These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [CCGGCAGTGGAGACACCGACCAGCAGGATGGGCAAATGTGTGTGTGTGTGTGTGTCTGCGTGTGTGTATGTTTGTGTGCAGTTTTGAAGAGCGGGAGCGTTTGGAGCAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAACCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAACAAAAAGAAACGTTATCAGCAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAACTTCACATAAACAATTTCACATAACTTTAAGGGAACTCTTACTACAAAATACCACACAAACTCACACGATTCAATTCATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGAGGAGAAGAATAAAAACAACACACACACACACAAAAAAAAAACAATGTGGGAAACAGCATATTTAGCATCATTCGAAAGGAACAGCAGTGGCGGCAGACAAAAGAGAAGACAGAAAATCACACTTGTAAAATATTATAAATATATAACTATGTCGAGATTGATGCAGATGCAGGAGCAGATAAAAGCGCATTAAAACAGAGCGATGCCAGGCAAAAAAAAGGGGAAGCAAAAGAAATGAACTCACGGCAGCACATATAGGGCTAAAGATGTGGACAGCAACTCCAGTGCAG] [+] EMBL BM587989 [CCGGCAGTGGAGACACCGACCAGCAGGATGGGCAAATGTGTGTGTGTGTGTGTGTCTGCGTGTGTGTATGTTTGTGTGCAGTTTTGAAGAGCGGGAGCGTTTGGAGCAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAACCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAACAAAAAGAAACGTTATCAGCAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAACTTCACATAAACAATTTCACATAACTTTAAGGGAACTCTTACTACAAAATACCACACAAACTCACACGATTCAATTCATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGAGGAGAAGAATAAAAACAACACACACACACACAAAAAAAAAACAATGTGGGAAACAGCATATTTAGCATCATTCGAAAGGAACAGCAGTGGCGGCAGACAAAAGAGAAGACAGAAAATCACACTTGTAAAATATTATAAATATATAACTATGTCGAGATTGATGCAGATGCAGGAGCAGATAAAAGCGCATTAAAACAGAGCGATGCCAGGCAAAAAAAAGGGGAAGCAAAAGAAATGAACTCACGGCAGCACATATAGGGCTAAAGATGTGGACAGCAACTCCAGTGCAG] consensusID : consensus_4408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCGCGCAGGCAAAGAAAGGAAACAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAACCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAACAAAAAGAAACGTTATCAGCAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAAACTTCACATAAACAATTTCACATTACTTTAAGGGAACTCTTACTACAAAATACCACACAAACTCACACGATTCAATTCATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGAGGAGAAGAATAAAAACAACACACACACACACAAAAAAAAACAATGTGGGAAACAGCATATTTAGCATCATTCGAAAGGAACAGCAGTGGCGGCAGACAAAAGAGAAGACAGAAAATCACACTTGTAAAATATTATAAATATATAACTATGTCGAGATTGATGCAGATGCAGGAGCAGATAAAAGCGCATTAAAACAGAGCGATGCCAGGCAAAAAAAAGGGGAAGCAAAAGAAATGAACTCACGGCAGCACATATAGGCTAAAGATGTGGACAGCAACTCCAGTGCAGCAAACAGTAGGGTACATAGAGGTGGAAAAAAATGAAGC] [+] EMBL BM639123 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCGCGCAGGCAAAGAAAGGAAACAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAACCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAACAAAAAGAAACGTTATCAGCAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAAACTTCACATAAACAATTTCACATTACTTTAAGGGAACTCTTACTACAAAATACCACACAAACTCACACGATTCAATTCATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGAGGAGAAGAATAAAAACAACACACACACACACAAAAAAAAACAATGTGGGAAACAGCATATTTAGCATCATTCGAAAGGAACAGCAGTGGCGGCAGACAAAAGAGAAGACAGAAAATCACACTTGTAAAATATTATAAATATATAACTATGTCGAGATTGATGCAGATGCAGGAGCAGATAAAAGCGCATTAAAACAGAGCGATGCCAGGCAAAAAAAAGGGGAAGCAAAAGAAATGAACTCACGGCAGCACATATAGGCTAAAGATGTGGACAGCAACTCCAGTGCAGCAAACAGTAGGGTACATAGAGGTGGAAAAAAATGAAGC] consensusID : consensus_4408#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [CGTTTAACGGTCACATCTTCATCAAATTCTTGCCCTTGCTTTTTTCCCGCATAGAACAAACATTCGGAGCAAACTTGTGGAAAATTGCATCCTTTTTACAAAGCAATGTGTGTGTGTGTCTGCGTGTGTCTGCGTGTGTGTATGTTTGTGTGCAGTTTTGAAGAGCGGGAGCGTTTGGAGCAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAACCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAAACAAAAAGAAACGTTATCAGCAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAAACTTCACATAAACAATTTCACATTACTTTAAGGGAACCTTACTACAAAATACCACACAAACTCACACGATTCAATTCATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGGGGAGAAGAATAAAAACAACAC] [+] EMBL BX610290 [CGTTTAACGGTCACATCTTCATCAAATTCTTGCCCTTGCTTTTTTCCCGCATAGAACAAACATTCGGAGCAAACTTGTGGAAAATTGCATCCTTTTTACAAAGCAATGTGTGTGTGTGTCTGCGTGTGTCTGCGTGTGTGTATGTTTGTGTGCAGTTTTGAAGAGCGGGAGCGTTTGGAGCAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAACCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAAACAAAAAGAAACGTTATCAGCAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAAACTTCACATAAACAATTTCACATTACTTTAAGGGAACCTTACTACAAAATACCACACAAACTCACACGATTCAATTCATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGGGGAGAAGAATAAAAACAACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4408#0 ------------------------------------------------------------ consensus_4408#1 ------------------------------------------------------------ consensus_4408#2 CGTTTAACGGTCACATCTTCATCAAATTCTTGCCCTTGCTTTTTTCCCGCATAGAACAAA 60 consensus_4408#0 --------------CCGGCAGTGGAGACACCGACCAGCAGGATGGGCAAATGTGTGTGTG 46 consensus_4408#1 ---------------------------------------------------------CCG 3 consensus_4408#2 CATTCGGAGCAAACTTGTGGAAAATTGCATCCTTTTTACAAAGCAATGTGTGTGTGTGTC 120 consensus_4408#0 TGTGTGTGTCTGCGTGTGTGTATGTTTGTGTGCAGTTTTGAAGAGCGGGAGCGTTTGGAG 106 consensus_4408#1 CCCACGCGTCCGCCCACGCGTCCGGCGGCGCGCAGGCAAAGAAAG-----------GAAA 52 consensus_4408#2 TGCGTGTGTCTGCGTGTGTGTATGTTTGTGTGCAGTTTTGAAGAGCGGGAGCGTTTGGAG 180 * *** ** * ** * * * **** * ** * * consensus_4408#0 CAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAA 166 consensus_4408#1 CAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAA 112 consensus_4408#2 CAATTTTACACTCTTACCGCAAACAAGGTAATAGTTTGCACTCTGTCATTACTCACTCAA 240 ************************************************************ consensus_4408#0 CCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAA-CAAAAAGAAACGTTATCAG 225 consensus_4408#1 CCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAA-CAAAAAGAAACGTTATCAG 171 consensus_4408#2 CCATCACAAGCATGATAATAAAACCAAACCAAAAAAAAAAACAAAAAGAAACGTTATCAG 300 **************************************** ******************* consensus_4408#0 CAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAA-CTTCACATAAACAATT 284 consensus_4408#1 CAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAAACTTCACATAAACAATT 231 consensus_4408#2 CAAATATTCACCCTCCCCTCCCAAACAAACAAACAAAAAAAAAACTTCACATAAACAATT 360 ******************************************* **************** consensus_4408#0 TCACATAACTTTAAGGGAACTCTTACTACAAAATACCACACAAACTCACACGATTCAATT 344 consensus_4408#1 TCACATTACTTTAAGGGAACTCTTACTACAAAATACCACACAAACTCACACGATTCAATT 291 consensus_4408#2 TCACATTACTTTAAGGGAAC-CTTACTACAAAATACCACACAAACTCACACGATTCAATT 419 ****** ************* *************************************** consensus_4408#0 CATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGAGGAGA 404 consensus_4408#1 CATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGAGGAGA 351 consensus_4408#2 CATCAAAAACTCAAAAGCAAATTAATGAACGAATAACGAAAACAAAACGACGAGGGGAGA 479 ****************************************************** ***** consensus_4408#0 AGAATAAAAACAACACACACACACACAAAAAAAAAACAATGTGGGAAACAGCATATTTAG 464 consensus_4408#1 AGAATAAAAACAACACACACACACACAAAAAAAAA-CAATGTGGGAAACAGCATATTTAG 410 consensus_4408#2 AGAATAAAAACAACAC-------------------------------------------- 495 **************** consensus_4408#0 CATCATTCGAAAGGAACAGCAGTGGCGGCAGACAAAAGAGAAGACAGAAAATCACACTTG 524 consensus_4408#1 CATCATTCGAAAGGAACAGCAGTGGCGGCAGACAAAAGAGAAGACAGAAAATCACACTTG 470 consensus_4408#2 ------------------------------------------------------------ consensus_4408#0 TAAAATATTATAAATATATAACTATGTCGAGATTGATGCAGATGCAGGAGCAGATAAAAG 584 consensus_4408#1 TAAAATATTATAAATATATAACTATGTCGAGATTGATGCAGATGCAGGAGCAGATAAAAG 530 consensus_4408#2 ------------------------------------------------------------ consensus_4408#0 CGCATTAAAACAGAGCGATGCCAGGCAAAAAAAAGGGGAAGCAAAAGAAATGAACTCACG 644 consensus_4408#1 CGCATTAAAACAGAGCGATGCCAGGCAAAAAAAAGGGGAAGCAAAAGAAATGAACTCACG 590 consensus_4408#2 ------------------------------------------------------------ consensus_4408#0 GCAGCACATATAGGGCTAAAGATGTGGACAGCAACTCCAGTGCAG--------------- 689 consensus_4408#1 GCAGCACATATAGG-CTAAAGATGTGGACAGCAACTCCAGTGCAGCAAACAGTAGGGTAC 649 consensus_4408#2 ------------------------------------------------------------ consensus_4408#0 ----------------------- consensus_4408#1 ATAGAGGTGGAAAAAAATGAAGC 672 consensus_4408#2 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||