cluster # 439

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Anopheles gambiae
cluster # 439 cluster # 439 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_439#0 length = 952 sequences # 1

consensus_439#1 length = 731 sequences # 1

consensusID : consensus_439#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 952
fasta sequence

                              [GCAAGAATCCGCACGAGGCAGGAGAACGAGCCGGACAAGTCGCATGAAGCGCATGTGGGATTTAATGTTCGATGAAGCGCTGTTCAAGCATATGTGCTGGGTTGGATCTTCATCGAAAATTGCACTGCGCGATTATTACAACATCATCGATCTGTACAAGTACGGCGGCACTACCAACGTACACCGGGTAAATGACAATGAGGCGAGAAAGTTTTTATACAAAACCATGAAGTACGTGACAGACATGAGTTACCCAGAGAAATATTACGTGAAAAAGGCAGCGAATGCGAAATGTGGTAGCATTCGTAAACCAGCATCAAGAATGAGCTTAAACGTAAAGGAACAAAGCAGAGCAAAGCACCTACAGCAGGGTCAAAGCAAGCGACAGAATGAAATCGTTGAGCAGGAGGAGGATTGCTCGAATAAGAAAGATGGTTTGCAAAATGTACCTGAGCAACAATTACCAACGATTTGCGTAGGTTGCATAAAATCGGTAGAAGAATTGAATGCATTCGAAAACCGTTTAAATGACGAAAAAAGGCGAACGGAAATGCAAACGTGGGTCGACAAAACAGTCGGTCACGAGCCAAATGTGGAGCGTCGCATGGAGGCATTGCTGGAACGATTAATTGATACAAACATCTTACTCAACTTTTGCTGGGATGAACGTTAGCAAGTAGAAAAGGTGTACCGTTGTTAAAGTTCAAAAAACGTTGTCCCGACTGGTTTGAGTAACGGCTAGCAGAAACCAAAAGTTACACAACACGTATCCTCTATNACCATCCATTGGGTAATTGGTNTCCTAAGNATTCCTTTAATCCCGGAACGTTTTAGATTAACGTTGGGCGTTAAGAATAGGCGTTTCGTAACACAGGTATGGGATGGAAACTGGAAAAATTTAAAGTGTTGGTACCGTACGTTTAAGAGACNAAAGANAGAAAACANGGCATTT]

[+] EMBL BX467462             [GCAAGAATCCGCACGAGGCAGGAGAACGAGCCGGACAAGTCGCATGAAGCGCATGTGGGATTTAATGTTCGATGAAGCGCTGTTCAAGCATATGTGCTGGGTTGGATCTTCATCGAAAATTGCACTGCGCGATTATTACAACATCATCGATCTGTACAAGTACGGCGGCACTACCAACGTACACCGGGTAAATGACAATGAGGCGAGAAAGTTTTTATACAAAACCATGAAGTACGTGACAGACATGAGTTACCCAGAGAAATATTACGTGAAAAAGGCAGCGAATGCGAAATGTGGTAGCATTCGTAAACCAGCATCAAGAATGAGCTTAAACGTAAAGGAACAAAGCAGAGCAAAGCACCTACAGCAGGGTCAAAGCAAGCGACAGAATGAAATCGTTGAGCAGGAGGAGGATTGCTCGAATAAGAAAGATGGTTTGCAAAATGTACCTGAGCAACAATTACCAACGATTTGCGTAGGTTGCATAAAATCGGTAGAAGAATTGAATGCATTCGAAAACCGTTTAAATGACGAAAAAAGGCGAACGGAAATGCAAACGTGGGTCGACAAAACAGTCGGTCACGAGCCAAATGTGGAGCGTCGCATGGAGGCATTGCTGGAACGATTAATTGATACAAACATCTTACTCAACTTTTGCTGGGATGAACGTTAGCAAGTAGAAAAGGTGTACCGTTGTTAAAGTTCAAAAAACGTTGTCCCGACTGGTTTGAGTAACGGCTAGCAGAAACCAAAAGTTACACAACACGTATCCTCTATNACCATCCATTGGGTAATTGGTNTCCTAAGNATTCCTTTAATCCCGGAACGTTTTAGATTAACGTTGGGCGTTAAGAATAGGCGTTTCGTAACACAGGTATGGGATGGAAACTGGAAAAATTTAAAGTGTTGGTACCGTACGTTTAAGAGACNAAAGANAGAAAACANGGCATTT]




>consensus_439#0
GCAAGAATCCGCACGAGGCAGGAGAACGAGCCGGACAAGTCGCATGAAGCGCATGTGGGA
TTTAATGTTCGATGAAGCGCTGTTCAAGCATATGTGCTGGGTTGGATCTTCATCGAAAAT
TGCACTGCGCGATTATTACAACATCATCGATCTGTACAAGTACGGCGGCACTACCAACGT
ACACCGGGTAAATGACAATGAGGCGAGAAAGTTTTTATACAAAACCATGAAGTACGTGAC
AGACATGAGTTACCCAGAGAAATATTACGTGAAAAAGGCAGCGAATGCGAAATGTGGTAG
CATTCGTAAACCAGCATCAAGAATGAGCTTAAACGTAAAGGAACAAAGCAGAGCAAAGCA
CCTACAGCAGGGTCAAAGCAAGCGACAGAATGAAATCGTTGAGCAGGAGGAGGATTGCTC
GAATAAGAAAGATGGTTTGCAAAATGTACCTGAGCAACAATTACCAACGATTTGCGTAGG
TTGCATAAAATCGGTAGAAGAATTGAATGCATTCGAAAACCGTTTAAATGACGAAAAAAG
GCGAACGGAAATGCAAACGTGGGTCGACAAAACAGTCGGTCACGAGCCAAATGTGGAGCG
TCGCATGGAGGCATTGCTGGAACGATTAATTGATACAAACATCTTACTCAACTTTTGCTG
GGATGAACGTTAGCAAGTAGAAAAGGTGTACCGTTGTTAAAGTTCAAAAAACGTTGTCCC
GACTGGTTTGAGTAACGGCTAGCAGAAACCAAAAGTTACACAACACGTATCCTCTATNAC
CATCCATTGGGTAATTGGTNTCCTAAGNATTCCTTTAATCCCGGAACGTTTTAGATTAAC
GTTGGGCGTTAAGAATAGGCGTTTCGTAACACAGGTATGGGATGGAAACTGGAAAAATTT
AAAGTGTTGGTACCGTACGTTTAAGAGACNAAAGANAGAAAACANGGCATTT

consensusID : consensus_439#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 731
fasta sequence

                              [GTTTGAATGATCGCAACTTTCTGCAGAGGGTTCGCAGCTGGGTGAAGCGTATCGTTGCGCAGGAGAACGAGCCGGACAAGTGCATGAAGCGCATGTGGGACTTAATGTTCGATGAAGCGCTGTTCAAGCATATGTGCTGGGTTGGATCTTCATCGAAAATTGCACTGCGCGATTATTACAACATCATCGATCTGTACAAGTACGGCGGCACTACCAACGTACACCGGGTAAATGACAATGAGGCGAGAAAGTTTTTATACAAAACCATGAAGTACGTGACAGACATGAGTTACCCAGAGAAATACTACGTGAAAAAGGCAGCGAATGCGAAATGTGGTAGCATTCGTAAACCAGCATCAAGAATGAGCTTAAACGTGAAGGAACAAAGCAGAGCAAAGCACCTACAGCAGGGTCAAAGCAAGCGACAGAATGAAATCGTTGAGCAGGAGGAGGATTGCTCGAATAAGAAAGATGGTTTGCAAAATGTATCCGAGCAACAATTACCAACGATTTGCGTAGGTTGCATAAAATCGGTAGAAGAATTGAATGCATTCGAAAACCGTTTAAATGACAAAACAAGGCGAACGGAAATGGAAACGTGGGTCGACAAAACAGTCGGTCACGAGCCAAATGTGGAGCGTCGCATGGAGGCATTGCTGGAACGATTAATTGATACNAACATCTTACTCAACTTTTGCTGGATGAACGTTAGCAGTANAAAGTGTTCGTTG]

[+] EMBL BX622386             [GTTTGAATGATCGCAACTTTCTGCAGAGGGTTCGCAGCTGGGTGAAGCGTATCGTTGCGCAGGAGAACGAGCCGGACAAGTGCATGAAGCGCATGTGGGACTTAATGTTCGATGAAGCGCTGTTCAAGCATATGTGCTGGGTTGGATCTTCATCGAAAATTGCACTGCGCGATTATTACAACATCATCGATCTGTACAAGTACGGCGGCACTACCAACGTACACCGGGTAAATGACAATGAGGCGAGAAAGTTTTTATACAAAACCATGAAGTACGTGACAGACATGAGTTACCCAGAGAAATACTACGTGAAAAAGGCAGCGAATGCGAAATGTGGTAGCATTCGTAAACCAGCATCAAGAATGAGCTTAAACGTGAAGGAACAAAGCAGAGCAAAGCACCTACAGCAGGGTCAAAGCAAGCGACAGAATGAAATCGTTGAGCAGGAGGAGGATTGCTCGAATAAGAAAGATGGTTTGCAAAATGTATCCGAGCAACAATTACCAACGATTTGCGTAGGTTGCATAAAATCGGTAGAAGAATTGAATGCATTCGAAAACCGTTTAAATGACAAAACAAGGCGAACGGAAATGGAAACGTGGGTCGACAAAACAGTCGGTCACGAGCCAAATGTGGAGCGTCGCATGGAGGCATTGCTGGAACGATTAATTGATACNAACATCTTACTCAACTTTTGCTGGATGAACGTTAGCAGTANAAAGTGTTCGTTG]




>consensus_439#1
GTTTGAATGATCGCAACTTTCTGCAGAGGGTTCGCAGCTGGGTGAAGCGTATCGTTGCGC
AGGAGAACGAGCCGGACAAGTGCATGAAGCGCATGTGGGACTTAATGTTCGATGAAGCGC
TGTTCAAGCATATGTGCTGGGTTGGATCTTCATCGAAAATTGCACTGCGCGATTATTACA
ACATCATCGATCTGTACAAGTACGGCGGCACTACCAACGTACACCGGGTAAATGACAATG
AGGCGAGAAAGTTTTTATACAAAACCATGAAGTACGTGACAGACATGAGTTACCCAGAGA
AATACTACGTGAAAAAGGCAGCGAATGCGAAATGTGGTAGCATTCGTAAACCAGCATCAA
GAATGAGCTTAAACGTGAAGGAACAAAGCAGAGCAAAGCACCTACAGCAGGGTCAAAGCA
AGCGACAGAATGAAATCGTTGAGCAGGAGGAGGATTGCTCGAATAAGAAAGATGGTTTGC
AAAATGTATCCGAGCAACAATTACCAACGATTTGCGTAGGTTGCATAAAATCGGTAGAAG
AATTGAATGCATTCGAAAACCGTTTAAATGACAAAACAAGGCGAACGGAAATGGAAACGT
GGGTCGACAAAACAGTCGGTCACGAGCCAAATGTGGAGCGTCGCATGGAGGCATTGCTGG
AACGATTAATTGATACNAACATCTTACTCAACTTTTGCTGGATGAACGTTAGCAGTANAA
AGTGTTCGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_439#0      -----------------------------------------GCAAGAATCCGCACGAGGC 19
consensus_439#1      GTTTGAATGATCGCAACTTTCTGCAGAGGGTTCGCAGCTGGGTGAAGCGTATCGTTGCGC 60
                                                              *  *       *     **

consensus_439#0      AGGAGAACGAGCCGGACAAGTCGCATGAAGCGCATGTGGGATTTAATGTTCGATGAAGCG 79
consensus_439#1      AGGAGAACGAGCCGGACAAGT-GCATGAAGCGCATGTGGGACTTAATGTTCGATGAAGCG 119
                     ********************* ******************* ******************

consensus_439#0      CTGTTCAAGCATATGTGCTGGGTTGGATCTTCATCGAAAATTGCACTGCGCGATTATTAC 139
consensus_439#1      CTGTTCAAGCATATGTGCTGGGTTGGATCTTCATCGAAAATTGCACTGCGCGATTATTAC 179
                     ************************************************************

consensus_439#0      AACATCATCGATCTGTACAAGTACGGCGGCACTACCAACGTACACCGGGTAAATGACAAT 199
consensus_439#1      AACATCATCGATCTGTACAAGTACGGCGGCACTACCAACGTACACCGGGTAAATGACAAT 239
                     ************************************************************

consensus_439#0      GAGGCGAGAAAGTTTTTATACAAAACCATGAAGTACGTGACAGACATGAGTTACCCAGAG 259
consensus_439#1      GAGGCGAGAAAGTTTTTATACAAAACCATGAAGTACGTGACAGACATGAGTTACCCAGAG 299
                     ************************************************************

consensus_439#0      AAATATTACGTGAAAAAGGCAGCGAATGCGAAATGTGGTAGCATTCGTAAACCAGCATCA 319
consensus_439#1      AAATACTACGTGAAAAAGGCAGCGAATGCGAAATGTGGTAGCATTCGTAAACCAGCATCA 359
                     ***** ******************************************************

consensus_439#0      AGAATGAGCTTAAACGTAAAGGAACAAAGCAGAGCAAAGCACCTACAGCAGGGTCAAAGC 379
consensus_439#1      AGAATGAGCTTAAACGTGAAGGAACAAAGCAGAGCAAAGCACCTACAGCAGGGTCAAAGC 419
                     ***************** ******************************************

consensus_439#0      AAGCGACAGAATGAAATCGTTGAGCAGGAGGAGGATTGCTCGAATAAGAAAGATGGTTTG 439
consensus_439#1      AAGCGACAGAATGAAATCGTTGAGCAGGAGGAGGATTGCTCGAATAAGAAAGATGGTTTG 479
                     ************************************************************

consensus_439#0      CAAAATGTACCTGAGCAACAATTACCAACGATTTGCGTAGGTTGCATAAAATCGGTAGAA 499
consensus_439#1      CAAAATGTATCCGAGCAACAATTACCAACGATTTGCGTAGGTTGCATAAAATCGGTAGAA 539
                     ********* * ************************************************

consensus_439#0      GAATTGAATGCATTCGAAAACCGTTTAAATGACGAAAAAAGGCGAACGGAAATGCAAACG 559
consensus_439#1      GAATTGAATGCATTCGAAAACCGTTTAAATGACAAAACAAGGCGAACGGAAATGGAAACG 599
                     ********************************* *** **************** *****

consensus_439#0      TGGGTCGACAAAACAGTCGGTCACGAGCCAAATGTGGAGCGTCGCATGGAGGCATTGCTG 619
consensus_439#1      TGGGTCGACAAAACAGTCGGTCACGAGCCAAATGTGGAGCGTCGCATGGAGGCATTGCTG 659
                     ************************************************************

consensus_439#0      GAACGATTAATTGATACAAACATCTTACTCAACTTTTGCTGGGATGAACGTTAGCAAGTA 679
consensus_439#1      GAACGATTAATTGATACNAACATCTTACTCAACTTTTGCTGG-ATGAACGTTAGCA-GTA 717
                     ***************** ************************ ************* ***

consensus_439#0      GAAAAGGTGTACCGTTGTTAAAGTTCAAAAAACGTTGTCCCGACTGGTTTGAGTAACGGC 739
consensus_439#1      NAAAGTGTTCGTTG---------------------------------------------- 731
                      ***  **     *                                              

consensus_439#0      TAGCAGAAACCAAAAGTTACACAACACGTATCCTCTATNACCATCCATTGGGTAATTGGT 799
consensus_439#1      ------------------------------------------------------------
                                                                                 

consensus_439#0      NTCCTAAGNATTCCTTTAATCCCGGAACGTTTTAGATTAACGTTGGGCGTTAAGAATAGG 859
consensus_439#1      ------------------------------------------------------------
                                                                                 

consensus_439#0      CGTTTCGTAACACAGGTATGGGATGGAAACTGGAAAAATTTAAAGTGTTGGTACCGTACG 919
consensus_439#1      ------------------------------------------------------------
                                                                                 

consensus_439#0      TTTAAGAGACNAAAGANAGAAAACANGGCATTT 952
consensus_439#1      ---------------------------------