cluster # 4466

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Anopheles gambiae
cluster # 4466 cluster # 4466 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4466#0 length = 633 sequences # 2

consensus_4466#1 length = 516 sequences # 1

consensusID : consensus_4466#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence

                              [GGTAGTCAAAAATACACAACAAACACATAAAGATTCTTCTTTGCATAGCGAGCATCAATTAGTTTACAAACGATAATGGCCTGGATGGCAAACGGAATAGTTTCCATATTATTTTGTTTCAAAGGATCACATTTTCTTCCAAAGATATACCCAGCTACTACATGCATGGTGAGAGCACCGCTAGCCCACTAACTTGAAAACTACTTGTGCCTTTATCTGTTTGCCGTTTTGCCGATCTAGTTCTGCAGTGGTAGTCGAAGAAATGTTTACAGCATTTTCATGGAATAGTTCTTTTACAAGTGTTATTGTTTTGTTGCAAGCCACAATTGTTGGTCGCTATAATTGTAACACGATTGTAATACACGTTTAGTTTGTCACGTTAGAGTGAATATTTTGTGTCGCTTTTGTTCGGCTGTGATGGCTTTTGTTTTGAGGAGGTTATTAGTTTCTTATTTTGAAGCTATTTCTGCTCACGATCAAATGGTTTTAACTGAAGACGTCTTGTTTGATACAAGTTTTACGCAACTATGATCGAAGAATCTACACGCTAAACACCTACCCAAACAGAAAGAGCTCAATTCGAAAGAGAGAAGTAGCGACGTGATCTGGCACAAAATGTAGCGGAAAAGCAGA]

[+] EMBL BX611935             [GGTAGTCAAAAATACACAACAAACACATAAAGATTCTTCTTTGCATAGCGAGCATCAATTAGTTTACAAACGATAATGGCCTGGATGGCAAACGGAATAGTTTCCATATTATTTTGTTTCAAAGGATCACATTTTCTTCCAAAGATATACCCAGCTACTACATGCATGGTGAGAGCACCGCTAGCCCACTAACTTGAAAACTACTTGTGCCTTTATCTGTTTGCCGTTTTGCCGATCTAGTTCTGCAGTGGTAGTCGAAGAAATGTTTACAGCATTTTCATGGAATAGTTCTTTTACAAGTGTTATTGTTTTGTTGCAAGCCACAATTGTTGGTCGCTATAATTGTAACACGATTGTAATACACGTTTAGTTTGTCACGTTAGAGTGAATATTTTGTGTCGCTTTTGTTCGGCTGTGATGGCTTTTGTTTTGAGGAGGTTATTAGTTTCTTATTTTGAAGCTATTTCTGCTCACGATCAAATGGTTTTAACTGAAGACGTCTTGTTTGATACAAGTTTTACGCAACTATGATCGAAGAATCTACACGCTAAACACCTACCCAAACAGAAAGAGCTCAATTCGAAAGAGAGAAGTAGCGACGTGATCTGGCACAAAATGTAGCGGAAAAGCAGA]
[+] EMBL BX609491             [         AAATACACAACAAACACATAAAGATTCTTCTTTGCATAGCGAGCATCAATTAGTTTACAAACGATAATGGCCTGGATGGCAAACGGAATAGTTTCCATATTATTTTGTTTCAAAGGATCACATTTTCTTCCAAAGATATACCCAGCTACTACATGCATGGTGAGAGCACCGCTAGCCCACTAACTTGAAAACTACTTGTGCCTTTATCTGTTTGCCGTTTTGCCGATCTAGTTCTGCAGTGGTAGTCGAAGAAATGTTTACAGCATTTTCATGGAATAGTTCTTTTACA                                                                                                                                                                                                                                                                                                                                               ]




>consensus_4466#0
GGTAGTCAAAAATACACAACAAACACATAAAGATTCTTCTTTGCATAGCGAGCATCAATT
AGTTTACAAACGATAATGGCCTGGATGGCAAACGGAATAGTTTCCATATTATTTTGTTTC
AAAGGATCACATTTTCTTCCAAAGATATACCCAGCTACTACATGCATGGTGAGAGCACCG
CTAGCCCACTAACTTGAAAACTACTTGTGCCTTTATCTGTTTGCCGTTTTGCCGATCTAG
TTCTGCAGTGGTAGTCGAAGAAATGTTTACAGCATTTTCATGGAATAGTTCTTTTACAAG
TGTTATTGTTTTGTTGCAAGCCACAATTGTTGGTCGCTATAATTGTAACACGATTGTAAT
ACACGTTTAGTTTGTCACGTTAGAGTGAATATTTTGTGTCGCTTTTGTTCGGCTGTGATG
GCTTTTGTTTTGAGGAGGTTATTAGTTTCTTATTTTGAAGCTATTTCTGCTCACGATCAA
ATGGTTTTAACTGAAGACGTCTTGTTTGATACAAGTTTTACGCAACTATGATCGAAGAAT
CTACACGCTAAACACCTACCCAAACAGAAAGAGCTCAATTCGAAAGAGAGAAGTAGCGAC
GTGATCTGGCACAAAATGTAGCGGAAAAGCAGA

consensusID : consensus_4466#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [CGNGGTTTNAANCGACACCANTGTANAAATCACTCCGTCCAGNACCCTCNGGAACCCCCTAGTTGCAGAGGTACCCCACCTTTAGANNGGGGAGACACAGGGGTGTATAAACTCACACGTGGGTCTACAAATAGTGTAGTCATCTATTGNGGAGATGTCGACTTTATAAACAACAAAACAGAAAACACACTGTGCCCTTGCACANATGTGGTATCTCAAAATATACCCAACAAACACTTATAAGATTCTTCCTTTGCATTANCGAGCCATTCCAACTTAAGGTTTTACCAACGGATTAANTGGCCTGGATGGCAAAAGGAATAGTTTCCATATTATTTCTTTTCCAAAGGATCACATTTTCTTCCAAAAGATATACCCAGCTACTACATGCATGGTGAGAGCACCGCTAGCCCACTAACATGAAAACTACTTGTGCCTTTATCTGTTTGCCGTTTTGCCGATCTAGTTCTGCAGTGGTAGTCGAAGAAATGTTTACAGCGTTTTCATGGAATAGTT]

[+] EMBL AL933465             [CGNGGTTTNAANCGACACCANTGTANAAATCACTCCGTCCAGNACCCTCNGGAACCCCCTAGTTGCAGAGGTACCCCACCTTTAGANNGGGGAGACACAGGGGTGTATAAACTCACACGTGGGTCTACAAATAGTGTAGTCATCTATTGNGGAGATGTCGACTTTATAAACAACAAAACAGAAAACACACTGTGCCCTTGCACANATGTGGTATCTCAAAATATACCCAACAAACACTTATAAGATTCTTCCTTTGCATTANCGAGCCATTCCAACTTAAGGTTTTACCAACGGATTAANTGGCCTGGATGGCAAAAGGAATAGTTTCCATATTATTTCTTTTCCAAAGGATCACATTTTCTTCCAAAAGATATACCCAGCTACTACATGCATGGTGAGAGCACCGCTAGCCCACTAACATGAAAACTACTTGTGCCTTTATCTGTTTGCCGTTTTGCCGATCTAGTTCTGCAGTGGTAGTCGAAGAAATGTTTACAGCGTTTTCATGGAATAGTT]




>consensus_4466#1
CGNGGTTTNAANCGACACCANTGTANAAATCACTCCGTCCAGNACCCTCNGGAACCCCCT
AGTTGCAGAGGTACCCCACCTTTAGANNGGGGAGACACAGGGGTGTATAAACTCACACGT
GGGTCTACAAATAGTGTAGTCATCTATTGNGGAGATGTCGACTTTATAAACAACAAAACA
GAAAACACACTGTGCCCTTGCACANATGTGGTATCTCAAAATATACCCAACAAACACTTA
TAAGATTCTTCCTTTGCATTANCGAGCCATTCCAACTTAAGGTTTTACCAACGGATTAAN
TGGCCTGGATGGCAAAAGGAATAGTTTCCATATTATTTCTTTTCCAAAGGATCACATTTT
CTTCCAAAAGATATACCCAGCTACTACATGCATGGTGAGAGCACCGCTAGCCCACTAACA
TGAAAACTACTTGTGCCTTTATCTGTTTGCCGTTTTGCCGATCTAGTTCTGCAGTGGTAG
TCGAAGAAATGTTTACAGCGTTTTCATGGAATAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4466#0      GGTAGTCAAAAATACACAACAAACACATAAAGATTCTTCTTTGCATAGCGAGCATCAATT 60
consensus_4466#1      CGNGGTTTNAAN----CGACACCANTGTANAAATCACTCCGTCCAGNACCCTCNGGAACC 56
                       *  **   **     * ***      ** * **   **  * **   *   *   **  

consensus_4466#0      AGTTTACAAACGATAATGGCCTGGATGGCAAACGGAATAGTTTCCATATTATTTTGTTTC 120
consensus_4466#1      C-CCTAGTTGCAGAGGTACCCCACCTT-TAGANNGGGGAGACACAGGGGTGTATAAACTC 114
                          **    *     *  **    *   * *  *   **   *     * * *    **

consensus_4466#0      AAAGGATCACATTTTCTTCCAAAGATATACCCAGCTACTACATGCATGGTGAGAGCACCG 180
consensus_4466#1      ACACGTGGG-----TCTACAAATAGTGTAGTCATCTATTGNGGAGATGTCGACTTTA--- 166
                      * * *         *** * **   * **  ** *** *      ***  **    *   

consensus_4466#0      CTAGCCCACTAACTTGAAAACTACTTGTGCCTTTATCTGTTTGCCGTTTTGCCGATCTAG 240
consensus_4466#1      -TAAACAACAAAACAGAAAACACACTGTGCCCTTGCACANATGTGGTATCTCAAA---AT 222
                       **  * ** **   ******    ****** **       **  ** *  *  *   * 

consensus_4466#0      TTCTGCAGTGGTAGTCGAAGAAATGTTTACAGCATTTTCATGGAATAGTTCTTTTACAAG 300
consensus_4466#1      ATACCCAACAAACACTTATAAGATTCTTCCTTTGCATTANCGAGCCATTCCAACTTAAGG 282
                       *   **          *  * **  ** *      **   *    * * *   *  * *

consensus_4466#0      TGTTATTGTTTTGTTGCAAGCCACAATTGTTGGTCGCTATAATTGTAACACGATTGTAAT 360
consensus_4466#1      TTTTACCAACGGATTAANTGGCCTGGATGGCAAAAGGAATAGTTTCCATATTATTTCTTT 342
                      * ***        **    * *     **      *  *** **   * *  ***    *

consensus_4466#0      ACACGTTTAGTTTGTCACGTTAGAGTGAATATTTTGTGTCGCTTTTGTTCGGCTGTGATG 420
consensus_4466#1      TCCAAAGGATCACATTTTCTTCCAAAAGATATACCCAGCTACTACATGCATGGTGAGAGC 402
                       *      *     *    **  *    ****     *   **        * ** **  

consensus_4466#0      GCTTTTGTTTTGAGGAGGTTATTAGTTTCTTATTTTGAAGCTATTTCTGCTCACGATCAA 480
consensus_4466#1      ACCGCTAGCCCACTAACATGAA-AACTACTTGTGC-----CTTTATCTGTTTGCCGTTTT 456
                       *   *         *  * *  *  * *** *       ** * **** *  *  *   

consensus_4466#0      ATGGTTTTAACTGAAGACGTCTTGTTTGATACAAGTTTTACGCAACTATGATCGAAGAAT 540
consensus_4466#1      GCCGATCTAGTTCTGCA-GTGGTAGTCGAAGAAATGTTTACAGCGTTTTCATGGAATAGT 515
                         * * **  *    * **  *  * **   **  *****     * * ** *** * *

consensus_4466#0      CTACACGCTAAACACCTACCCAAACAGAAAGAGCTCAATTCGAAAGAGAGAAGTAGCGAC 600
consensus_4466#1      T----------------------------------------------------------- 516
                                                                                  

consensus_4466#0      GTGATCTGGCACAAAATGTAGCGGAAAAGCAGA 633
consensus_4466#1      ---------------------------------