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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 984 fasta sequence
[AGAATCGNGCACGAGGCGTTGGGCATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGGTTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGCCCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTGGCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTAGGCTACGCGCTGTGTCCCGAGGCTCGGGTGTTAGGTACCATTTCCGTTAAATTATCTTCCATTGTCAGGTTGTTGTAGAAANCGGGGTCCTAGCCTACTTTGGTGGGGAATAAGCTTTAAAACACCCTTTTTTCAAACCAAAAGCCGCCAACNTTGGATTTAAAAGGCCCAAAGGNAAACCTTTTTAAATGGAGACCNACCACAATTAATNGACTTCTTTGCATTNNTATATTCCNNCACAACATTTTTGCACCAAAATTTGGCCAGAACGCACCATTTTCCAAAGNCGTTACACGGGGAAANCCCCCTTNTCCACATTGTATATCCGCCAANACACTTTAATGCCACCTGTNAACACATTCNTTGCT]
[+] EMBL BX467346 [AGAATCGNGCACGAGGCGTTGGGCATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGGTTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGCCCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTGGCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTAGGCTACGCGCTGTGTCCCGAGGCTCGGGTGTTAGGTACCATTTCCGTTAAATTATCTTCCATTGTCAGGTTGTTGTAGAAANCGGGGTCCTAGCCTACTTTGGTGGGGAATAAGCTTTAAAACACCCTTTTTTCAAACCAAAAGCCGCCAACNTTGGATTTAAAAGGCCCAAAGGNAAACCTTTTTAAATGGAGACCNACCACAATTAATNGACTTCTTTGCATTNNTATATTCCNNCACAACATTTTTGCACCAAAATTTGGCCAGAACGCACCATTTTCCAAAGNCGTTACACGGGGAAANCCCCCTTNTCCACATTGTATATCCGCCAANACACTTTAATGCCACCTGTNAACACATTCNTTGCT]
[+] EMBL BX626681 [ ATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGGTTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGCCCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTGGCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTG TTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTA GCTACGCGC ]
consensusID : consensus_4472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[AAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTGGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTAGCTACGCGCTGTGTCCGAGCTCGGTGTTAGTACATTCCGTTAAATTATCTTCATTTGTTAGTTGTGTAGAAACGGCTCTGCTACTTTGTGGGATAGCTTTAAAACACCTGTCAACAAGCGCACT]
[+] EMBL BX628367 [AAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTGGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTAGCTACGCGCTGTGTCCGAGCTCGGTGTTAGTACATTCCGTTAAATTATCTTCATTTGTTAGTTGTGTAGAAACGGCTCTGCTACTTTGTGGGATAGCTTTAAAACACCTGTCAACAAGCGCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4472#0 AGAATCGNGCACGAGGCGTTGGGCATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGG 60
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 TTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGC 120
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 CCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTG 180
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 GCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGAC 240
consensus_4472#1 ----AAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGAC 56
********************************************************
consensus_4472#0 ACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGT 300
consensus_4472#1 ACTCTGCCAGTGGCAGCTGGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGT 116
****************** *****************************************
consensus_4472#0 GAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGA 360
consensus_4472#1 GAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGA 176
************************************************************
consensus_4472#0 GTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGT 420
consensus_4472#1 GTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGT 236
************************************************************
consensus_4472#0 GCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGG 480
consensus_4472#1 GCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGG 296
************************************************************
consensus_4472#0 TTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTTGTGTTTTACTCGAT 540
consensus_4472#1 TTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTT-GTGTTTTACTCGAT 355
********************************************* **************
consensus_4472#0 ATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGT 600
consensus_4472#1 ATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGT 415
************************************************************
consensus_4472#0 ACACACACTCACTGTAGGCTACGCGCTGTGTCCCGAGGCTCGGGTGTTAGGTACCATTTC 660
consensus_4472#1 ACACACACTCACTGTAG-CTACGCGCTGTGTCC--GAGCTCGG-TGTTAG-TAC--ATTC 468
***************** *************** ****** ****** *** ***
consensus_4472#0 CGTTAAATTATCTTCCATTGTCAGGTTGTTGTAGAAANCGGGGTCCTAGCCTACTTTGGT 720
consensus_4472#1 CGTTAAATTATCTTCATTTGTTAG-TTGT-GTAGAAAC---GGCTCTG--CTACTTTGT- 520
*************** **** ** **** ******* ** ** ********
consensus_4472#0 GGGGAATAAGCTTTAAAACACCCTTTTTTCAAACCAAAAGCCGCCAACNTTGGATTTAAA 780
consensus_4472#1 --GGGATA-GCTTTAAAACACC-TGTCAACAAGCGCACT--------------------- 555
** *** ************* * * *** * *
consensus_4472#0 AGGCCCAAAGGNAAACCTTTTTAAATGGAGACCNACCACAATTAATNGACTTCTTTGCAT 840
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 TNNTATATTCCNNCACAACATTTTTGCACCAAAATTTGGCCAGAACGCACCATTTTCCAA 900
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 AGNCGTTACACGGGGAAANCCCCCTTNTCCACATTGTATATCCGCCAANACACTTTAATG 960
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 CCACCTGTNAACACATTCNTTGCT 984
consensus_4472#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||