cluster # 4490

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Anopheles gambiae
cluster # 4490 cluster # 4490 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4490#0 length = 656 sequences # 1

consensus_4490#1 length = 620 sequences # 1
consensus_4490#2 length = 370 sequences # 1

consensusID : consensus_4490#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [GTGCGCGAAAAGCAGGAAGCTTTTGCTCTTCCCAAAAATAGGGCGCGAAAAATAGAAAGATGGCAATTTCGTGCTTGAAGAACGCCAACTCCAACTCAGCCGAGAACACGTTCCTCTACACGCCGTGCCACTGTCCGGCGGAAAAGCTATTGCGCCAGCAGCAGGTCCGCTGTGAGAAGCCTCGCATGCCCCACCGGGTGTCGAGAAGAACGCAATACCTGGCCAAACCACGTAATGCGCGCGGCAGGTACGAAATAAGGGCCGTGAACCGTAGCACCAAGCAGACGGAGCTGTGTCGCTCGTACAAGGAACCGTACGCCTCGAAACGCATCCAGCAGCTGGCATTGCCGCACGTGCGGAAGCTGGTGGCCGCTCAGCAGGAGTACCGTCGCTTTATCGCCCGCCGCCAGCAGGACCAGCTCGAGAAGCGCATCAAGAAGAGCATCTTTACCGTGTACAGTCGGCTGGCGAACGTGCAGCTGCCAGCGGTCGACAAGCTGAAGGGCATGTCAGCGGACGAGTGGCAAAAGCATCAGGACTGGCTGGTACGCAACGCCCAACCGAAGCAGGCTCCCGCGCCCGAACCACCGAAGCGCGAGCGGAAACCGTTGGCCGCCTTGATCGGGCGTATCGATAGCTTGTCGGAACCACGGTTC]

[+] EMBL BX625530             [GTGCGCGAAAAGCAGGAAGCTTTTGCTCTTCCCAAAAATAGGGCGCGAAAAATAGAAAGATGGCAATTTCGTGCTTGAAGAACGCCAACTCCAACTCAGCCGAGAACACGTTCCTCTACACGCCGTGCCACTGTCCGGCGGAAAAGCTATTGCGCCAGCAGCAGGTCCGCTGTGAGAAGCCTCGCATGCCCCACCGGGTGTCGAGAAGAACGCAATACCTGGCCAAACCACGTAATGCGCGCGGCAGGTACGAAATAAGGGCCGTGAACCGTAGCACCAAGCAGACGGAGCTGTGTCGCTCGTACAAGGAACCGTACGCCTCGAAACGCATCCAGCAGCTGGCATTGCCGCACGTGCGGAAGCTGGTGGCCGCTCAGCAGGAGTACCGTCGCTTTATCGCCCGCCGCCAGCAGGACCAGCTCGAGAAGCGCATCAAGAAGAGCATCTTTACCGTGTACAGTCGGCTGGCGAACGTGCAGCTGCCAGCGGTCGACAAGCTGAAGGGCATGTCAGCGGACGAGTGGCAAAAGCATCAGGACTGGCTGGTACGCAACGCCCAACCGAAGCAGGCTCCCGCGCCCGAACCACCGAAGCGCGAGCGGAAACCGTTGGCCGCCTTGATCGGGCGTATCGATAGCTTGTCGGAACCACGGTTC]




>consensus_4490#0
GTGCGCGAAAAGCAGGAAGCTTTTGCTCTTCCCAAAAATAGGGCGCGAAAAATAGAAAGA
TGGCAATTTCGTGCTTGAAGAACGCCAACTCCAACTCAGCCGAGAACACGTTCCTCTACA
CGCCGTGCCACTGTCCGGCGGAAAAGCTATTGCGCCAGCAGCAGGTCCGCTGTGAGAAGC
CTCGCATGCCCCACCGGGTGTCGAGAAGAACGCAATACCTGGCCAAACCACGTAATGCGC
GCGGCAGGTACGAAATAAGGGCCGTGAACCGTAGCACCAAGCAGACGGAGCTGTGTCGCT
CGTACAAGGAACCGTACGCCTCGAAACGCATCCAGCAGCTGGCATTGCCGCACGTGCGGA
AGCTGGTGGCCGCTCAGCAGGAGTACCGTCGCTTTATCGCCCGCCGCCAGCAGGACCAGC
TCGAGAAGCGCATCAAGAAGAGCATCTTTACCGTGTACAGTCGGCTGGCGAACGTGCAGC
TGCCAGCGGTCGACAAGCTGAAGGGCATGTCAGCGGACGAGTGGCAAAAGCATCAGGACT
GGCTGGTACGCAACGCCCAACCGAAGCAGGCTCCCGCGCCCGAACCACCGAAGCGCGAGC
GGAAACCGTTGGCCGCCTTGATCGGGCGTATCGATAGCTTGTCGGAACCACGGTTC

consensusID : consensus_4490#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [AGATCGCCACGAGNGTACACCATTGTTTTAGGGCCATCCAATCATTCCAGTTCAGTGCGCGAAAAGCAGGAAGCTTTTGCTCTTCCCAAAAATAGGGCGCGAAAAATAGAAAGATGGCAATTTCGTGCTTGAAGAACGCCAACTCCAACTCAGCCGAGAACACGTTCCTCTACACGCCGTGCCACTGTCCGGCGGAAAAGCTATTGCGCCAGCAGCAGGTCCGCTGTGAGAAGCCTCGCATGACCCACCGGGTGTCGAGAAGAACGCAATACCTGGNCAAAGACCACGTAATGCGCGCGGCAGGTACGAACATAAGGGCCGTGAACCGTAGCACCAAAGCAGACGGGAGCTGTGTCGCTCGTACAAAGGAACCGGGTACGGCCCTGCGAAAACGCATCCANGCGAGCGTGGGCAATGTGCNCCGGCAACAGGTGGCAGGAAAGACATTGGGTGGGACGGGTTCAAGGCAAGGGAGTTACCCGTCCGGACTTTTAATCCAGCCCCGGGCCAGNCGANGCCAGGGACCCCAGGACTACGAGAAAGCGCAATTTCAANGNACGGAGCCACTCGTAANTACCCAGGTGGTACACAAGGGNCCAGGGCATAGNGCGGAAAACCGG]

[+] EMBL BX466148             [AGATCGCCACGAGNGTACACCATTGTTTTAGGGCCATCCAATCATTCCAGTTCAGTGCGCGAAAAGCAGGAAGCTTTTGCTCTTCCCAAAAATAGGGCGCGAAAAATAGAAAGATGGCAATTTCGTGCTTGAAGAACGCCAACTCCAACTCAGCCGAGAACACGTTCCTCTACACGCCGTGCCACTGTCCGGCGGAAAAGCTATTGCGCCAGCAGCAGGTCCGCTGTGAGAAGCCTCGCATGACCCACCGGGTGTCGAGAAGAACGCAATACCTGGNCAAAGACCACGTAATGCGCGCGGCAGGTACGAACATAAGGGCCGTGAACCGTAGCACCAAAGCAGACGGGAGCTGTGTCGCTCGTACAAAGGAACCGGGTACGGCCCTGCGAAAACGCATCCANGCGAGCGTGGGCAATGTGCNCCGGCAACAGGTGGCAGGAAAGACATTGGGTGGGACGGGTTCAAGGCAAGGGAGTTACCCGTCCGGACTTTTAATCCAGCCCCGGGCCAGNCGANGCCAGGGACCCCAGGACTACGAGAAAGCGCAATTTCAANGNACGGAGCCACTCGTAANTACCCAGGTGGTACACAAGGGNCCAGGGCATAGNGCGGAAAACCGG]




>consensus_4490#1
AGATCGCCACGAGNGTACACCATTGTTTTAGGGCCATCCAATCATTCCAGTTCAGTGCGC
GAAAAGCAGGAAGCTTTTGCTCTTCCCAAAAATAGGGCGCGAAAAATAGAAAGATGGCAA
TTTCGTGCTTGAAGAACGCCAACTCCAACTCAGCCGAGAACACGTTCCTCTACACGCCGT
GCCACTGTCCGGCGGAAAAGCTATTGCGCCAGCAGCAGGTCCGCTGTGAGAAGCCTCGCA
TGACCCACCGGGTGTCGAGAAGAACGCAATACCTGGNCAAAGACCACGTAATGCGCGCGG
CAGGTACGAACATAAGGGCCGTGAACCGTAGCACCAAAGCAGACGGGAGCTGTGTCGCTC
GTACAAAGGAACCGGGTACGGCCCTGCGAAAACGCATCCANGCGAGCGTGGGCAATGTGC
NCCGGCAACAGGTGGCAGGAAAGACATTGGGTGGGACGGGTTCAAGGCAAGGGAGTTACC
CGTCCGGACTTTTAATCCAGCCCCGGGCCAGNCGANGCCAGGGACCCCAGGACTACGAGA
AAGCGCAATTTCAANGNACGGAGCCACTCGTAANTACCCAGGTGGTACACAAGGGNCCAG
GGCATAGNGCGGAAAACCGG

consensusID : consensus_4490#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [CAGAATNCGGCACGAGGAGCAGGTAAGCTTTTGCTCTTCCCAAAAATAGGGCGCGAAAAATAGAAAGATGGCAATTTCGTGCTTGAAGAACGCCAACTCCAACTCAGCCGAGAACACGTTCCTCTACACGCCGTGCCACTGTCCGGCGGAAAAGCTATTGCGCCAGCAGCAGGTCCGCTGTGAGAAGCCTCGCATGCCCCACCGGGTGTCGAGAAGAACGCCAATACCTGGCCNAANCACGTAATGCGCGCGGCAGGTACGAAATAAGGGCCGTGAAANCCGTAACCCCCAAAGCAGACGGNAGCTGTGTCGCTCGTAACAAAAGAAACCCGTACGCCCTCGNNAACGCATCCAGCAGCTTGGGCATTGC]

[+] EMBL BX619605             [CAGAATNCGGCACGAGGAGCAGGTAAGCTTTTGCTCTTCCCAAAAATAGGGCGCGAAAAATAGAAAGATGGCAATTTCGTGCTTGAAGAACGCCAACTCCAACTCAGCCGAGAACACGTTCCTCTACACGCCGTGCCACTGTCCGGCGGAAAAGCTATTGCGCCAGCAGCAGGTCCGCTGTGAGAAGCCTCGCATGCCCCACCGGGTGTCGAGAAGAACGCCAATACCTGGCCNAANCACGTAATGCGCGCGGCAGGTACGAAATAAGGGCCGTGAAANCCGTAACCCCCAAAGCAGACGGNAGCTGTGTCGCTCGTAACAAAAGAAACCCGTACGCCCTCGNNAACGCATCCAGCAGCTTGGGCATTGC]




>consensus_4490#2
CAGAATNCGGCACGAGGAGCAGGTAAGCTTTTGCTCTTCCCAAAAATAGGGCGCGAAAAA
TAGAAAGATGGCAATTTCGTGCTTGAAGAACGCCAACTCCAACTCAGCCGAGAACACGTT
CCTCTACACGCCGTGCCACTGTCCGGCGGAAAAGCTATTGCGCCAGCAGCAGGTCCGCTG
TGAGAAGCCTCGCATGCCCCACCGGGTGTCGAGAAGAACGCCAATACCTGGCCNAANCAC
GTAATGCGCGCGGCAGGTACGAAATAAGGGCCGTGAAANCCGTAACCCCCAAAGCAGACG
GNAGCTGTGTCGCTCGTAACAAAAGAAACCCGTACGCCCTCGNNAACGCATCCAGCAGCT
TGGGCATTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4490#1      AGATCGCCACGAGNGTACACCATTGTTTTAGGGCCATCCAATCATTCCAGTTCAGTGCGC 60
consensus_4490#2      -----------------------------------------------CAGAATNCGGCAC 13
consensus_4490#0      ------------------------------------------------------GTGCGC 6
                                                                              ** *

consensus_4490#1      GAAAAGCAGG-AAGCTTTTGCTCTTCCCAAAAATAGGGCGCGAAAAATAGAAAGATGGCA 119
consensus_4490#2      GAGGAGCAGGTAAGCTTTTGCTCTTCCCAAAAATAGGGCGCGAAAAATAGAAAGATGGCA 73
consensus_4490#0      GAAAAGCAGG-AAGCTTTTGCTCTTCCCAAAAATAGGGCGCGAAAAATAGAAAGATGGCA 65
                      **  ****** *************************************************

consensus_4490#1      ATTTCGTGCTTGAAGAACGCCAACTCCAACTCAGCCGAGAACACGTTCCTCTACACGCCG 179
consensus_4490#2      ATTTCGTGCTTGAAGAACGCCAACTCCAACTCAGCCGAGAACACGTTCCTCTACACGCCG 133
consensus_4490#0      ATTTCGTGCTTGAAGAACGCCAACTCCAACTCAGCCGAGAACACGTTCCTCTACACGCCG 125
                      ************************************************************

consensus_4490#1      TGCCACTGTCCGGCGGAAAAGCTATTGCGCCAGCAGCAGGTCCGCTGTGAGAAGCCTCGC 239
consensus_4490#2      TGCCACTGTCCGGCGGAAAAGCTATTGCGCCAGCAGCAGGTCCGCTGTGAGAAGCCTCGC 193
consensus_4490#0      TGCCACTGTCCGGCGGAAAAGCTATTGCGCCAGCAGCAGGTCCGCTGTGAGAAGCCTCGC 185
                      ************************************************************

consensus_4490#1      ATGACCCACCGGGTGTCGAGAAGAACGC-AATACCTGGNCAAAGACCACGTAATGCGCGC 298
consensus_4490#2      ATGCCCCACCGGGTGTCGAGAAGAACGCCAATACCTGGCCNAAN--CACGTAATGCGCGC 251
consensus_4490#0      ATGCCCCACCGGGTGTCGAGAAGAACGC-AATACCTGGCCAAAC--CACGTAATGCGCGC 242
                      *** ************************ ********* * **   **************

consensus_4490#1      GGCAGGTACGAACATAAGGGCCGTGAA--CCGTAGCACC-AAAGCAGACGGGAGCTGTGT 355
consensus_4490#2      GGCAGGTACGAA-ATAAGGGCCGTGAAANCCGTAACCCCCAAAGCAGACGGNAGCTGTGT 310
consensus_4490#0      GGCAGGTACGAA-ATAAGGGCCGTGAA--CCGTAGCACC--AAGCAGACGG-AGCTGTGT 296
                      ************ **************  ***** * **  ********** ********

consensus_4490#1      CGCTCGTA-CAAAGGAACCGGGTACGGCCCTGCGAAAACGCATCCAN--GCGAGCGTGGG 412
consensus_4490#2      CGCTCGTAACAAAAGAAACCCGTACGCCCT--CGNNAACGCATCCAG--C--AGCTTGGG 364
consensus_4490#0      CGCTCGTA--CAAGGAACC--GTACGCCTC----GAAACGCATCCAGCAGCTGGCATTGC 348
                      ********   ** *** *  ***** *        **********       ** * * 

consensus_4490#1      CA-ATGTGCN----CCGGCAACAGGT-GGCAGGAAAGACATTGGGTGG------------ 454
consensus_4490#2      CA-TTGC----------------------------------------------------- 370
consensus_4490#0      CGCACGTGCGGAAGCTGGTGGCCGCTCAGCAGGAGTACCGTCGCTTTATCGCCCGCCGCC 408
                      *    *                                                      

consensus_4490#1      GACGGGTTCAAGGCAAGGGAGTTACCCGTCCGGAC-TTTTAATCCAGCCCCG--GGCCAG 511
consensus_4490#2      ------------------------------------------------------------
consensus_4490#0      AGCAGGACCAGCTCGAGAAGCGCATCAAGAAGAGCATCTTTACCGTGTACAGTCGGCTGG 468
                                                                                  

consensus_4490#1      NCGANGC-CAGGGACCCCAGGACTACGAG--AAAGCGCAATTTCAANGNACG-GAGCCAC 567
consensus_4490#2      ------------------------------------------------------------
consensus_4490#0      CGAACGTGCAGCTGCCAGCGGTCGACAAGCTGAAGGGCA-TGTCAGCGGACGAGTGGCAA 527
                                                                                  

consensus_4490#1      TCGTAANTACCCAGG-TGGTACACAAGG---GNCCAGGGCATA-------GNGCGGAAAA 616
consensus_4490#2      ------------------------------------------------------------
consensus_4490#0      AAGCATCAGGACTGGCTGGTACGCAACGCCCAACCGAAGCAGGCTCCCGCGCCCGAACCA 587
                                                                                  

consensus_4490#1      CCGG-------------------------------------------------------- 620
consensus_4490#2      ------------------------------------------------------------
consensus_4490#0      CCGAAGCGCGAGCGGAAACCGTTGGCCGCCTTGATCGGGCGTATCGATAGCTTGTCGGAA 647
                                                                                  

consensus_4490#1      ---------
consensus_4490#2      ---------
consensus_4490#0      CCACGGTTC 656