cluster # 4518

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Anopheles gambiae
cluster # 4518 cluster # 4518 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4518#0 length = 823 sequences # 2

consensus_4518#1 length = 440 sequences # 1

consensusID : consensus_4518#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 823
fasta sequence

                              [CCGGAACCGTTGCACTGCTTCAACGAAGAAAAAAAAAATACAGCCGCACACGGAGTTAGCATAGCTAGTAGCCGCCGTAAGCAATCAATGAAAACGCATAGCGTACTGTTATCATAAGCTCAATTCAAGCCAGGCAGTGCCAGTGCTGTGAGTGAAAGAGCACGAAGTGGAACGAATCGTCGAGTGCATTTAACGTATCCTAGAACCGGAAAACTCTTCGTCAAGAGTTACAGTAAAAAGAGCACCACATTTACACAAACATCCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAAAACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGCGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGGATTGCATCAGCTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTACGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTGTGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAATATTTCATCGGTCGTGAATCTATTATTATTGTTGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTCCAGAGCAACTGCACCACCATCACCAGTGTTTGTGCGTTAACACTGTCGCGAAGTAGTGATCCTGATAGCGGCAGCAGCAGCAGCGAGGGCATCGTCACAATGCCGAGCAAGCAGACGAATGACGTGCTGGCGGTGGAAGAGCTGGTACACGAAATCCGCGAAAACCTG]

[+] EMBL BM619537             [CCGGAACCGTTGCACTGCTTCAACGAAGAAAAAAAAAATACAGCCGCACACGGAGTTAGCATAGCTAGTAGCCGCCGTAAGCAATCAATGAAAACGCATAGCGTACTGTTATCATAAGCTCAATTCAAGCCAGGCAGTGCCAGTGCTGTGAGTGAAAGAGCACGAAGTGGAACGAATCGTCGAGTGCATTTAACGTATCCTAGAACCGGAAAACTCTTCGTCAAGAGTTACAGTAAAAAGAGCACCACATTTACACAAACATCCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAAAACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGCGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGGATTGCATCAGCTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTACGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTGTGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAATATTTCATC                                                                                                                                                                                                                                                      ]
[+] EMBL BM578078             [                                                                                                                                                            ccgGCACGAAGTGGAACGAATCGTCGAGTGCATTTAACGTATCCTAGAACCGGAAAACTCTTCGTCAAGAGTTACAGTAAAAAGAGCACCACATTTACACAAACATCCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAAAACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGCGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGGATTGCATCAGCTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTACGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTGTGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAATATTTCATCGGTCGTGAATCTATTATTATTGTTGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTCCAGAGCAACTGCACCACCATCACCAGTGTTTGTGCGTTAACACTGTCGCGAAGTAGTGATCCTGATAGCGGCAGCAGCAGCAGCGAGGGCATCGTCACAATGCCGAGCAAGCAGACGAATGACGTGCTGGCGGTGGAAGAGCTGGTACACGAAATCCGCGAAAACCTG]




>consensus_4518#0
CCGGAACCGTTGCACTGCTTCAACGAAGAAAAAAAAAATACAGCCGCACACGGAGTTAGC
ATAGCTAGTAGCCGCCGTAAGCAATCAATGAAAACGCATAGCGTACTGTTATCATAAGCT
CAATTCAAGCCAGGCAGTGCCAGTGCTGTGAGTGAAAGAGCACGAAGTGGAACGAATCGT
CGAGTGCATTTAACGTATCCTAGAACCGGAAAACTCTTCGTCAAGAGTTACAGTAAAAAG
AGCACCACATTTACACAAACATCCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAA
AACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGCGTG
TTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGGATTGCATCAGCTAA
AACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTACGTT
ATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTGTGTG
AGTGCGCAAGCGTGTGTGTAGTTGCAAATATTTCATCGGTCGTGAATCTATTATTATTGT
TGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTCCAGAG
CAACTGCACCACCATCACCAGTGTTTGTGCGTTAACACTGTCGCGAAGTAGTGATCCTGA
TAGCGGCAGCAGCAGCAGCGAGGGCATCGTCACAATGCCGAGCAAGCAGACGAATGACGT
GCTGGCGGTGGAAGAGCTGGTACACGAAATCCGCGAAAACCTG

consensusID : consensus_4518#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [AGATCGCCGAGGCAACATCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAAAACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGTGTGCGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGCATTGCATCAGCTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTACGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTGTGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAATCATTTCATCGGTCGTGAATCTATTATTATTGTTGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTCCAGAGCAACTGCACCACCATCACCA]

[+] EMBL AL931121             [AGATCGCCGAGGCAACATCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAAAACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGTGTGCGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGCATTGCATCAGCTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTACGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTGTGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAATCATTTCATCGGTCGTGAATCTATTATTATTGTTGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTCCAGAGCAACTGCACCACCATCACCA]




>consensus_4518#1
AGATCGCCGAGGCAACATCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAAAACAA
ACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGTGTGCGTGT
TGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGCATTGCATCAGCTAAA
ACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTACGTTA
TATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTGTGTGA
GTGCGCAAGCGTGTGTGTAGTTGCAAATCATTTCATCGGTCGTGAATCTATTATTATTGT
TGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTCCAGAG
CAACTGCACCACCATCACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4518#0      CCGGAACCGTTGCACTGCTTCAACGAAGAAAAAAAAAATACAGCCGCACACGGAGTTAGC 60
consensus_4518#1      ------------------------------------------------------------
                                                                                  

consensus_4518#0      ATAGCTAGTAGCCGCCGTAAGCAATCAATGAAAACGCATAGCGTACTGTTATCATAAGCT 120
consensus_4518#1      ------------------------------------------------------------
                                                                                  

consensus_4518#0      CAATTCAAGCCAGGCAGTGCCAGTGCTGTGAGTGAAAGAGCACGAAGTGGAACGAATCGT 180
consensus_4518#1      ------------------------------------------------------------
                                                                                  

consensus_4518#0      CGAGTGCATTTAACGTATCCTAGAACCGGAAAACTCTTCGTCAAGAGTTACAGTAAAAAG 240
consensus_4518#1      ----------------------------------------------------------AG 2
                                                                                **

consensus_4518#0      AGCACCACATTTACACAAACATCCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAA 300
consensus_4518#1      ATCGCCGAGGCAACAT-------CAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAA 55
                      * * **      ***        *************************************

consensus_4518#0      AACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTG---- 356
consensus_4518#1      AACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGTGTG 115
                      ********************************************************    

consensus_4518#0      CGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGGATTGCATCAG 416
consensus_4518#1      CGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGCATTGCATCAG 175
                      ************************************************* **********

consensus_4518#0      CTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTA 476
consensus_4518#1      CTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTA 235
                      ************************************************************

consensus_4518#0      CGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTG 536
consensus_4518#1      CGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTG 295
                      ************************************************************

consensus_4518#0      TGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAAT-ATTTCATCGGTCGTGAATCTATTATT 595
consensus_4518#1      TGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAATCATTTCATCGGTCGTGAATCTATTATT 355
                      ********************************* **************************

consensus_4518#0      ATTGTTGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTC 655
consensus_4518#1      ATTGTTGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTC 415
                      ************************************************************

consensus_4518#0      CAGAGCAACTGCACCACCATCACCAGTGTTTGTGCGTTAACACTGTCGCGAAGTAGTGAT 715
consensus_4518#1      CAGAGCAACTGCACCACCATCACCA----------------------------------- 440
                      *************************                                   

consensus_4518#0      CCTGATAGCGGCAGCAGCAGCAGCGAGGGCATCGTCACAATGCCGAGCAAGCAGACGAAT 775
consensus_4518#1      ------------------------------------------------------------
                                                                                  

consensus_4518#0      GACGTGCTGGCGGTGGAAGAGCTGGTACACGAAATCCGCGAAAACCTG 823
consensus_4518#1      ------------------------------------------------