|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1145 fasta sequence
[TCAGGTGTGCACAGCGTCCGTTTAGTAGGGGGTTTTCCGCAAACGCCCGTGACTGTTTATCGCCCAGAAGTTCGAGCTTCGACTAGAATCCACGTGTGTGTGAAGTGAGCTGTGGCTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAAAGAAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACCGACTTGGCCACTTTCGGGTGTGTGTGTGTGTGCGAGTGTTTGTGTGTGAGTGTGTGTGTGTACCGCGGCTTCGTGCTGAAGTGTTGAAGATGTCCTCCATATTCGCTCAGGGGAGTGGTTGAGCGTGCCACGGCCGAACTATCGAAACGCATCAACGGCCTTGGCTGCCGGTCGAAGCACCATGCATGGCAGTGGCGGTGGTGGTGGCGGTGGCGGTGGCAAATCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAAGCTCCAGCAACGCCGGCCAATCTCACCATNNNTTCTACGTTAATTAGACAGGGGAGCGAGGACGGTGGTGGAACATTCAGTTAGTTTCTTTCTTTTTATGTGAGCTTCTTTGCTCTTCTTTTTAACGCAATTTATAAGGCACAGCTGCCAGCTAATGCGTAGTTTACAACACTATTTTTTACTTACCTTTTTTACACGCATACTTTCGTGGCTTGTAACGGAACAGTCACTTTGGCCATCGACTCCACAATGCAGGAGAGAGGAAACTATTGTATGGCAACCACGATACTTACTGATTGGTTTTTAAGTGTACAGCCCTGATCTCACTTGTTAAATGCCCCCTCGAGCAAGGAAACTCAAAATTAATGTTAACTTAAAACAGGACAGCAAAAAAATGGGTAGATATGAAAAGGGCAACAAAGGGAAAGAGTAAGCCTGCAATTGCTAAAACAAAACAAAACAAAAAAGAAAACAAAAATAATCTAATTTTGTCGAATGTTAAATGGCTGTGTAGATAAGAGAGTGTATAAAACCCTAATGCAGAAAGAGAAGAAAGAGAAATTGATTGAAAAAAAAAAAACAAG]
[+] EMBL AF002237 [TCAGGTGTGCACAGCGTCCGTTTAGTAGGGGGTTTTCCGCAAACGCCCGTGACTGTTTATCGCCCAGAAGTTCGAGCTTCGACTAGAATCCACGTGTGTGTGAAGTGAGCTGTGGCTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAAAGAAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACCGACTTGGCCACTTTCGGGTGTGTGTGTGTGTGCGAGTGTTTGTGTGTGAGTGTGTGTGTGTACCGCGGCTTCGTGCTGAAGTGTTGAAGATGTCCTCCATATTCGCTCAGGGGAGTGGTTGAGCGTGCCACGGCCGAACTATCGAAACGCATCAACGGCCTTGGCTGCCGGTCGAAGCACCATGCATGGCAGTGGCGGTGGTGGTGGCGGTGGCGGTGGCAAATCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAAGCTCCAGCAACGCCGGCCAATCTCACCATNNNTTCTACGTTAATTAGACAGGGGAGCGAGGACGGTGGTGGAACATTCAGTTAGTTTCTTTCTTTTTATGTGAGCTTCTTTGCTCTTCTTTTTAACGCAATTTATAAGGCACAGCTGCCAGCTAATGCGTAGTTTACAACACTATTTTTTACTTACCTTTTTTACACGCATACTTTCGTGGCTTGTAACGGAACAGTCACTTTGGCCATCGACTCCACAATGCAGGAGAGAGGAAACTATTGTATGGCAACCACGATACTTACTGATTGGTTTTTAAGTGTACAGCCCTGATCTCACTTGTTAAATGCCCCCTCGAGCAAGGAAACTCAAAATTAATGTTAACTTAAAACAGGACAGCAAAAAAATGGGTAGATATGAAAAGGGCAACAAAGGGAAAGAGTAAGCCTGCAATTGCTAAAACAAAACAAAACAAAAAAGAAAACAAAAATAATCTAATTTTGTCGAATGTTAAATGGCTGTGTAGATAAGAGAGTGTATAAAACCCTAATGCAGAAAGAGAAGAAAGAGAAATTGATTGAAAAAAAAAAAACAAG]
consensusID : consensus_4423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 753 fasta sequence
[CCGCGCAAACGCCCGTGACTGTTTATCGTTCGAGCTTCGACTAGAATCCACGGGTGATTGAAGTGAGCTGTGCGTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAAAAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCACTTTCGGGAGTGTGTGTGCGTGTGTTTGTGTGTGAGTGTGTGTACCGCGGCTTCGTGCTGAATGTTGAAGATGTCCTCCATATCCGCCCAGGGAGTGGTTGAGCGTGCCTCGGCCGAACTATCGAAACGCATCAACGGCCTTGGGCTGCGGTCGAAGCACCATCATGGCAGTGGCGGTGGTGGCGGCGGCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAACTCCAGCAACGCCGCCAATCTCTCCATCCAAACCGCCGGCCAGTCACAGTCGGGCGGTGGTGGAGGCATCACTGGCGGAAGGTTGGTTGGTGGTGGCCACGCTCCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGGAAGGTAACAGTGCGGGCGGCAAGGGCTCGATGCTTGGCATGGGCGCGGGACCTGGTGGCAAATCGCAGTCCAACACACCGCAGTCGCTGCGCAAGATTGGCCA]
[+] EMBL BM656204 [CCGCGCAAACGCCCGTGACTGTTTATCGTTCGAGCTTCGACTAGAATCCACGGGTGATTGAAGTGAGCTGTGCGTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAAAAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCACTTTCGGGAGTGTGTGTGCGTGTGTTTGTGTGTGAGTGTGTGTACCGCGGCTTCGTGCTGAATGTTGAAGATGTCCTCCATATCCGCCCAGGGAGTGGTTGAGCGTGCCTCGGCCGAACTATCGAAACGCATCAACGGCCTTGGGCTGCGGTCGAAGCACCATCATGGCAGTGGCGGTGGTGGCGGCGGCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAACTCCAGCAACGCCGCCAATCTCTCCATCCAAACCGCCGGCCAGTCACAGTCGGGCGGTGGTGGAGGCATCACTGGCGGAAGGTTGGTTGGTGGTGGCCACGCTCCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGGAAGGTAACAGTGCGGGCGGCAAGGGCTCGATGCTTGGCATGGGCG ]
[+] EMBL BM634053 [ ccgGCATTGGTTTGGGTGAAACGTGAAAAAAAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCACTTTCGGGAGTGTGTGTGCGTGTGTTTGTGTGTGAGTGTGTGTACCGCGGCTTCGTGCTGAATGTTGAAGATGTCCTCCATATCCGCCCAGGGAGTGGTTGAGCGTGCCTCGGCCGAACTATCGAAACGCATCAACGGCCTTGGGCTGCGGTCGAAGCACCATCATGGCAGTGGCGGTGGTGGCGGCGGCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAACTCCAGCAACGCCGCCAATCTCTCCATCCAAACCGCCGGCCAGTCACAGTCGGGCGGTGGTGGAGGCATCACTGGCGG AGG TGG TGGTGGTGGCCACGCTCCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGG AGGTAACAGTGCGGGCGGCAAGGGCTCGATGCTTGGCATGGGCGCGGGACCTGGTGGCAAATCGCAGTCCAACACACCGCAGTCGCTGCGCAAGATTGGCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4423#0 TCAGGTGTGCACAGCGTCCGTTTAGTAGGGGGTTTTCCGCAAACGCCCGTGACTGTTTAT 60
consensus_4423#1 ----------------------------------CCGCGCAAACGCCCGTGACTGTTTAT 26
***********************
consensus_4423#0 CGCCCAGAAGTTCGAGCTTCGACTAGAATCCACGTGTGTGTGAAGTGAGCTGTGGCTGTG 120
consensus_4423#1 CG--------TTCGAGCTTCGACTAGAATCCACGGGTGATTGAAGTGAGCTGTGCGTGTG 78
** ************************ *** ************** ****
consensus_4423#0 TGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAA 180
consensus_4423#1 TGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAA 138
************************************************************
consensus_4423#0 AGAAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGT 240
consensus_4423#1 AAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGT 198
* *********************************************************
consensus_4423#0 TTGTGTGTGCCTACGCAAAAGTGGCCCACCG-ACTTGGCCACTTTCGGGTGTGTGTGTGT 299
consensus_4423#1 TTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCACTTTCGGGAGTGTGTGTGC 258
***************************** * ***************** *********
consensus_4423#0 GTGCGAGTGTTTGTGTGTGAGTGTGTGTGTGTACCGCGGCTTCGTGCTGAAGTGTTGAAG 359
consensus_4423#1 GTG----TGTTTGTGTGTGAGTGTGTG----TACCGCGGCTTCGTGCTGAA-TGTTGAAG 309
*** ******************** ******************** ********
consensus_4423#0 ATGTCCTCCATATTCGCTCAGGGGAGTGGTTGAGCGTGCCACGGCCGAACTATCGAAACG 419
consensus_4423#1 ATGTCCTCCATATCCGCCCAGGG-AGTGGTTGAGCGTGCCTCGGCCGAACTATCGAAACG 368
************* *** ***** **************** *******************
consensus_4423#0 CATCAACGGCCTTGGCTGCCGGTCGAAGCACCATGCATGGCAGTGGCGGTGGTGGTGGCG 479
consensus_4423#1 CATCAACGGCCTTGGGCTGCGGTCGAAGCACCAT-CATGGCAGTGGCGGTGGTGGCGGCG 427
*************** *************** ******************** ****
consensus_4423#0 GTGGCGGTGGCAAATCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGT 539
consensus_4423#1 GCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGT 487
* *********** **********************************************
consensus_4423#0 GCGGTGGCAGCAGCTCCAGCAAGCTCCAGCAACGCCGGCCAATCTCACCATNNNTTCTAC 599
consensus_4423#1 GCGGTGGCAGCAGCTCCAGCAA-CTCCAGCAACGCCG-CCAATCTCTCCATCCAAAC--C 543
********************** ************** ******** **** * *
consensus_4423#0 GTTAATTAGACAGGGGAGCGAGGACGGTGGTGGAACATTCAGTTAGTTTCTTTCTTTTTA 659
consensus_4423#1 GCCGGCCAGTCACAGTC----GGGCGGTGGTGGAGGCATCACTGGCGGAAGGTTGGTTGG 599
* ** ** * ** ********** *** * * **
consensus_4423#0 TGTGAGCTTCTTTGCTCTTCTTTTTAACGCAATTTATAAGGCACAGCTGCCAGCTAATGC 719
consensus_4423#1 TGGTGGCCACGCT--CCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGGAAGGTA- 656
** ** * * * * * * * **** * * * *
consensus_4423#0 GTAGTTTACAACACTATTTTTTACTTACCTTTTTTACACGCATACTTTCGTGGCTTGTAA 779
consensus_4423#1 ACAGTGCG-GGCGGCAAGGGCTCGATGCTTGGCATGGGCGCGGGACCTGGTGGCAAATCG 715
*** * * * * * * * *** * ***** *
consensus_4423#0 CGGAACAGTCACTTTGGCCATCGACTCCACAATGCAGGAGAGAGGAAACTATTGTATGGC 839
consensus_4423#1 CAGTCCAA-CACACCG--CAGTCGCTGCGCAAGATTGGCCA------------------- 753
* * ** *** * ** ** * *** ** *
consensus_4423#0 AACCACGATACTTACTGATTGGTTTTTAAGTGTACAGCCCTGATCTCACTTGTTAAATGC 899
consensus_4423#1 ------------------------------------------------------------
consensus_4423#0 CCCCTCGAGCAAGGAAACTCAAAATTAATGTTAACTTAAAACAGGACAGCAAAAAAATGG 959
consensus_4423#1 ------------------------------------------------------------
consensus_4423#0 GTAGATATGAAAAGGGCAACAAAGGGAAAGAGTAAGCCTGCAATTGCTAAAACAAAACAA 1019
consensus_4423#1 ------------------------------------------------------------
consensus_4423#0 AACAAAAAAGAAAACAAAAATAATCTAATTTTGTCGAATGTTAAATGGCTGTGTAGATAA 1079
consensus_4423#1 ------------------------------------------------------------
consensus_4423#0 GAGAGTGTATAAAACCCTAATGCAGAAAGAGAAGAAAGAGAAATTGATTGAAAAAAAAAA 1139
consensus_4423#1 ------------------------------------------------------------
consensus_4423#0 AACAAG 1145
consensus_4423#1 ------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||