cluster # 4501

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Anopheles gambiae
cluster # 4501 cluster # 4501 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4501#0 length = 1132 sequences # 2

consensus_4501#1 length = 671 sequences # 1

consensusID : consensus_4501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1132
fasta sequence

                              [CCGCCCACGCGTCCGGCCGTGGGACAATCGCTCGCCTGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAGAAAAAAAACGCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTAGTGTGCGTGCGCCTATTCATCTCGACGAGCAGAGGCAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTAGCAGAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTCGCTATTTTGATACGCCACAAGCGGATGATTCGTGTGCCGATCGGAACAATATACGGTATGCGGAGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACGTACAACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACGAAACGGAAAGTGTGTTGTGTTGTAGTGTGCGGTGCGGCATACCGTTCTAACGCAGTGAAATAAAGCAATAGAGGCGCATTCGGTGAAAAGCTCAACATTCTTCTCCCCCCGTTTTGTGCATTCACAACAACCTGCAAGCGGCAGCGGCGTCGCATCGCTCACGAATCCTCTCGGGGCACCATCTAGAACGAATCCGGAGGAAGCGCGCGACGTGTGTGAGGATGTTGTCATCGGGCGCATCGGAAGAACTAAAAATAATTCTTTAAACGCCGGCGGCACAACCAGGAATAGAACTTGTGTGTTTTCTTTTTTCCCTTCATCGCCCGCATGCTGAAATAGTGGCGTTTTGTTGGGACATCAAAGTGAGTGTGTGTGTGTGTTGGAGCAAACCGAAAAGGACGAAGTTACGAGGCACAAAAAACACAGCGCTGCCAACGATTACACACGCCAAGCAACCACCACTACACAAGCAGCAAAGGATCACACGCATACAAACGCAGCACACACACTCGTCGGTGCACACAAAGGAAAACCCCCGCACGGTCAGCAGCTGTCGTCGCTTCGTTCCTGCCAGGAGCGCATTGTGTGCGTGCGTGTGTGCGCGTGTGTGGCAAAAGAATAAAGGATTAAAGCCACACCACACCAACCACCGCTTTTGTTTATTGTGCGCGTGTGT]

[+] EMBL BM586730             [CCGCCCACGCGTCCGGCCGTGGGACAATCGCTCGCCTGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAGAAAAAAAACGCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTAGTGTGCGTGCGCCTATTCATCTCGACGAGCAGAGGCAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTAGCAGAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTCGCTATTTTGATACGCCACAAGCGGATGATTCGTGTGCCGATCGGAACAATATACGGTATGCGGAGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACGTACAACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACGAAACGGAAAGTGTGTTGTGTTGTAGTGTGCGGTGCGGCATACCGTTCTAACGCAGTGAAATAAAGCAATAGAGGCGCATTCGGTGAAAAGCTCAACATTCTTCTCCCCCCGTTTTGTGCATTCACAACAACCTGCAAGCGGCAGCGGCGTCGCATCGCTCACGAATCCTCTCGGGGCACCATCTAGAACGAATCCGGAGGAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM644483             [                                                                                                                                                                                                                                                                                                                                                                                                                                                               ccgGCGACGAAACGGAAAGTGTGTTGTGTTGTAGTGTGCGGTGCGGCATACCGTTCTAACGCAGTGAAATAAAGCAATAGAGGCGCATTCGGTGAAAAGCTCAACATTCTTCTCCCCCCGTTTTGTGCATTCACAACAACCTGCAAGCGGCAGCGGCGTCGCATCGCTCACGAATCCTCTCGGGGCACCATCTAGAACGAATCCGGAGGAAGCGCGCGACGTGTGTGAGGATGTTGTCATCGGGCGCATCGGAAGAACTAAAAATAATTCTTTAAACGCCGGCGGCACAACCAGGAATAGAACTTGTGTGTTTTCTTTTTTCCCTTCATCGCCCGCATGCTGAAATAGTGGCGTTTTGTTGGGACATCAAAGTGAGTGTGTGTGTGTGTTGGAGCAAACCGAAAAGGACGAAGTTACGAGGCACAAAAAACACAGCGCTGCCAACGATTACACACGCCAAGCAACCACCACTACACAAGCAGCAAAGGATCACACGCATACAAACGCAGCACACACACTCGTCGGTGCACACAAAGGAAAACCCCCGCACGGTCAGCAGCTGTCGTCGCTTCGTTCCTGCCAGGAGCGCATTGTGTGCGTGCGTGTGTGCGCGTGTGTGGCAAAAGAATAAAGGATTAAAGCCACACCACACCAACCACCGCTTTTGTTTATTGTGCGCGTGTGT]




>consensus_4501#0
CCGCCCACGCGTCCGGCCGTGGGACAATCGCTCGCCTGCGGAAGCACACCCCGCTGCGTG
AAAAGCCAAGCGGAACGGATCGAAATAGCAGAAAAAAAACGCAAGCGAAGAAGTGTTCTC
GTTGGTGTGCGGTAGTGTGCGTGCGCCTATTCATCTCGACGAGCAGAGGCAAACACTGCA
CAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTAGCAGAGAACGGCAAAGAAGGAAAT
GCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTCGCTATTTTGATACGCCACAAGCGG
ATGATTCGTGTGCCGATCGGAACAATATACGGTATGCGGAGTAGCATCGGACAGTTGAAA
GGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACGTACAACTGGGGATTCTTCACACAA
ACACACACATACGTACGCATTTACACACAAGCGACGAAACGGAAAGTGTGTTGTGTTGTA
GTGTGCGGTGCGGCATACCGTTCTAACGCAGTGAAATAAAGCAATAGAGGCGCATTCGGT
GAAAAGCTCAACATTCTTCTCCCCCCGTTTTGTGCATTCACAACAACCTGCAAGCGGCAG
CGGCGTCGCATCGCTCACGAATCCTCTCGGGGCACCATCTAGAACGAATCCGGAGGAAGC
GCGCGACGTGTGTGAGGATGTTGTCATCGGGCGCATCGGAAGAACTAAAAATAATTCTTT
AAACGCCGGCGGCACAACCAGGAATAGAACTTGTGTGTTTTCTTTTTTCCCTTCATCGCC
CGCATGCTGAAATAGTGGCGTTTTGTTGGGACATCAAAGTGAGTGTGTGTGTGTGTTGGA
GCAAACCGAAAAGGACGAAGTTACGAGGCACAAAAAACACAGCGCTGCCAACGATTACAC
ACGCCAAGCAACCACCACTACACAAGCAGCAAAGGATCACACGCATACAAACGCAGCACA
CACACTCGTCGGTGCACACAAAGGAAAACCCCCGCACGGTCAGCAGCTGTCGTCGCTTCG
TTCCTGCCAGGAGCGCATTGTGTGCGTGCGTGTGTGCGCGTGTGTGGCAAAAGAATAAAG
GATTAAAGCCACACCACACCAACCACCGCTTTTGTTTATTGTGCGCGTGTGT

consensusID : consensus_4501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [CCGCGAGCGAACAGACGCACTCATTTTTTCCCTGTCTTCTCGCGAGGAACAAATTCTACCCCGTCGTGTGTGCGGCAGCCATCTTTATTTTGGAAACGTGAATATTTGTCAGCATTCACGGGCTTAGCACAGGCAATTTGCGGATCGTCGGAAGCGTGTTTCGTGTCGGCGAGTGGCAAATCGAACGGTAAACGGTGCGAAAGTGGTCAGAGGTGGTGTGCCGTGGGACAATCGCTCGCCTGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAAAAAAAAGCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTGGTGTGCGTGCGCCTATTCATCTCGACGAGCAGAGGGAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTAGCAGAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTCGCTATTTTGATACGCCACAAGCGGATGGTTCGTGTGTCGATCGGAACAATTCACGGTATGCGGAGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACGTACAACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACGAAACGGAAAAGTGT]

[+] EMBL BM643899             [CCGCGAGCGAACAGACGCACTCATTTTTTCCCTGTCTTCTCGCGAGGAACAAATTCTACCCCGTCGTGTGTGCGGCAGCCATCTTTATTTTGGAAACGTGAATATTTGTCAGCATTCACGGGCTTAGCACAGGCAATTTGCGGATCGTCGGAAGCGTGTTTCGTGTCGGCGAGTGGCAAATCGAACGGTAAACGGTGCGAAAGTGGTCAGAGGTGGTGTGCCGTGGGACAATCGCTCGCCTGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAAAAAAAAGCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTGGTGTGCGTGCGCCTATTCATCTCGACGAGCAGAGGGAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTAGCAGAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTCGCTATTTTGATACGCCACAAGCGGATGGTTCGTGTGTCGATCGGAACAATTCACGGTATGCGGAGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACGTACAACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACGAAACGGAAAAGTGT]




>consensus_4501#1
CCGCGAGCGAACAGACGCACTCATTTTTTCCCTGTCTTCTCGCGAGGAACAAATTCTACC
CCGTCGTGTGTGCGGCAGCCATCTTTATTTTGGAAACGTGAATATTTGTCAGCATTCACG
GGCTTAGCACAGGCAATTTGCGGATCGTCGGAAGCGTGTTTCGTGTCGGCGAGTGGCAAA
TCGAACGGTAAACGGTGCGAAAGTGGTCAGAGGTGGTGTGCCGTGGGACAATCGCTCGCC
TGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAAAAAAA
AGCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTGGTGTGCGTGCGCCTATTCATCTCGA
CGAGCAGAGGGAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTAGCA
GAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTCGCT
ATTTTGATACGCCACAAGCGGATGGTTCGTGTGTCGATCGGAACAATTCACGGTATGCGG
AGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACGTAC
AACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACGAAA
CGGAAAAGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4501#0      ------------------------------------------------------------
consensus_4501#1      CCGCGAGCGAACAGACGCACTCATTTTTTCCCTGTCTTCTCGCGAGGAACAAATTCTACC 60
                                                                                  

consensus_4501#0      ------------------------------------------------------------
consensus_4501#1      CCGTCGTGTGTGCGGCAGCCATCTTTATTTTGGAAACGTGAATATTTGTCAGCATTCACG 120
                                                                                  

consensus_4501#0      ------------------------------------------------------------
consensus_4501#1      GGCTTAGCACAGGCAATTTGCGGATCGTCGGAAGCGTGTTTCGTGTCGGCGAGTGGCAAA 180
                                                                                  

consensus_4501#0      -----------------------CCGCCC-ACGCGTCCGGCCGTGGGACAATCGCTCGCC 36
consensus_4501#1      TCGAACGGTAAACGGTGCGAAAGTGGTCAGAGGTGGTGTGCCGTGGGACAATCGCTCGCC 240
                                               * *  * * *    *********************

consensus_4501#0      TGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAGAAAAA 96
consensus_4501#1      TGCGGAAGCACACCCCGCTGCGTGAAAAGCCAAGCGGAACGGATCGAAATAGCAAAAAAA 300
                      ****************************************************** *****

consensus_4501#0      AAACGCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTAGTGTGCGTGCGCCTATTCATCT 156
consensus_4501#1      A---GCAAGCGAAGAAGTGTTCTCGTTGGTGTGCGGTGGTGTGCGTGCGCCTATTCATCT 357
                      *   ********************************* **********************

consensus_4501#0      CGACGAGCAGAGGCAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTA 216
consensus_4501#1      CGACGAGCAGAGGGAAACACTGCACAGCACAGCTGCAGGCAGGCAGGCAGGGCAGCATTA 417
                      ************* **********************************************

consensus_4501#0      GCAGAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTC 276
consensus_4501#1      GCAGAGAACGGCAAAGAAGGAAATGCGCCAATGTTTGTTTCGCGTGCTGCATCCAAGTTC 477
                      ************************************************************

consensus_4501#0      GCTATTTTGATACGCCACAAGCGGATGATTCGTGTGCCGATCGGAACAATATACGGTATG 336
consensus_4501#1      GCTATTTTGATACGCCACAAGCGGATGGTTCGTGTGTCGATCGGAACAATTCACGGTATG 537
                      *************************** ******** *************  ********

consensus_4501#0      CGGAGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACG 396
consensus_4501#1      CGGAGTAGCATCGGACAGTTGAAAGGATTCCCCCTGGCTCTCGTTGCGGAGCTTTAAACG 597
                      ************************************************************

consensus_4501#0      TACAACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACG 456
consensus_4501#1      TACAACTGGGGATTCTTCACACAAACACACACATACGTACGCATTTACACACAAGCGACG 657
                      ************************************************************

consensus_4501#0      AAACGGAAAGTGTGTTGTGTTGTAGTGTGCGGTGCGGCATACCGTTCTAACGCAGTGAAA 516
consensus_4501#1      AAACGGAAAA-GTGT--------------------------------------------- 671
                      *********  ****                                             

consensus_4501#0      TAAAGCAATAGAGGCGCATTCGGTGAAAAGCTCAACATTCTTCTCCCCCCGTTTTGTGCA 576
consensus_4501#1      ------------------------------------------------------------
                                                                                  

consensus_4501#0      TTCACAACAACCTGCAAGCGGCAGCGGCGTCGCATCGCTCACGAATCCTCTCGGGGCACC 636
consensus_4501#1      ------------------------------------------------------------
                                                                                  

consensus_4501#0      ATCTAGAACGAATCCGGAGGAAGCGCGCGACGTGTGTGAGGATGTTGTCATCGGGCGCAT 696
consensus_4501#1      ------------------------------------------------------------
                                                                                  

consensus_4501#0      CGGAAGAACTAAAAATAATTCTTTAAACGCCGGCGGCACAACCAGGAATAGAACTTGTGT 756
consensus_4501#1      ------------------------------------------------------------
                                                                                  

consensus_4501#0      GTTTTCTTTTTTCCCTTCATCGCCCGCATGCTGAAATAGTGGCGTTTTGTTGGGACATCA 816
consensus_4501#1      ------------------------------------------------------------
                                                                                  

consensus_4501#0      AAGTGAGTGTGTGTGTGTGTTGGAGCAAACCGAAAAGGACGAAGTTACGAGGCACAAAAA 876
consensus_4501#1      ------------------------------------------------------------
                                                                                  

consensus_4501#0      ACACAGCGCTGCCAACGATTACACACGCCAAGCAACCACCACTACACAAGCAGCAAAGGA 936
consensus_4501#1      ------------------------------------------------------------
                                                                                  

consensus_4501#0      TCACACGCATACAAACGCAGCACACACACTCGTCGGTGCACACAAAGGAAAACCCCCGCA 996
consensus_4501#1      ------------------------------------------------------------
                                                                                  

consensus_4501#0      CGGTCAGCAGCTGTCGTCGCTTCGTTCCTGCCAGGAGCGCATTGTGTGCGTGCGTGTGTG 1056
consensus_4501#1      ------------------------------------------------------------
                                                                                  

consensus_4501#0      CGCGTGTGTGGCAAAAGAATAAAGGATTAAAGCCACACCACACCAACCACCGCTTTTGTT 1116
consensus_4501#1      ------------------------------------------------------------
                                                                                  

consensus_4501#0      TATTGTGCGCGTGTGT 1132
consensus_4501#1      ----------------