cluster # 4468

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Anopheles gambiae
cluster # 4468 cluster # 4468 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4468#0 length = 818 sequences # 2

consensus_4468#1 length = 664 sequences # 1

consensusID : consensus_4468#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 818
fasta sequence

                              [GGCCAGAATCGGCACGNTTGGACGCGTGTCCGCGTTGGTTGCGCTAGCGCTTGCGTAAAGCTTTGCTTGCGTTGCTTAGTCCTCTGATTGGTGCCGTTTGGTTTGGTGTGGAAGCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTCTAATTGAATTACACAGTTTACGCGCACACGACATTTTTGGAAAGGAAAAGTGCGCGTGAAACTTACCACACCGGAGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTGAGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAGCGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACCCCGTTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGCGTACCGNTACCACCCGTGAGCATGAGCGTCGTGGACGTCGTTTGCGGTGGCCTATCGATACACTTGGAATCGCGAGATCGTGTTCAACTCGCCGAAGAAGCTCGGTGAAAGAGGACGACCGGGTGGCCGTTAGTGCGTACCGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAGAGAGAGAGAGAGAGGAAGAGAGGAAGAGAAGAAGAGGGCAACAAAAATAACACAGTCCAAGGACCTTTAGCACGAGTCGAAACCCCATTACGCTTGTACAACGGCCAATGCTTTTTTGAGTAGGAAAACGCCACGTAAAACGTGCAGAATAAAACGAACACTTTTGTGAATTGCGAAGGAGA]

[+] EMBL BX468130             [GGCCAGAATCGGCACGNTTGGACGCGTGTCCGCGTTGGTTGCGCTAGCGCTTGCGTAAAGCTTTGCTTGCGTTGCTTAGTCCTCTGATTGGTGCCGTTTGGTTTGGTGTGGAAGCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTCTAATTGAATTACACAGTTTACGCGCACACGACATTTTTGGAAAGGAAAAGTGCGCGTGAAACTTACCACACCGGAGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTGAGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAGCGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACCCCGTTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGCGTACCGNTACCACCCGTGAGCATGAGCGTCGTGGACGTCGTTTGCGGTGGCCTATCGATACACTTGGAATCGCGAGATCGTGTTCAACTCGCCGAAGAAGCTCGGTGAAAGAGGACGACCGGGTGGCCGTTA                                                                                                                                                                                                                                       ]
[+] EMBL BX626327             [                              CGCG TGGTTGCGCTAGCGCTTGCGTAAAGCTTTGCTTGCGTTGCTTAGTCCTCTGATTGGTGCCGTTTGGTTTGGTGTGGAAGCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTCTAATTGAATTACACAGTTTACGCGCACACGACATTTTTGGAAAGGAAAAGTGCGCGTGAAACTTACCACACCGGAGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTGAGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAGCGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACCCC TTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGC TACCGCTACCACCCGTGAGCATGAGCGTCGTGGCCGTCG TTGCGGTGGCCTATCGATACACTTGGAATCGCGAGATCGTGTTCAACTC CC  AGAAGCT GGTG AAGA GACGACC GGTGG CGTTGGTGCGTACCGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAGAGAGAGAGAGAGAGGAAGAGAGGAAGAGAAGAAGAGGGCAACAAAAATAACACAGTCCAAGGACCTTTAGCACGAGTCGAAACCCCATTACGCTTGTACAACGGCCAATGCTTTTTTGAGTAGGAAAACGCCACGTAAAACGTGCAGAATAAAACGAACACTTTTGTGAATTGCGAAGGAGA]




>consensus_4468#0
GGCCAGAATCGGCACGNTTGGACGCGTGTCCGCGTTGGTTGCGCTAGCGCTTGCGTAAAG
CTTTGCTTGCGTTGCTTAGTCCTCTGATTGGTGCCGTTTGGTTTGGTGTGGAAGCTTCTG
TGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTCTAATTGA
ATTACACAGTTTACGCGCACACGACATTTTTGGAAAGGAAAAGTGCGCGTGAAACTTACC
ACACCGGAGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTGAGCGGAGGTGTATGAAG
CATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAGCGATACCAGGACCCGGA
AGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACCCCGTTTTTCGCGCCCTG
TAGCAACGGGGCTGGCAAGATTGGGCATACAGTGCGTACCGNTACCACCCGTGAGCATGA
GCGTCGTGGACGTCGTTTGCGGTGGCCTATCGATACACTTGGAATCGCGAGATCGTGTTC
AACTCGCCGAAGAAGCTCGGTGAAAGAGGACGACCGGGTGGCCGTTAGTGCGTACCGTGC
TTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAGAGAGAGAGAGAGAGGAAGAGAGGA
AGAGAAGAAGAGGGCAACAAAAATAACACAGTCCAAGGACCTTTAGCACGAGTCGAAACC
CCATTACGCTTGTACAACGGCCAATGCTTTTTTGAGTAGGAAAACGCCACGTAAAACGTG
CAGAATAAAACGAACACTTTTGTGAATTGCGAAGGAGA

consensusID : consensus_4468#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTCGCGTGTCCGCGTGGTTGCGCTAGCGCTTGCGTAAAGCTTTGCTTGCGTTGCTTATTCTTCTGATTGGTGCCGTTTGGTTTGGTGTGGAAGCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTCTAATTGAATTACACAGTTTACGCGCACACGACATTTTTAGAAAGGAAAAGTGCGCGTGAAACTTACCACACCGGAGTGTGTGTGTGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTGAGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAGCGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACCCCTTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGCTACCGCTACCACCCGTGAGCATGAGCGTCGTGGCCGTCGTTGCGGTGGCCTATCGATACACTTGGAATCGCGAGATCGTGTTCAACTCCCAGAAGCTGGTGAAGAGACGACCGGTGGCGTTGGTGCGTACCGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAAAGAGAGAGGAAGAGAGGAAGAGA]

[+] EMBL BM655671             [CCGCCCACGCGTCCGCCCACGCGTCCGGTCGCGTGTCCGCGTGGTTGCGCTAGCGCTTGCGTAAAGCTTTGCTTGCGTTGCTTATTCTTCTGATTGGTGCCGTTTGGTTTGGTGTGGAAGCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTCTAATTGAATTACACAGTTTACGCGCACACGACATTTTTAGAAAGGAAAAGTGCGCGTGAAACTTACCACACCGGAGTGTGTGTGTGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTGAGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAGCGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACCCCTTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGCTACCGCTACCACCCGTGAGCATGAGCGTCGTGGCCGTCGTTGCGGTGGCCTATCGATACACTTGGAATCGCGAGATCGTGTTCAACTCCCAGAAGCTGGTGAAGAGACGACCGGTGGCGTTGGTGCGTACCGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAAAGAGAGAGGAAGAGAGGAAGAGA]




>consensus_4468#1
CCGCCCACGCGTCCGCCCACGCGTCCGGTCGCGTGTCCGCGTGGTTGCGCTAGCGCTTGC
GTAAAGCTTTGCTTGCGTTGCTTATTCTTCTGATTGGTGCCGTTTGGTTTGGTGTGGAAG
CTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTCT
AATTGAATTACACAGTTTACGCGCACACGACATTTTTAGAAAGGAAAAGTGCGCGTGAAA
CTTACCACACCGGAGTGTGTGTGTGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTGA
GCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAGC
GATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACCC
CTTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGCTACCGCTACC
ACCCGTGAGCATGAGCGTCGTGGCCGTCGTTGCGGTGGCCTATCGATACACTTGGAATCG
CGAGATCGTGTTCAACTCCCAGAAGCTGGTGAAGAGACGACCGGTGGCGTTGGTGCGTAC
CGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAAAGAGAGAGGAAGAGAGGAA
GAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4468#0      -------GGCCAGAATCGGCACGNTTGGACGCGTGTCCGCGTTGGTTGCGCTAGCGCTTG 53
consensus_4468#1      CCGCCCACGCGTCCGCCCACGCGTCCGGTCGCGTGTCCGCGT-GGTTGCGCTAGCGCTTG 59
                              **      *  * **   ** ************* *****************

consensus_4468#0      CGTAAAGCTTTGCTTGCGTTGCTTAGTCCTCTGATTGGTGCCGTTTGGTTTGGTGTGGAA 113
consensus_4468#1      CGTAAAGCTTTGCTTGCGTTGCTTATTCTTCTGATTGGTGCCGTTTGGTTTGGTGTGGAA 119
                      ************************* ** *******************************

consensus_4468#0      GCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTC 173
consensus_4468#1      GCTTCTGTGCTTTGTTTTTACTTCGGCAGCCGATTATTCAAACAAATACGACAAGTGTTC 179
                      ************************************************************

consensus_4468#0      TAATTGAATTACACAGTTTACGCGCACACGACATTTTTGGAAAGGAAAAGTGCGCGTGAA 233
consensus_4468#1      TAATTGAATTACACAGTTTACGCGCACACGACATTTTTAGAAAGGAAAAGTGCGCGTGAA 239
                      ************************************** *********************

consensus_4468#0      ACTTACCACACCGGAGTGTG----------CGTGTCCCGTGTGTCCGTGTGGCTTCGGTG 283
consensus_4468#1      ACTTACCACACCGGAGTGTGTGTGTGTGTGCGTGTCCCGTGTGTCCGTGTGGCTTCGGTG 299
                      ********************          ******************************

consensus_4468#0      AGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAG 343
consensus_4468#1      AGCGGAGGTGTATGAAGCATAAGAAGGTCGTCCGCTGTCGTCTGGTGTTTGCCGGTGGAG 359
                      ************************************************************

consensus_4468#0      CGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACC 403
consensus_4468#1      CGATACCAGGACCCGGAAGTTTCATGTAAAAAGTGTGTTTGTGTGTGCGGGATCCTAACC 419
                      ************************************************************

consensus_4468#0      CCGTTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGCGTACCGNT 463
consensus_4468#1      CC-TTTTTCGCGCCCTGTAGCAACGGGGCTGGCAAGATTGGGCATACAGTGC-TACCGCT 477
                      ** ************************************************* ***** *

consensus_4468#0      ACCACCCGTGAGCATGAGCGTCGTGGACGTCGTTTGCGGTGGCCTATCGATACACTTGGA 523
consensus_4468#1      ACCACCCGTGAGCATGAGCGTCGTGGCCGTCGTT-GCGGTGGCCTATCGATACACTTGGA 536
                      ************************** ******* *************************

consensus_4468#0      ATCGCGAGATCGTGTTCAACTCGCCGAAGAAGCTCGGTGAAAGAGGACGACCGGGTGGCC 583
consensus_4468#1      ATCGCGAGATCGTGTTCAACTCCC---AGAAGCT-GGTGAAGA--GACGACCGG-TGGC- 588
                      ********************** *   ******* ******    ********* **** 

consensus_4468#0      GTTAGTGCGTACCGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAGAGAGAGA 643
consensus_4468#1      GTTGGTGCGTACCGTGCTTGCTGCTGCCGTCTGAGTCCTTCCGAGCGAGCTAAAGAGAGA 648
                      *** ************************************************ *******

consensus_4468#0      GAGAGAGGAAGAGAGGAAGAGAAGAAGAGGGCAACAAAAATAACACAGTCCAAGGACCTT 703
consensus_4468#1      GGAAGAGAGGAAGAGA-------------------------------------------- 664
                      *  ****    ****                                             

consensus_4468#0      TAGCACGAGTCGAAACCCCATTACGCTTGTACAACGGCCAATGCTTTTTTGAGTAGGAAA 763
consensus_4468#1      ------------------------------------------------------------
                                                                                  

consensus_4468#0      ACGCCACGTAAAACGTGCAGAATAAAACGAACACTTTTGTGAATTGCGAAGGAGA 818
consensus_4468#1      -------------------------------------------------------