cluster # 4515

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Anopheles gambiae
cluster # 4515 cluster # 4515 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4515#0 length = 859 sequences # 2

consensus_4515#1 length = 671 sequences # 1

consensusID : consensus_4515#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 859
fasta sequence

                              [CCGCGACGTGAACATGCGGCGGGTGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCATACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGACATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGCACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGCGCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTCCCGGTGGCGAAGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGGACGTTCCGAGCTATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGGGCGCAGAAGATACGGGCCATCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATCTGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGAACGTGTGCATAGCTTGCCAACCGAACGGTCTGTATGCGGTAGGGTGTCGTTCGTACACGTTGCTGCTCGACCCGAGGACACTGCAGGCTGTG-AAAAGATTGCATCACGCTACAGCGGCTGCGGGATACGTTCGGCAAGCTTCCAGGGCAACATCCTTACCATCGGCACTGGCATGGGAATGCTGATGTTCTTCGACATACGGGCCGGCAAATATCTCGAGTCGTGCATTAACTCTTCCCGTACGGTTGTACTGAAAGCTAGCAAAGGCTATGTGGCCCAATTTCCGGACGAGGAAATTGACGGTTTCCAGCAGAACAAGTACTC]

[+] EMBL BM639524             [CCGCGACGTGAACATGCGGCGGGTGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCATACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGACATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGCACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGCGCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTCCCGGTGGCGAAGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGGACGTTCCGAGCTATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGGGCGCAGAAGATACGGGCCATCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATCTGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGAACGTGTGCATAGCTTGCCAACCGAACGGTCTGTATGCGGTAGGGTGTCGTTCGTACACGTTGCTGCTCGACCCGAGGACACTGCAGGCTGTG AAAAGATTGCATCACGCTACAGCGGCTGCGGGATACGTTCGGCAAGCTTCCAGGGCAACATCCTT                                                                                                                                                                       ]
[+] EMBL BM632907             [                                                                                                                                                                                           ccgGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGCGCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTCCCGGTGGCGAAGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGGACGTTCCGAGCTATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGGGCGCAGAAGATACGGGCCATCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATCTGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGAACGTGTGCATAGCTTGCCAACCGAACGGTCTGTATGCGGTAGGGTGTCGTTCGTACACGTTGCTGCTCGACCCGAGGACACTGCAGGCTGTGAAAAAGATTGCATCACGCTACAGCGGCTGCGGGATACGTTCGGCAAGCTTCCAGGGCAACATCCTTACCATCGGCACTGGCATGGGAATGCTGATGTTCTTCGACATACGGGCCGGCAAATATCTCGAGTCGTGCATTAACTCTTCCCGTACGGTTGTACTGAAAGCTAGCAAAGGCTATGTGGCCCAATTTCCGGACGAGGAAATTGACGGTTTCCAGCAGAACAAGTACTC]




>consensus_4515#0
CCGCGACGTGAACATGCGGCGGGTGGACGCAATACCGACGCTGCCGAACAGCCACGGCGC
CAGCCCCGACACGCAGTCCGGCATACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCT
GGCGACATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCG
CACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCG
CGCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTCCCGGTGGCG
AAGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGGACGTTCCGAGCTATGCG
CACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGGGCGCAGAAGATACGGGCCATCTGC
TTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATCTGTTC
AACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGAACGTG
TGCATAGCTTGCCAACCGAACGGTCTGTATGCGGTAGGGTGTCGTTCGTACACGTTGCTG
CTCGACCCGAGGACACTGCAGGCTGTGAAAAGATTGCATCACGCTACAGCGGCTGCGGGA
TACGTTCGGCAAGCTTCCAGGGCAACATCCTTACCATCGGCACTGGCATGGGAATGCTGA
TGTTCTTCGACATACGGGCCGGCAAATATCTCGAGTCGTGCATTAACTCTTCCCGTACGG
TTGTACTGAAAGCTAGCAAAGGCTATGTGGCCCAATTTCCGGACGAGGAAATTGACGGTT
TCCAGCAGAACAAGTACTC

consensusID : consensus_4515#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [CCGCCCACGCGTCCGGCAACATCAACAAGGTGTTCTGCTCGCAGTGGCTCAGCAACCGGCAGGTCGTGTTCGGTACCAAGTGCAATAAGCTGATGGTGTACGACGTGAACATGCGGCGGGTGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCATACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGACCGGCGCGCGCCACTCGGCCGACATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGCACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGCGCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTTCCGGTGGCGAAGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGCAGCAGGACGTTCCGAGCTATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGAGCGCAGAAGATACGGGCCATCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATCTGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGAACGTGTGCATA]

[+] EMBL BM576273             [CCGCCCACGCGTCCGGCAACATCAACAAGGTGTTCTGCTCGCAGTGGCTCAGCAACCGGCAGGTCGTGTTCGGTACCAAGTGCAATAAGCTGATGGTGTACGACGTGAACATGCGGCGGGTGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCATACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGACCGGCGCGCGCCACTCGGCCGACATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGCACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGCGCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTTCCGGTGGCGAAGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGCAGCAGGACGTTCCGAGCTATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGAGCGCAGAAGATACGGGCCATCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATCTGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGAACGTGTGCATA]




>consensus_4515#1
CCGCCCACGCGTCCGGCAACATCAACAAGGTGTTCTGCTCGCAGTGGCTCAGCAACCGGC
AGGTCGTGTTCGGTACCAAGTGCAATAAGCTGATGGTGTACGACGTGAACATGCGGCGGG
TGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCA
TACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGACCGGCGCGCGCCACTCGG
CCGACATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGC
ACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGC
GCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTTCCGGTGGCGA
AGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGCAGCAGGACGTTCCGAGCT
ATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGAGCGCAGAAGATACGGGCCA
TCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATC
TGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGA
ACGTGTGCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4515#0      ------------------------------------------------------------
consensus_4515#1      CCGCCCACGCGTCCGGCAACATCAACAAGGTGTTCTGCTCGCAGTGGCTCAGCAACCGGC 60
                                                                                  

consensus_4515#0      -------------------------------------CCGCGACGTGAACATGCGGCGGG 23
consensus_4515#1      AGGTCGTGTTCGGTACCAAGTGCAATAAGCTGATGGTGTACGACGTGAACATGCGGCGGG 120
                                                              ********************

consensus_4515#0      TGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCA 83
consensus_4515#1      TGGACGCAATACCGACGCTGCCGAACAGCCACGGCGCCAGCCCCGACACGCAGTCCGGCA 180
                      ************************************************************

consensus_4515#0      TACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGAC----------------- 126
consensus_4515#1      TACACGCGTGCCAGATCAATCCGAGCCACAGCCTGCTGGCGACCGGCGCGCGCCACTCGG 240
                      *******************************************                 

consensus_4515#0      -----ATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGC 181
consensus_4515#1      CCGACATTGCGCTGTACCGGTTGCCCACGCTCGATCCGCTCTGCATCGGCGAGAACGCGC 300
                           *******************************************************

consensus_4515#0      ACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGC 241
consensus_4515#1      ACCGGGACTGGGTGTTCGATATGTGCTGGCTGGACGATCAGTTCCTGGTGTCCGGGTCGC 360
                      ************************************************************

consensus_4515#0      GCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTCCCGGTGGCGA 301
consensus_4515#1      GCGATACCAAGCTCGCGCTGTGGCGCGTCAACGAAGATCTGATGGACTTTCCGGTGGCGA 420
                      ************************************************* **********

consensus_4515#0      AGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAG------GACGTTCCGAGCT 355
consensus_4515#1      AGGACGCCGAGGAGGAGGGGGACCAGCAGCAGCAGCAGCAGCAGCAGGACGTTCCGAGCT 480
                      *****************************************      *************

consensus_4515#0      ATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGGGCGCAGAAGATACGGGCCA 415
consensus_4515#1      ATGCGCACATCTCGCCGATCGCGGTGAAGGAGTGCCGCGGAGCGCAGAAGATACGGGCCA 540
                      **************************************** *******************

consensus_4515#0      TCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATC 475
consensus_4515#1      TCTGCTTCAACAAGGAGTATCGCGAGCTGGCGCTACTGTCGCTGAACGGCTATATGCATC 600
                      ************************************************************

consensus_4515#0      TGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGA 535
consensus_4515#1      TGTTCAACGCGGAAACGTTCTCGCAAAAGCTGTCCCGGAAGCTGCCGAACTGTCAGGAGA 660
                      ************************************************************

consensus_4515#0      ACGTGTGCATAGCTTGCCAACCGAACGGTCTGTATGCGGTAGGGTGTCGTTCGTACACGT 595
consensus_4515#1      ACGTGTGCATA------------------------------------------------- 671
                      ***********                                                 

consensus_4515#0      TGCTGCTCGACCCGAGGACACTGCAGGCTGTGAAAAGATTGCATCACGCTACAGCGGCTG 655
consensus_4515#1      ------------------------------------------------------------
                                                                                  

consensus_4515#0      CGGGATACGTTCGGCAAGCTTCCAGGGCAACATCCTTACCATCGGCACTGGCATGGGAAT 715
consensus_4515#1      ------------------------------------------------------------
                                                                                  

consensus_4515#0      GCTGATGTTCTTCGACATACGGGCCGGCAAATATCTCGAGTCGTGCATTAACTCTTCCCG 775
consensus_4515#1      ------------------------------------------------------------
                                                                                  

consensus_4515#0      TACGGTTGTACTGAAAGCTAGCAAAGGCTATGTGGCCCAATTTCCGGACGAGGAAATTGA 835
consensus_4515#1      ------------------------------------------------------------
                                                                                  

consensus_4515#0      CGGTTTCCAGCAGAACAAGTACTC 859
consensus_4515#1      ------------------------