cluster # 4441

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Anopheles gambiae
cluster # 4441 cluster # 4441 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4441#0 length = 712 sequences # 2

consensus_4441#1 length = 622 sequences # 1

consensusID : consensus_4441#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 712
fasta sequence

                              [CCGCCCACGCGTCCGTGACTTTGCTCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTGTATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGGTGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATAGTGTAGAGTGTGTGCATCGCACAGTAACTTGATCGTAACTCACGTACGTGTTCAGCTGTGTTAGCGGAGTGAATCATGTGATCTATCTACCAAGTTGTGCGCGATCGGTATACACGTGTAAAGTGAAGTATTTAATAGTTTGTGTGTGTTAAAGAATAGAGCAAATAGAGGCGAATATTGAATCAAAACAGGTCGTAAAAGTGTGTCGCTAAGCAAGTGGAGCATGTTGGGGATAAGCAAGAAGCCGGGTCCTCCGGTGCCGCCGCGCCCGAGTGCGGCGGCCGTTGCAACGGCCCTTGCAAAACAGCGCGAAAACTCGCCCTCTCCAAATGGGGCCCCAAGACCATGCAATCCGACCGGGATGATGACCGGGATGGCCACCTTAAAGCCGCCCCATCCGGGCCGTACTGTAGTGTACAAGTCGCCCGACTTTGATCCTCCCCCCGCAGGCAAGAAATCGAACGCACCAGCTGCAGGAATCGTTGCAATGATCGCCCAACCTAAGCACGAAAACGGAACGCGATCTATCACGAAA]

[+] EMBL BM610148             [CCGCCCACGCGTCCGTGACTTTGCTCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTGTATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGGTGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATAGTGTAGAGTGTGTGCATCGCACAGTAACTTGATCGTAACTCACGTACGTGTTCAGCTGTGTTAGCGGAGTGAATCATGTGATCTATCTACCAAGTTGTGCGCGATCGGTATACACGTGTAAAGTGAAGTATTTAATAGTTTGTGTGTGTTAAAGAATAGAGCAAATAGAGGCGAATATTGAATCAAAACAGGTCGTAAAAGTGTGTCGCTAAGCAAGTGGAGCATGTTGGGGATAAGCAAGAAGCCGGGTCCTCCGGTGCCGCCGCGCCCGAGTGCGGCGGCCGTTGCAACGGCCCTTGCAAAACAGCGCGAAAACTCGCCCTCTCCAAATGGGGCCCCAAGACCATGCAATCCGACCGGGATGATGACCGGGATGGCCACCTTAAAGCCGCCCCATCCGGGCCGTACTGTAGTGTACAAGTCGCCCGACTTTGATCCTCCCCCCGCAGGCAAGAAATCGAACGCACCAGCTGCAGGAATCGTTGCAATGATCGCCCAACCTAAGCACGAAAACGGAACGCGATCTATCACGAAA]
[+] EMBL BM650614             [                              cCGGTACGGTTGGTCGTGTCTCGTGTGTTGTATTTTTTTACGCAGCAGGTATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGGTGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATAGTGTAGAGTGTGTGCATCGCACAGTAACTTGATCGTAACTCACGTACGTGTTCAGCTGTGTTAGCGGAGTGAATCATGTGATCTATCTACCAAGTTGTGCGCGATCGGTATACACGTGTAAAGTGAAGTATTTAATAGTTTGTGTGTGTTAAAGAATAGAGCAAATAGAGGCGAATATTGAATCAAAACAGGTCGTAAAAGTGTGTCGCTAAGCAAGTGGAGCATGTTGGGGATAAGCAAGAAGCCGGGTCCTCCGGTGCCGCCGCGCCCGAGTGCGGCGGCCGTTGCAACGGCCCTTGCAAAACAGCGCGAAAACTCGCCCTCTCCAAATGGGGCCCCAAGACCATGCAATCCGACCGGGATGATGACCGGGATGGCCACCTTAAAGCCGCCCCATCCGGGTCGTACTG                                                                                                                             ]




>consensus_4441#0
CCGCCCACGCGTCCGTGACTTTGCTCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTG
TATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGG
TGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATAGTG
TAGAGTGTGTGCATCGCACAGTAACTTGATCGTAACTCACGTACGTGTTCAGCTGTGTTA
GCGGAGTGAATCATGTGATCTATCTACCAAGTTGTGCGCGATCGGTATACACGTGTAAAG
TGAAGTATTTAATAGTTTGTGTGTGTTAAAGAATAGAGCAAATAGAGGCGAATATTGAAT
CAAAACAGGTCGTAAAAGTGTGTCGCTAAGCAAGTGGAGCATGTTGGGGATAAGCAAGAA
GCCGGGTCCTCCGGTGCCGCCGCGCCCGAGTGCGGCGGCCGTTGCAACGGCCCTTGCAAA
ACAGCGCGAAAACTCGCCCTCTCCAAATGGGGCCCCAAGACCATGCAATCCGACCGGGAT
GATGACCGGGATGGCCACCTTAAAGCCGCCCCATCCGGGCCGTACTGTAGTGTACAAGTC
GCCCGACTTTGATCCTCCCCCCGCAGGCAAGAAATCGAACGCACCAGCTGCAGGAATCGT
TGCAATGATCGCCCAACCTAAGCACGAAAACGGAACGCGATCTATCACGAAA

consensusID : consensus_4441#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [CCGCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTGTATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGGTGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATGTGTGTATATTGTTTCGTTCGGGTGTTTATCTGTGTGTTGTTGTTGTTTTTGTTCGCAATCTTTCTGTAAAGTGTTAGTTTTTAAGAAATATGTATCCAAAAAACAACGAACCCGGTACGACAAAATAATAATAGTTGTTTTATGGAGGGTGGTGGGGAGGATGTAGTGCAGTGTAAATGGTGGGGGGGTGCCACAAACGATAGGGGAAGTTTGAAACCCACCCACCCCCCTCTTCCCCATTTTACCGGTCTTTAAGTTCGCACACGTATTTCAAAACCGCACCGCATACAATCACCGCGCGCCGCGTTGCCTTGGCGATAGAGGAGCCTGCCCTTTTCGGGGGACGCAGAGCGTTTGTGTGCCATTTTGTGTGCTAAGAACCCCCCACAACCGCGGACGCTTAATCGCGCTCGCGTGTGTTCTAGTAGACGATTTTTCGGAAAAATGCCTGCCCAAAAACACAAAAC]

[+] EMBL BM594646             [CCGCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTGTATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGGTGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATGTGTGTATATTGTTTCGTTCGGGTGTTTATCTGTGTGTTGTTGTTGTTTTTGTTCGCAATCTTTCTGTAAAGTGTTAGTTTTTAAGAAATATGTATCCAAAAAACAACGAACCCGGTACGACAAAATAATAATAGTTGTTTTATGGAGGGTGGTGGGGAGGATGTAGTGCAGTGTAAATGGTGGGGGGGTGCCACAAACGATAGGGGAAGTTTGAAACCCACCCACCCCCCTCTTCCCCATTTTACCGGTCTTTAAGTTCGCACACGTATTTCAAAACCGCACCGCATACAATCACCGCGCGCCGCGTTGCCTTGGCGATAGAGGAGCCTGCCCTTTTCGGGGGACGCAGAGCGTTTGTGTGCCATTTTGTGTGCTAAGAACCCCCCACAACCGCGGACGCTTAATCGCGCTCGCGTGTGTTCTAGTAGACGATTTTTCGGAAAAATGCCTGCCCAAAAACACAAAAC]




>consensus_4441#1
CCGCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTGTATTTTTTTACGCAGCAGGCAT
CGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGGTGGAAACAAACCAGCAAAACGG
AGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATGTGTGTATATTGTTTCGTTCGGGTGT
TTATCTGTGTGTTGTTGTTGTTTTTGTTCGCAATCTTTCTGTAAAGTGTTAGTTTTTAAG
AAATATGTATCCAAAAAACAACGAACCCGGTACGACAAAATAATAATAGTTGTTTTATGG
AGGGTGGTGGGGAGGATGTAGTGCAGTGTAAATGGTGGGGGGGTGCCACAAACGATAGGG
GAAGTTTGAAACCCACCCACCCCCCTCTTCCCCATTTTACCGGTCTTTAAGTTCGCACAC
GTATTTCAAAACCGCACCGCATACAATCACCGCGCGCCGCGTTGCCTTGGCGATAGAGGA
GCCTGCCCTTTTCGGGGGACGCAGAGCGTTTGTGTGCCATTTTGTGTGCTAAGAACCCCC
CACAACCGCGGACGCTTAATCGCGCTCGCGTGTGTTCTAGTAGACGATTTTTCGGAAAAA
TGCCTGCCCAAAAACACAAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4441#0      CCGCCCACGCGTCCGTGACTTTGCTCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTG 60
consensus_4441#1      ----------------------CCGCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTG 38
                                             * ***********************************

consensus_4441#0      TATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGG 120
consensus_4441#1      TATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGG 98
                      ************************************************************

consensus_4441#0      TGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATA-GT 179
consensus_4441#1      TGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATGTGT 158
                      ********************************************************  **

consensus_4441#0      GTAGAGTGTGTGCATCGCACAGTAACTTGATCGTAACTCACGTACGTGTTCAGCTGTGTT 239
consensus_4441#1      GTATATTGTTTCGTTCGGGTGTTTATCTGTGTGTTGTTGTTGTTTTTGTTC-GCAATCTT 217
                      *** * *** *   ***     * *  **   **   *   **   ***** **  * **

consensus_4441#0      AGCGGAGTGAATCATGTGATCTATCTACCAAGTTGTGCGCGATCGGTATACACGTGTAAA 299
consensus_4441#1      TCTGTAAAGTGTTAGTT--TTTAAGAAATATGTATCCAAAAAACAACGAACCCG-GTACG 274
                         * *  *  * *  *  * **   *  * **        * *     ** ** ***  

consensus_4441#0      GTGAAGTATTTAATAGTTTGTGTGTGTTAAAGAATAGAGCAAATAGAGGCGAATATTGAA 359
consensus_4441#1      ACAAAATAAT-AATAGTT-----GTTTTA-----TGGAGGGTGGTGGGGAGGATGTAGTG 323
                         ** ** * *******     ** ***     * ***      * ** * ** * *  

consensus_4441#0      TCAAAACAGGTCGTAAAAGTGTGTCGCTAAGCAAGTGGAGCATGTTGGGGATAAGCAAGA 419
consensus_4441#1      -CAGTGTAAATGGTGGGGGGGTGCCAC-AAACGA-TAGGGGAAGTTTGAAACCCACCCAC 380
                       **    *  * **    * *** * * ** * * * * * * *** *  *    *    

consensus_4441#0      AGCCGGGTCCTCCGGTGCCGCCGCGCCCGAGTGCG-GCGGCCGTTGCAACGGCCCTTGCA 478
consensus_4441#1      CCCCCTCTTCCCCATTTTACCGGTCTTTAAGTTCGCACACGTATTTCAAAA--CCGCACC 438
                        **   * * **  *    * *      *** **  *     ** ***    **   * 

consensus_4441#0      AAACAGCGCGAAAACTCGCCCTCTCCAAATGGGGCCCCAAGACCATGCAATCCGACCGGG 538
consensus_4441#1      GCATACAATCACCGCGCGCCGCGTTGCCTTGGCGATAGAGGAGCCTGCCCTTTTCGGGGG 498
                        * *     *   * ****   *     *** *    * ** * ***  *      ***

consensus_4441#0      ATGATGACCGGGATGGCCACCTTAAAGCCGCCCCATCCGGGCCGTACTGTAGTGTACAAG 598
consensus_4441#1      ACGCAGAGCG---------TTTGTGTGCCATTTTGTGTGCTAAGAACCCCC---CACAA- 545
                      * *  ** **           *    ***      *  *    * **        **** 

consensus_4441#0      TCGCCCGACTTTGATCCTCCCCCCGCAGGCAAGAAATCGAACGCACCAGCTGCAGGAATC 658
consensus_4441#1      CCGCGGACGCTTAATCGCGCTCGCGTGTGT------TCTAGTAGACGATTTTTCGGAAA- 598
                       ***      ** ***   * * **   *       ** *    ** *  *   ****  

consensus_4441#0      GTTGCAATGATCGCCCAACCTAAGCACGAAAACGGAACGCGATCTATCACGAAA 712
consensus_4441#1      -----AATGCCTGCCCAA---AAACACAAAAC---------------------- 622
                           ****   ******   ** *** ***