cluster # 4482

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Anopheles gambiae
cluster # 4482 cluster # 4482 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4482#0 length = 647 sequences # 2

consensus_4482#1 length = 597 sequences # 1

consensusID : consensus_4482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 647
fasta sequence

                              [CCGATTGTGACGTGGTTGAAAATTTAGGACTGAGGAAAAGTGTTTCGTTTGTCCGGCACAAAATTGCATTAGATTTCGTTGAAAAATCCATCCTCGCACGGTGCATCTGGTGGTATTGTGAAGCCGCTTAGATAACGCACACACCAGCCCGGTCCCGGTTATCAGGATGAGCTCGTTTAAGCGAGATAACAAGGAGGAAGATGACGGTGGCAATCCGTGGCAAAACCTGGAGAAGACGTCGGTGCTGCAGGAGACGCTAATGTTCAACGAGACGCCGGTGAACGCACGCAAATGTACACACATCCTCACCAAGATTCTGTACCTGCTCAATCACGGTGAGGTGCTGGGCACTCGGGAAGCGACTGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCGCATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGACGAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCGCGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCAGTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTA]

[+] EMBL BM616326             [CCGATTGTGACGTGGTTGAAAATTTAGGACTGAGGAAAAGTGTTTCGTTTGTCCGGCACAAAATTGCATTAGATTTCGTTGAAAAATCCATCCTCGCACGGTGCATCTGGTGGTATTGTGAAGCCGCTTAGATAACGCACACACCAGCCCGGTCCCGGTTATCAGGATGAGCTCGTTTAAGCGAGATAACAAGGAGGAAGATGACGGTGGCAATCCGTGGCAAAACCTGGAGAAGACGTCGGTGCTGCAGGAGACGCTAATGTTCAACGAGACGCCGGTGAACGCACGCAAATGTACACACATCCTCACCAAGATTCTGTACCTGCTCAATCACGGTGAGGTGCTGGGCACTCGGGAAGCGACTGAGTGTTTCTTCGCG                                                                                                                                                                                                                                                                            ]
[+] EMBL BM579413             [                                      ccgGTTTCGTTTGTCCGGCACAAAATTGCATTAGATTTCGTTGAAAAACCCATCCCCGCACGGTGCAGCTGGTGGTATTGTGAAGCCGCAAAGATAACGCACACACCACCCCGGTCCCGGTTATCAGGATGAGCTCGTTTAAGCGAGATAACAAGGAGGAAGATGACGGTGGCAATCCGTGGCAAAACCTGGAGAAGACGTCGGTGCTGCAGGAGACGCGAATGTTCAACGAGACGCCGGTGAACGCACGCAAATGTACACACATTCTCACCAAGATTCTGTACCTGCTCAATCAGGGTGAGGTGCTGGGCACACGGGAAGCGACGGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCGCATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGACGAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCGCGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCAGTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTA]




>consensus_4482#0
CCGATTGTGACGTGGTTGAAAATTTAGGACTGAGGAAAAGTGTTTCGTTTGTCCGGCACA
AAATTGCATTAGATTTCGTTGAAAAATCCATCCTCGCACGGTGCATCTGGTGGTATTGTG
AAGCCGCTTAGATAACGCACACACCAGCCCGGTCCCGGTTATCAGGATGAGCTCGTTTAA
GCGAGATAACAAGGAGGAAGATGACGGTGGCAATCCGTGGCAAAACCTGGAGAAGACGTC
GGTGCTGCAGGAGACGCTAATGTTCAACGAGACGCCGGTGAACGCACGCAAATGTACACA
CATCCTCACCAAGATTCTGTACCTGCTCAATCACGGTGAGGTGCTGGGCACTCGGGAAGC
GACTGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCG
CATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGAC
GAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCG
CGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCA
GTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTA

consensusID : consensus_4482#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [CCGCGGACGCGTGGGCGCCGGTGAACGCACGCAAATGTACACACATCCTCACCAAGATTCTGTACCTGCTCAATCAGGGTGAGGTGCTGGGCACCCGGGAAGCGACGGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCGCATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGACGAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCGCGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCAGTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTAGCTCGCTCCATCTGGCCAGCACGGCCGGGGAGGTGGTGAAGCGCTGGGCCAACGAGGCGCAGGAAGCGCTGAACAGCGACAACATTATGGTGCAGTACCATGGGCTCGGGCTGCTCTACCACATCCGCAAGGCGGACCGGCTCGCCGTCACCAAGCTGGTGAACAAGCTGACGCGCCAGCACTTGCGCAGCCCGTACGCCACCTGCT]

[+] EMBL BM602966             [CCGCGGACGCGTGGGCGCCGGTGAACGCACGCAAATGTACACACATCCTCACCAAGATTCTGTACCTGCTCAATCAGGGTGAGGTGCTGGGCACCCGGGAAGCGACGGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCGCATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGACGAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCGCGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCAGTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTAGCTCGCTCCATCTGGCCAGCACGGCCGGGGAGGTGGTGAAGCGCTGGGCCAACGAGGCGCAGGAAGCGCTGAACAGCGACAACATTATGGTGCAGTACCATGGGCTCGGGCTGCTCTACCACATCCGCAAGGCGGACCGGCTCGCCGTCACCAAGCTGGTGAACAAGCTGACGCGCCAGCACTTGCGCAGCCCGTACGCCACCTGCT]




>consensus_4482#1
CCGCGGACGCGTGGGCGCCGGTGAACGCACGCAAATGTACACACATCCTCACCAAGATTC
TGTACCTGCTCAATCAGGGTGAGGTGCTGGGCACCCGGGAAGCGACGGAGTGTTTCTTCG
CGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCGCATGGTGTACCTCGGCA
TCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGACGAGCTCGCTGACGAAGG
ACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCGCGCCCTGTGCAGCATCA
CGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCAGTGCATCGTCGACCGGA
ACGCGCCCGTGTCGAGCGGTGCGCTCGTTAGCTCGCTCCATCTGGCCAGCACGGCCGGGG
AGGTGGTGAAGCGCTGGGCCAACGAGGCGCAGGAAGCGCTGAACAGCGACAACATTATGG
TGCAGTACCATGGGCTCGGGCTGCTCTACCACATCCGCAAGGCGGACCGGCTCGCCGTCA
CCAAGCTGGTGAACAAGCTGACGCGCCAGCACTTGCGCAGCCCGTACGCCACCTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4482#0      CCGATTGTGACGTGGTTGAAAATTTAGGACTGAGGAAAAGTGTTTCGTTTGTCCGGCACA 60
consensus_4482#1      ------------------------------------------------------------
                                                                                  

consensus_4482#0      AAATTGCATTAGATTTCGTTGAAAAATCCATCCTCGCACGGTGCATCTGGTGGTATTGTG 120
consensus_4482#1      ------------------------------------------------------------
                                                                                  

consensus_4482#0      AAGCCGCTTAGATAACGCACACACCAGCCCGGTCCCGGTTATCAGGATGAGCTCGTTTAA 180
consensus_4482#1      ------------------------------------------------------------
                                                                                  

consensus_4482#0      GCGAGATAACAAGGAGGAAGATGACGGTGGCAATCCGTGGCAAAACCTGGAGAAGACGTC 240
consensus_4482#1      ------------------------------------------------------------
                                                                                  

consensus_4482#0      GGTGCTGCAGGAGACGCTAATGTTCAACGAGACGCCGGTGAACGCACGCAAATGTACACA 300
consensus_4482#1      -------------CCGCGGACGCGTG----GGCGCCGGTGAACGCACGCAAATGTACACA 43
                                    ***  * *        * ****************************

consensus_4482#0      CATCCTCACCAAGATTCTGTACCTGCTCAATCACGGTGAGGTGCTGGGCACTCGGGAAGC 360
consensus_4482#1      CATCCTCACCAAGATTCTGTACCTGCTCAATCAGGGTGAGGTGCTGGGCACCCGGGAAGC 103
                      ********************************* ***************** ********

consensus_4482#0      GACTGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCG 420
consensus_4482#1      GACGGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCG 163
                      *** ********************************************************

consensus_4482#0      CATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGAC 480
consensus_4482#1      CATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGAC 223
                      ************************************************************

consensus_4482#0      GAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCG 540
consensus_4482#1      GAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCG 283
                      ************************************************************

consensus_4482#0      CGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCA 600
consensus_4482#1      CGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCA 343
                      ************************************************************

consensus_4482#0      GTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTA------------- 647
consensus_4482#1      GTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTAGCTCGCTCCATCT 403
                      ***********************************************             

consensus_4482#0      ------------------------------------------------------------
consensus_4482#1      GGCCAGCACGGCCGGGGAGGTGGTGAAGCGCTGGGCCAACGAGGCGCAGGAAGCGCTGAA 463
                                                                                  

consensus_4482#0      ------------------------------------------------------------
consensus_4482#1      CAGCGACAACATTATGGTGCAGTACCATGGGCTCGGGCTGCTCTACCACATCCGCAAGGC 523
                                                                                  

consensus_4482#0      ------------------------------------------------------------
consensus_4482#1      GGACCGGCTCGCCGTCACCAAGCTGGTGAACAAGCTGACGCGCCAGCACTTGCGCAGCCC 583
                                                                                  

consensus_4482#0      --------------
consensus_4482#1      GTACGCCACCTGCT 597