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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[CCGGCAGTGGAGACACCGACCAGCAGGATGGGCAAATGTGTGTGTGTGTGTGTGTCTGCGTGTGTGTATGTTTGTGTGCAGTTTTGAAGAGCGGGAGCGTTTGGAGCAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAACCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAACAAAAAGAAACGTTATCAGCAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAACTTCACATAAACAATTTCACATAACTTTAAGGGAACTCTTACTACAAAATACCACACAAACTCACACGATTCAATTCATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGAGGAGAAGAATAAAAACAACACACACACACACAAAAAAAAAACAATGTGGGAAACAGCATATTTAGCATCATTCGAAAGGAACAGCAGTGGCGGCAGACAAAAGAGAAGACAGAAAATCACACTTGTAAAATATTATAAATATATAACTATGTCGAGATTGATGCAGATGCAGGAGCAGATAAAAGCGCATTAAAACAGAGCGATGCCAGGCAAAAAAAAGGGGAAGCAAAAGAAATGAACTCACGGCAGCACATATAGGGCTAAAGATGTGGACAGCAACTCCAGTGCAG]
[+] EMBL BM587989 [CCGGCAGTGGAGACACCGACCAGCAGGATGGGCAAATGTGTGTGTGTGTGTGTGTCTGCGTGTGTGTATGTTTGTGTGCAGTTTTGAAGAGCGGGAGCGTTTGGAGCAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAACCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAACAAAAAGAAACGTTATCAGCAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAACTTCACATAAACAATTTCACATAACTTTAAGGGAACTCTTACTACAAAATACCACACAAACTCACACGATTCAATTCATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGAGGAGAAGAATAAAAACAACACACACACACACAAAAAAAAAACAATGTGGGAAACAGCATATTTAGCATCATTCGAAAGGAACAGCAGTGGCGGCAGACAAAAGAGAAGACAGAAAATCACACTTGTAAAATATTATAAATATATAACTATGTCGAGATTGATGCAGATGCAGGAGCAGATAAAAGCGCATTAAAACAGAGCGATGCCAGGCAAAAAAAAGGGGAAGCAAAAGAAATGAACTCACGGCAGCACATATAGGGCTAAAGATGTGGACAGCAACTCCAGTGCAG]
consensusID : consensus_4408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCGCGCAGGCAAAGAAAGGAAACAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAACCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAACAAAAAGAAACGTTATCAGCAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAAACTTCACATAAACAATTTCACATTACTTTAAGGGAACTCTTACTACAAAATACCACACAAACTCACACGATTCAATTCATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGAGGAGAAGAATAAAAACAACACACACACACACAAAAAAAAACAATGTGGGAAACAGCATATTTAGCATCATTCGAAAGGAACAGCAGTGGCGGCAGACAAAAGAGAAGACAGAAAATCACACTTGTAAAATATTATAAATATATAACTATGTCGAGATTGATGCAGATGCAGGAGCAGATAAAAGCGCATTAAAACAGAGCGATGCCAGGCAAAAAAAAGGGGAAGCAAAAGAAATGAACTCACGGCAGCACATATAGGCTAAAGATGTGGACAGCAACTCCAGTGCAGCAAACAGTAGGGTACATAGAGGTGGAAAAAAATGAAGC]
[+] EMBL BM639123 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCGCGCAGGCAAAGAAAGGAAACAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAACCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAACAAAAAGAAACGTTATCAGCAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAAACTTCACATAAACAATTTCACATTACTTTAAGGGAACTCTTACTACAAAATACCACACAAACTCACACGATTCAATTCATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGAGGAGAAGAATAAAAACAACACACACACACACAAAAAAAAACAATGTGGGAAACAGCATATTTAGCATCATTCGAAAGGAACAGCAGTGGCGGCAGACAAAAGAGAAGACAGAAAATCACACTTGTAAAATATTATAAATATATAACTATGTCGAGATTGATGCAGATGCAGGAGCAGATAAAAGCGCATTAAAACAGAGCGATGCCAGGCAAAAAAAAGGGGAAGCAAAAGAAATGAACTCACGGCAGCACATATAGGCTAAAGATGTGGACAGCAACTCCAGTGCAGCAAACAGTAGGGTACATAGAGGTGGAAAAAAATGAAGC]
consensusID : consensus_4408#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[CGTTTAACGGTCACATCTTCATCAAATTCTTGCCCTTGCTTTTTTCCCGCATAGAACAAACATTCGGAGCAAACTTGTGGAAAATTGCATCCTTTTTACAAAGCAATGTGTGTGTGTGTCTGCGTGTGTCTGCGTGTGTGTATGTTTGTGTGCAGTTTTGAAGAGCGGGAGCGTTTGGAGCAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAACCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAAACAAAAAGAAACGTTATCAGCAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAAACTTCACATAAACAATTTCACATTACTTTAAGGGAACCTTACTACAAAATACCACACAAACTCACACGATTCAATTCATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGGGGAGAAGAATAAAAACAACAC]
[+] EMBL BX610290 [CGTTTAACGGTCACATCTTCATCAAATTCTTGCCCTTGCTTTTTTCCCGCATAGAACAAACATTCGGAGCAAACTTGTGGAAAATTGCATCCTTTTTACAAAGCAATGTGTGTGTGTGTCTGCGTGTGTCTGCGTGTGTGTATGTTTGTGTGCAGTTTTGAAGAGCGGGAGCGTTTGGAGCAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAACCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAAACAAAAAGAAACGTTATCAGCAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAAACTTCACATAAACAATTTCACATTACTTTAAGGGAACCTTACTACAAAATACCACACAAACTCACACGATTCAATTCATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGGGGAGAAGAATAAAAACAACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4408#0 ------------------------------------------------------------
consensus_4408#1 ------------------------------------------------------------
consensus_4408#2 CGTTTAACGGTCACATCTTCATCAAATTCTTGCCCTTGCTTTTTTCCCGCATAGAACAAA 60
consensus_4408#0 --------------CCGGCAGTGGAGACACCGACCAGCAGGATGGGCAAATGTGTGTGTG 46
consensus_4408#1 ---------------------------------------------------------CCG 3
consensus_4408#2 CATTCGGAGCAAACTTGTGGAAAATTGCATCCTTTTTACAAAGCAATGTGTGTGTGTGTC 120
consensus_4408#0 TGTGTGTGTCTGCGTGTGTGTATGTTTGTGTGCAGTTTTGAAGAGCGGGAGCGTTTGGAG 106
consensus_4408#1 CCCACGCGTCCGCCCACGCGTCCGGCGGCGCGCAGGCAAAGAAAG-----------GAAA 52
consensus_4408#2 TGCGTGTGTCTGCGTGTGTGTATGTTTGTGTGCAGTTTTGAAGAGCGGGAGCGTTTGGAG 180
* *** ** * ** * * * **** * ** * *
consensus_4408#0 CAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAA 166
consensus_4408#1 CAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAA 112
consensus_4408#2 CAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAA 240
************************************************************
consensus_4408#0 CCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAA-CAAAAAGAAACGTTATCAG 225
consensus_4408#1 CCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAA-CAAAAAGAAACGTTATCAG 171
consensus_4408#2 CCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAAACAAAAAGAAACGTTATCAG 300
**************************************** *******************
consensus_4408#0 CAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAA-CTTCACATAAACAATT 284
consensus_4408#1 CAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAAACTTCACATAAACAATT 231
consensus_4408#2 CAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAAACTTCACATAAACAATT 360
******************************************* ****************
consensus_4408#0 TCACATAACTTTAAGGGAACTCTTACTACAAAATACCACACAAACTCACACGATTCAATT 344
consensus_4408#1 TCACATTACTTTAAGGGAACTCTTACTACAAAATACCACACAAACTCACACGATTCAATT 291
consensus_4408#2 TCACATTACTTTAAGGGAAC-CTTACTACAAAATACCACACAAACTCACACGATTCAATT 419
****** ************* ***************************************
consensus_4408#0 CATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGAGGAGA 404
consensus_4408#1 CATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGAGGAGA 351
consensus_4408#2 CATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGGGGAGA 479
****************************************************** *****
consensus_4408#0 AGAATAAAAACAACACACACACACACAAAAAAAAAACAATGTGGGAAACAGCATATTTAG 464
consensus_4408#1 AGAATAAAAACAACACACACACACACAAAAAAAAA-CAATGTGGGAAACAGCATATTTAG 410
consensus_4408#2 AGAATAAAAACAACAC-------------------------------------------- 495
****************
consensus_4408#0 CATCATTCGAAAGGAACAGCAGTGGCGGCAGACAAAAGAGAAGACAGAAAATCACACTTG 524
consensus_4408#1 CATCATTCGAAAGGAACAGCAGTGGCGGCAGACAAAAGAGAAGACAGAAAATCACACTTG 470
consensus_4408#2 ------------------------------------------------------------
consensus_4408#0 TAAAATATTATAAATATATAACTATGTCGAGATTGATGCAGATGCAGGAGCAGATAAAAG 584
consensus_4408#1 TAAAATATTATAAATATATAACTATGTCGAGATTGATGCAGATGCAGGAGCAGATAAAAG 530
consensus_4408#2 ------------------------------------------------------------
consensus_4408#0 CGCATTAAAACAGAGCGATGCCAGGCAAAAAAAAGGGGAAGCAAAAGAAATGAACTCACG 644
consensus_4408#1 CGCATTAAAACAGAGCGATGCCAGGCAAAAAAAAGGGGAAGCAAAAGAAATGAACTCACG 590
consensus_4408#2 ------------------------------------------------------------
consensus_4408#0 GCAGCACATATAGGGCTAAAGATGTGGACAGCAACTCCAGTGCAG--------------- 689
consensus_4408#1 GCAGCACATATAGG-CTAAAGATGTGGACAGCAACTCCAGTGCAGCAAACAGTAGGGTAC 649
consensus_4408#2 ------------------------------------------------------------
consensus_4408#0 -----------------------
consensus_4408#1 ATAGAGGTGGAAAAAAATGAAGC 672
consensus_4408#2 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||