGAGAGAGAGAGGACAACGTGCGTTGGCGCCGTCAGCGGGACGGGATCCGTTTCATGAATTTTCCTCCTTCTCCAGTTAGGTTTAAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTTGCGCCCCACTATCTGTGATCGTTTTGTCTTACTAAACTACCAGACTACAAACTCTACG]

[+] EMBL BX627105             [GCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGCTGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGCGCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCAACCAGCGGCTCACCCGTTTGCCACCACCGTACAGCAAGCCTCGGTGTACTAAAGAGCGCGGTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCGCGGTGGGGCTGCCAACCATTCCAGCTATCTGAGGGGAAGAGGGGAAGGGTCAAAGAATGAGAGAGAGTGAGAGAGAGATTGAGCTCAGAGAAAGAGTGAGAGAGAGAGGACAACGTGCGTTGGCGCCGTCAGCGGGACGGGATCCGTTTCATGAATTTTCCTCCTTCTCCAGTTAGGTTTAAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTTGCGCCCCACTATCTGTGATCGTTTTGTCTTACTAAACTACCAGACTACAAACTCTACG]




>consensus_4382#1
GCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGCTGCGAATGCAC
CGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGCGCGAACGGGTG
GTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCAACCAGCGGCTC
ACCCGTTTGCCACCACCGTACAGCAAGCCTCGGTGTACTAAAGAGCGCGGTGACGGCGGT
TGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCGCGGTGGGGCTG
CCAACCATTCCAGCTATCTGAGGGGAAGAGGGGAAGGGTCAAAGAATGAGAGAGAGTGAG
AGAGAGATTGAGCTCAGAGAAAGAGTGAGAGAGAGAGGACAACGTGCGTTGGCGCCGTCA
GCGGGACGGGATCCGTTTCATGAATTTTCCTCCTTCTCCAGTTAGGTTTAAACAATTCTT
GCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTTGCGCCCCACTATCTGTGATCGTTTTGT
CTTACTAAACTACCAGACTACAAACTCTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4382#0      CCGGTGCGAGCGACGGTTCATGCGTAGCGACCATCTGTCGAAGCACGTCAAACGGCACAA 60
consensus_4382#1      ------------------------------------------------------------
                                                                                  

consensus_4382#0      CAAGGACACGAGCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGC 120
consensus_4382#1      -----------GCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGC 49
                                 *************************************************

consensus_4382#0      TGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGC 180
consensus_4382#1      TGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGC 109
                      ************************************************************

consensus_4382#0      GCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCA 240
consensus_4382#1      GCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCA 169
                      ************************************************************

consensus_4382#0      ACCAGCGGCTCACCAGTTTGCCACCACCGTACAGCAAGCTTCGGTGTACTAAAGAGCGCG 300
consensus_4382#1      ACCAGCGGCTCACCCGTTTGCCACCACCGTACAGCAAGCCTCGGTGTACTAAAGAGCGCG 229
                      ************** ************************ ********************

consensus_4382#0      GTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCA 360
consensus_4382#1      GTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCG 289
                      *********************************************************** 

consensus_4382#0      CGGTGAGGCTGCCAACCATTCCAGCTGTCTGAGGGGGAGAGGGGAAGGGTCAAAGAATGA 420
consensus_4382#1      CGGTGGGGCTGCCAACCATTCCAGCTATCTGAGGGGAAGAGGGGAAGGGTCAAAGAATGA 349
                      ***** ******************** ********* ***********************

consensus_4382#0      GAGAGAGTGAGAGAGAGA---------------------------GAGGGCAACGTGCGT 453
consensus_4382#1      GAGAGAGTGAGAGAGAGATTGAGCTCAGAGAAAGAGTGAGAGAGAGAGGACAACGTGCGT 409
                      ******************                           **** **********

consensus_4382#0      TGGCGCCGTCAGCGGGACGGGATCCGTTTTATGAATTTTCCTCCTTCTCCAGTTAGGTTT 513
consensus_4382#1      TGGCGCCGTCAGCGGGACGGGATCCGTTTCATGAATTTTCCTCCTTCTCCAGTTAGGTTT 469
                      ***************************** ******************************

consensus_4382#0      AAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTAGCGCCCCACTATCTGT 573
consensus_4382#1      AAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTTGCGCCCCACTATCTGT 529
                      ******************************************* ****************

consensus_4382#0      GATCGTTTTGTCTTACTAAACTACCGGACTACAAACTCTACGAACTACAAACAAGCAAAC 633
consensus_4382#1      GATCGTTTTGTCTTACTAAACTACCAGACTACAAACTCTACG------------------ 571
                      ************************* ****************                  

consensus_4382#0      AAAAAAAAAAGCAAGGCAAGGCTAAGCCTAATCCCTTCTCACCCTTCTTAGCATACCCGG 693
consensus_4382#1      ------------------------------------------------------------
                                                                                  

consensus_4382#0      CTTAGCGTTGTAACTCTCTCTTATCCTTGTCACACAATCACTACTATATCTAGATATACT 753
consensus_4382#1      ------------------------------------------------------------
                                                                                  

consensus_4382#0      CTAGCAGTAAGGGAAGGGAGCTAGCAAGCCAGGGCTAAGGGAGAACAGTACTAGGAGAAA 813
consensus_4382#1      ------------------------------------------------------------
                                                                                  

consensus_4382#0      CAGAAAAGAAGA 825
consensus_4382#1      ------------