cluster # 4474

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Anopheles gambiae
cluster # 4474 cluster # 4474 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4474#0 length = 501 sequences # 1

consensus_4474#1 length = 496 sequences # 2

consensusID : consensus_4474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCTTCTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTTTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAATAGTGTTGCAAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGGGAGGTGCTGATCCGCAACGAGCGCGGCACCAAGAA]

[+] EMBL BM627573             [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCTTCTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTTTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAATAGTGTTGCAAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGGGAGGTGCTGATCCGCAACGAGCGCGGCACCAAGAA]




>consensus_4474#0
CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATT
TGTCTTCTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTTTGTGTGTTTATTATCC
AGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAATAGTGTTGCAAAGCGCTTGA
ACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCG
GAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAAT
ATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGC
CGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCC
GGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGGGAGGTGCTGATCCG
CAACGAGCGCGGCACCAAGAA

consensusID : consensus_4474#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 496
fasta sequence

                              [CCGGTTTTCGTCCTGTTCGTTGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCTT-GTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCGCAACGAGCGTGGCACCAAGAA]

[+] EMBL BM645898             [CCGGTTTTCGTCCTGTTCGTTGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCTT GTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCGCAACGAGCGTGGCACCAAGAA]
[+] EMBL AL933467             [                                           ccagGGAAGATTTGTCTTGGTGGCTGCTTAA   TTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCGCAACG                ]




>consensus_4474#1
CCGGTTTTCGTCCTGTTCGTTGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCT
TGTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCCAGCAG
GATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGAACAGT
GAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCA
GCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGT
TTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTA
GCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCA
ACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCGCAACG
AGCGTGGCACCAAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4474#0      CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATT 60
consensus_4474#1      ----CCGGTTTTCGTCCTGTTCGTT-GGTTCGATCTGCGCTACCGCTGCGTTGGAGGATT 55
                          **     **  **    ***  **********************************

consensus_4474#0      TGTCTTCTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTTTGTGTGTTTATTATCC 120
consensus_4474#1      TGTCTTGTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCC 115
                      ****** ************************************ ****************

consensus_4474#0      AGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAATAGTGTTGCAAAGCGCTTGA 180
consensus_4474#1      AGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGA 175
                      **************************************** ******** **********

consensus_4474#0      ACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCG 240
consensus_4474#1      ACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCG 235
                      ************************************************************

consensus_4474#0      GAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAAT 300
consensus_4474#1      GAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAAT 295
                      ************************************************************

consensus_4474#0      ATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGC 360
consensus_4474#1      ATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGC 355
                      ************************************************************

consensus_4474#0      CGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCC 420
consensus_4474#1      CGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCC 415
                      ************************************************************

consensus_4474#0      GGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGGGAGGTGCTGATCCG 480
consensus_4474#1      GGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCG 475
                      ********************************************* **************

consensus_4474#0      CAACGAGCGCGGCACCAAGAA 501
consensus_4474#1      CAACGAGCGTGGCACCAAGAA 496
                      ********* ***********