cluster # 4460

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Anopheles gambiae
cluster # 4460 cluster # 4460 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4460#0 length = 1270 sequences # 2

consensus_4460#1 length = 633 sequences # 1

consensusID : consensus_4460#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1270
fasta sequence

                              [GATCGAATGATAGAAATTCTCATAAATGTGCTATTAACAGATCCAAGCACTGCCACCATAGTATGTATAATCACGCCTATTTGTTCACCAAAAGGACTGCAGTTGCCAATACCATCAAACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGGTTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAACTTTCCAACCGTGAGCGCCAGTCTAAATGTCTGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACCAACAATTGGATACAAGGAAATGCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGGCATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCGATGTTCCGGCAATGATCCGCAACGAACCAGACGTTATGAGTTATTGGCTTTGGTTAGGCGCTGCACTTGGCACAGGTTTCGGCATTCTGGGTGGTGTGATTACCGCCATCGCATCTGTACTTAAGTCGGCATCGGCATCAAAGAAAACTGGCACTATGGTGGTGCTGCTAGTAAGCAACCTATTCACCGGTTTCTCCCAGACAATTGCATTTGTTTGCTGGCTGGTACAGTTCTACAACTACCTCACCCACAACGTTCTGCTTGCAGAANATCGTAACAATAGCTGGTACAGTACCNGGCTGGTAGTACTGGGATCCAGTTTCTACTTTATACCCGCGGGTATTGTGTTGGTAGTGGTTAATTTAATTTTACTGATTGTCGCGACGCGTCTGGAACAACGGGAAAGGAAAAAGTTCCTAAGTCCTCCAACTGATGATAAAACCCAAGGCGCGATCATGTTATACTAAAACTGCAATGCGGAATGTTTACATATTGTCGTACAATCTCTTTACTTACTCTACCAATACTCAAATTCACAAATTCATTAATTTTTGAATGTATTATCTAAAAATAAGGATGGTTTTTAAATCATGCCATAAGATGAACTAAAGACAAATGAACACAATCCACGTGAAGTTGTGGTAGTTTTAGCTACTTGCGGGTAGAGTAGATATCCACCAGTACCGTTTTAATTTTACCATTTCGGGCCAGACCTGATTTTAATCTGCGTAAGATACTATTAGGAATTCAATAATTCTTTTACCATGAAAACGAAAGCATATTTTTAACATGAAAATAGCTACTTCAAGCTTATGAAATAAAAACAAATATTTTGTAG]

[+] EMBL BX626450             [GATCGAATGATAGAAATTCTCATAAATGTGCTATTAACAGATCCAAGCACTGCCACCATAGTATGTATAATCACGCCTATTTGTTCACCAAAAGGACTGCAGTTGCCAATACCATCAAACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGGTTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAACTTTCCAACCGTGAGCGCCAGTCTAAATGTCTGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACCAACAATTGGATACAAGGAAATGCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGGCATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCGATGTTCCGGCAATGATCCGCAACGAACCAGACGTTATGAGTTATTGGCTTTGGTTAGGCGCTGCACTTGGCACAGGTTTCGGCATTCTGGGTGGTGTGATTACCGCCATCGCATCTGTACTTAAGTCGGCATCGGCATCAAAGAAAACTGGCACTATGGTGGTGCTGCTAGTAAGCAACCTATTCACCGGTTTCTCCCAGACAATTGCATTTGTTTGCTGGCTGGTACAGTTCTACAACTACCTCACCCACAACGTTCTGCTTGCAGAANATCGTAACAATAGCTGGTACAGTACCNGGCTGGTAGTACTGGGATCCAGTTTCTACTTTATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX613334             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGCTAGTAAGCAACCTATTCACCGGTTTCTCCCAGACAATTGCATTTGTTTGCTGGCTGGTACAGTTCTACAACTACCTCACCCACAACGTTCTGCTTGCAGAAGATCGTAACAATAGCTGGTACAGTACCGGGCTGGTAGTACTGGGATCCAGTTTCTACTTTATACCCGCGGGTATTGTGTTGGTAGTGGTTAATTTAATTTTACTGATTGTCGCGACGCGTCTGGAACAACGGGAAAGGAAAAAGTTCCTAAGTCCTCCAACTGATGATAAAACCCAAGGCGCGATCATGTTATACTAAAACTGCAATGCGGAATGTTTACATATTGTCGTACAATCTCTTTACTTACTCTACCAATACTCAAATTCACAAATTCATTAATTTTTGAATGTATTATCTAAAAATAAGGATGGTTTTTAAATCATGCCATAAGATGAACTAAAGACAAATGAACACAATCCACGTGAAGTTGTGGTAGTTTTAGCTACTTGCGGGTAGAGTAGATATCCACCAGTACCGTTTTAATTTTACCATTTCGGGCCAGACCTGATTTTAATCTGCGTAAGATACTATTAGGAATTCAATAATTCTTTTACCATGAAAACGAAAGCATATTTTTAACATGAAAATAGCTACTTCAAGCTTATGAAATAAAAACAAATATTTTGTAG]




>consensus_4460#0
GATCGAATGATAGAAATTCTCATAAATGTGCTATTAACAGATCCAAGCACTGCCACCATA
GTATGTATAATCACGCCTATTTGTTCACCAAAAGGACTGCAGTTGCCAATACCATCAAAC
GATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGGTTTA
TTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAACTTTC
CAACCGTGAGCGCCAGTCTAAATGTCTGCCTGATCGTTGGATTATTAGTGGCCAGCCTCA
CGACCAACAATTGGATACAAGGAAATGCAAAGCGGCGAAATTATAATGAATCAAACGGGC
AGGTCAATTTTGGACTGTTTTCTGGGCATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGG
ACCATAAAATCGATGTTCCGGCAATGATCCGCAACGAACCAGACGTTATGAGTTATTGGC
TTTGGTTAGGCGCTGCACTTGGCACAGGTTTCGGCATTCTGGGTGGTGTGATTACCGCCA
TCGCATCTGTACTTAAGTCGGCATCGGCATCAAAGAAAACTGGCACTATGGTGGTGCTGC
TAGTAAGCAACCTATTCACCGGTTTCTCCCAGACAATTGCATTTGTTTGCTGGCTGGTAC
AGTTCTACAACTACCTCACCCACAACGTTCTGCTTGCAGAANATCGTAACAATAGCTGGT
ACAGTACCNGGCTGGTAGTACTGGGATCCAGTTTCTACTTTATACCCGCGGGTATTGTGT
TGGTAGTGGTTAATTTAATTTTACTGATTGTCGCGACGCGTCTGGAACAACGGGAAAGGA
AAAAGTTCCTAAGTCCTCCAACTGATGATAAAACCCAAGGCGCGATCATGTTATACTAAA
ACTGCAATGCGGAATGTTTACATATTGTCGTACAATCTCTTTACTTACTCTACCAATACT
CAAATTCACAAATTCATTAATTTTTGAATGTATTATCTAAAAATAAGGATGGTTTTTAAA
TCATGCCATAAGATGAACTAAAGACAAATGAACACAATCCACGTGAAGTTGTGGTAGTTT
TAGCTACTTGCGGGTAGAGTAGATATCCACCAGTACCGTTTTAATTTTACCATTTCGGGC
CAGACCTGATTTTAATCTGCGTAAGATACTATTAGGAATTCAATAATTCTTTTACCATGA
AAACGAAAGCATATTTTTAACATGAAAATAGCTACTTCAAGCTTATGAAATAAAAACAAA
TATTTTGTAG

consensusID : consensus_4460#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [GTATGTATAATTCACGCCTATTCTGTTCACCAAAAGAGACTGCAGTTGCCAATACCATCAAACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGGATTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAACTTTCCAACCGTGAGCGCCAGTCTAAATGTCGTATATGTTCTACGCTCATTTTGCTCCTTGTAAAGACAAGTGACGACGTATAAAGAAAAATAACGTTTGAAAAGTGCTTAACGAACATCAATCTTGAAACCATAGAGCCTCAAAACACGCAGCATTGTGTTTGTGACTTTTTTCACCAGCTGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACTAACAATTGGATACAAGGAAATGCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGGCATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCTATGTTCCGGCAATGATCCGCAACGAACCAGACGTTATGTGTTATTGGCTTTGGTTAGGCGCTGCACTTGGTTTTTTTTTCGGCATTCTGGGTGGTGTGATTACCGCC]

[+] EMBL CNS08RIM             [GTATGTATAATTCACGCCTATTCTGTTCACCAAAAGAGACTGCAGTTGCCAATACCATCAAACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGGATTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAACTTTCCAACCGTGAGCGCCAGTCTAAATGTCGTATATGTTCTACGCTCATTTTGCTCCTTGTAAAGACAAGTGACGACGTATAAAGAAAAATAACGTTTGAAAAGTGCTTAACGAACATCAATCTTGAAACCATAGAGCCTCAAAACACGCAGCATTGTGTTTGTGACTTTTTTCACCAGCTGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACTAACAATTGGATACAAGGAAATGCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGGCATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCTATGTTCCGGCAATGATCCGCAACGAACCAGACGTTATGTGTTATTGGCTTTGGTTAGGCGCTGCACTTGGTTTTTTTTTCGGCATTCTGGGTGGTGTGATTACCGCC]




>consensus_4460#1
GTATGTATAATTCACGCCTATTCTGTTCACCAAAAGAGACTGCAGTTGCCAATACCATCA
AACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGGA
TTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAAC
TTTCCAACCGTGAGCGCCAGTCTAAATGTCGTATATGTTCTACGCTCATTTTGCTCCTTG
TAAAGACAAGTGACGACGTATAAAGAAAAATAACGTTTGAAAAGTGCTTAACGAACATCA
ATCTTGAAACCATAGAGCCTCAAAACACGCAGCATTGTGTTTGTGACTTTTTTCACCAGC
TGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACTAACAATTGGATACAAGGAAAT
GCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGG
CATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCTATGTTCCGGCAATG
ATCCGCAACGAACCAGACGTTATGTGTTATTGGCTTTGGTTAGGCGCTGCACTTGGTTTT
TTTTTCGGCATTCTGGGTGGTGTGATTACCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4460#0      GATCGAATGATAGAAATTCTCATAAATGTGCTATTAACAGATCCAAGCACTGCCACCATA 60
consensus_4460#1      ------------------------------------------------------------
                                                                                  

consensus_4460#0      GTATGTATAAT-CACGCCTATT-TGTTCACCAAAAG-GACTGCAGTTGCCAATACCATCA 117
consensus_4460#1      GTATGTATAATTCACGCCTATTCTGTTCACCAAAAGAGACTGCAGTTGCCAATACCATCA 60
                      *********** ********** ************* ***********************

consensus_4460#0      AACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGG- 176
consensus_4460#1      AACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGGA 120
                      *********************************************************** 

consensus_4460#0      TTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAAC 236
consensus_4460#1      TTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAAC 180
                      ************************************************************

consensus_4460#0      TTTCCAACCGTGAGCGCCAGTCTAAATGTC------------------------------ 266
consensus_4460#1      TTTCCAACCGTGAGCGCCAGTCTAAATGTCGTATATGTTCTACGCTCATTTTGCTCCTTG 240
                      ******************************                              

consensus_4460#0      ------------------------------------------------------------
consensus_4460#1      TAAAGACAAGTGACGACGTATAAAGAAAAATAACGTTTGAAAAGTGCTTAACGAACATCA 300
                                                                                  

consensus_4460#0      ------------------------------------------------------------
consensus_4460#1      ATCTTGAAACCATAGAGCCTCAAAACACGCAGCATTGTGTTTGTGACTTTTTTCACCAGC 360
                                                                                  

consensus_4460#0      TGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACCAACAATTGGATACAAGGAAAT 326
consensus_4460#1      TGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACTAACAATTGGATACAAGGAAAT 420
                      ************************************** *********************

consensus_4460#0      GCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGG 386
consensus_4460#1      GCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGG 480
                      ************************************************************

consensus_4460#0      CATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCGATGTTCCGGCAATG 446
consensus_4460#1      CATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCTATGTTCCGGCAATG 540
                      ********************************************* **************

consensus_4460#0      ATCCGCAACGAACCAGACGTTATGAGTTATTGGCTTTGGTTAGGCGCTGCACTTGGCACA 506
consensus_4460#1      ATCCGCAACGAACCAGACGTTATGTGTTATTGGCTTTGGTTAGGCGCTGCACTTGGTTTT 600
                      ************************ *******************************    

consensus_4460#0      GGTTTCGGCATTCTGGGTGGTGTGATTACCGCCATCGCATCTGTACTTAAGTCGGCATCG 566
consensus_4460#1      TTTTTCGGCATTCTGGGTGGTGTGATTACCGCC--------------------------- 633
                        *******************************                           

consensus_4460#0      GCATCAAAGAAAACTGGCACTATGGTGGTGCTGCTAGTAAGCAACCTATTCACCGGTTTC 626
consensus_4460#1      ------------------------------------------------------------
                                                                                  

consensus_4460#0      TCCCAGACAATTGCATTTGTTTGCTGGCTGGTACAGTTCTACAACTACCTCACCCACAAC 686
consensus_4460#1      ------------------------------------------------------------
                                                                                  

consensus_4460#0      GTTCTGCTTGCAGAANATCGTAACAATAGCTGGTACAGTACCNGGCTGGTAGTACTGGGA 746
consensus_4460#1      ------------------------------------------------------------
                                                                                  

consensus_4460#0      TCCAGTTTCTACTTTATACCCGCGGGTATTGTGTTGGTAGTGGTTAATTTAATTTTACTG 806
consensus_4460#1      ------------------------------------------------------------
                                                                                  

consensus_4460#0      ATTGTCGCGACGCGTCTGGAACAACGGGAAAGGAAAAAGTTCCTAAGTCCTCCAACTGAT 866
consensus_4460#1      ------------------------------------------------------------
                                                                                  

consensus_4460#0      GATAAAACCCAAGGCGCGATCATGTTATACTAAAACTGCAATGCGGAATGTTTACATATT 926
consensus_4460#1      ------------------------------------------------------------
                                                                                  

consensus_4460#0      GTCGTACAATCTCTTTACTTACTCTACCAATACTCAAATTCACAAATTCATTAATTTTTG 986
consensus_4460#1      ------------------------------------------------------------
                                                                                  

consensus_4460#0      AATGTATTATCTAAAAATAAGGATGGTTTTTAAATCATGCCATAAGATGAACTAAAGACA 1046
consensus_4460#1      ------------------------------------------------------------
                                                                                  

consensus_4460#0      AATGAACACAATCCACGTGAAGTTGTGGTAGTTTTAGCTACTTGCGGGTAGAGTAGATAT 1106
consensus_4460#1      ------------------------------------------------------------
                                                                                  

consensus_4460#0      CCACCAGTACCGTTTTAATTTTACCATTTCGGGCCAGACCTGATTTTAATCTGCGTAAGA 1166
consensus_4460#1      ------------------------------------------------------------
                                                                                  

consensus_4460#0      TACTATTAGGAATTCAATAATTCTTTTACCATGAAAACGAAAGCATATTTTTAACATGAA 1226
consensus_4460#1      ------------------------------------------------------------
                                                                                  

consensus_4460#0      AATAGCTACTTCAAGCTTATGAAATAAAAACAAATATTTTGTAG 1270
consensus_4460#1      --------------------------------------------