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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence
[AGCAGATCGGCACGAGGTGAACGCGGCCGTACAATGAAGTTGCGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGGAGATGACGATGAAAGGTCCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGGCCAACGATGTACACCGCCAAATGCTGAAGCTGAAAGTAAAGACCTTCCACGAACCAGCACTACTACTACTAGAACGGGCCACGAAGAAACGGANAACGGACTGCGTGCTGGAAGTACGTCGTCGTANCGTCAANCAGCAAGCCACCACAGGACAGCCCGTTAAGTACCGCTAAGCCTGCAGATGCAACACTGTCGCCCACCAGCCCGCACAGACCGGGCTACTACGGTCCAGCAAAGCCCCCGCCAACGGTTGTGACCACGACGACGGGGAAACCGACCACCACTTCGAGCACCACGACTACTGAGATGCCCAAAGTGAACGAAAGTCCCACCACCGAGACGCTGCTGTGGAGTGATAAACCGTTTGCCGAGTGGTTCTTGCAAAGCAAGCGCAAGAAGGGTCAGCCGATCTCTTCCCTGAACGTGCAGCTGTTAGATCCGCTGNCACTGCGGGTACTGCAGGACTTTAACCGCGAACCGTA]
[+] EMBL BX469383 [AGCAGATCGGCACGAGGTGAACGCGGCCGTACAATGAAGTTGCGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGGAGATGACGATGAAAGGTCCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGGCCAACGATGTACACCGCCAAATGCTGAAGCTGAAAGTAAAGACCTTCCACGAACCAGCACTACTACTACTAGAACGGGCCACGAAGAAACGGANAACGGACTGCGTGCTGGAAGTACGTCGTCGTANCGTCAAN ]
[+] EMBL BX620326 [ ATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGCAGATGACGATGAAAGGT CAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGA GCCAACGATG ACACCGCCAAATGCTGAAGCTGAAA TAAA ACCTTCCAC AACCACCACTACTACTACTA AACGGCCCAC AA CAAC GACAAC GACTGC TGCTGGAAGTACGTCGTC TA CCTCAACCAGCAAGCCACCACAGGACAGCCCGTTAAGTACCGCTAAGCCTGCAGATGCAACACTGTCGCCCACCAGCCCGCACAGACCGGGCTACTACGGTCCAGCAAAGCCCCCGCCAACGGTTGTGACCACGACGACGGGGAAACCGACCACCACTTCGAGCACCACGACTACTGAGATGCCCAAAGTGAACGAAAGTCCCACCACCGAGACGCTGCTGTGGAGTGATAAACCGTTTGCCGAGTGGTTCTTGCAAAGCAAGCGCAAGAAGGGTCAGCCGATCTCTTCCCTGAACGTGCAGCTGTTAGATCCGCTGNCACTGCGGGTACTGCAGGACTTTAACCGCGAACCGTA]
consensusID : consensus_4531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[GGCCAGAATCGGCACGTGGAGACGCCGTACGAATTGGTCGACTTGCGACGCGCGGCCGTACAATGAAGTTGGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGCAGATGACGATAAAGGTCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGCCAACGATGACACCGCCAAATGCTGAAGCTGAAATAAAACCTTCCACAACCACCACTACTACTACTAAACGGCCACAACAACGACACGACTGCTGCTGGAAGTACGTCGTCTACCTCAACCAGCAAGCCACCACAGGACAGCCCGTTAGTACCGCTAGCCTGCAGATGCAACGACTGTCGCCACCAGCCCGACAGACCGGGCTACTACGGTCCAGCGAAAGCCCCCGGCAACGGTTGTGACCACGACGGACGGGGAAACGAACAGCGAATTTCGAGCACCACGATACTGTCGATTGGCCAAAAGTTGAACGAAAAGTCCCACACGAGACGNTGTGTTGGAAGTGATAAAGCGGNTTTGNCGGAGTGGTTCTTGCAAAAGTAAGCGCAAGAAGGTTCAGCCGAATTCTTNCCTTAAAGGTGCAGTGTTAG]
[+] EMBL BX469823 [GGCCAGAATCGGCACGTGGAGACGCCGTACGAATTGGTCGACTTGCGACGCGCGGCCGTACAATGAAGTTGGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGCAGATGACGATAAAGGTCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGCCAACGATGACACCGCCAAATGCTGAAGCTGAAATAAAACCTTCCACAACCACCACTACTACTACTAAACGGCCACAACAACGACACGACTGCTGCTGGAAGTACGTCGTCTACCTCAACCAGCAAGCCACCACAGGACAGCCCGTTAGTACCGCTAGCCTGCAGATGCAACGACTGTCGCCACCAGCCCGACAGACCGGGCTACTACGGTCCAGCGAAAGCCCCCGGCAACGGTTGTGACCACGACGGACGGGGAAACGAACAGCGAATTTCGAGCACCACGATACTGTCGATTGGCCAAAAGTTGAACGAAAAGTCCCACACGAGACGNTGTGTTGGAAGTGATAAAGCGGNTTTGNCGGAGTGGTTCTTGCAAAAGTAAGCGCAAGAAGGTTCAGCCGAATTCTTNCCTTAAAGGTGCAGTGTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4531#0 -------------------------------AGCAGATCGGCACGAGGTGAACGCGGCCG 29
consensus_4531#1 GGCCAGAATCGGCACGTGGAGACGCCGTACGAATTGGTCGACTTGCGACG--CGCGGCCG 58
* * *** * * * * ********
consensus_4531#0 TACAATGAAGTTGCGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAA 89
consensus_4531#1 TACAATGAAGTTG-GTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAA 117
************* **********************************************
consensus_4531#0 CGATTTACGCATCGGATGCAACCATATCAGGAGATGACGATGAAAGGTCCAGGAGACAGA 149
consensus_4531#1 CGATTTACGCATCGGATGCAACCATATCAGCAGATGACGATAAAGG--TCAGGAGACAGA 175
****************************** ********** ** * ***********
consensus_4531#0 GGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATC 209
consensus_4531#1 GGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATC 235
************************************************************
consensus_4531#0 GAGATGATTCAGTACGAGGCCAACGATGTACACCGCCAAATGCTGAAGCTGAAAGTAAAG 269
consensus_4531#1 GAGATGATTCAGTACGAG-CCAACGATG-ACACCGCCAAATGCTGAAGCTGAAAT--AAA 291
****************** ********* ************************* **
consensus_4531#0 ACCTTCCACGAACCAGCACTACTACTACTAGAACGGGCCACGAAGAAACGGANAACGGAC 329
consensus_4531#1 ACCTTCCAC-AACCACCACTACTACTACTAAAC--GGCCAC-----AACAACGACACGAC 343
********* ***** ************** * ****** *** * ***
consensus_4531#0 TGCGTGCTGGAAGTACGTCGTCGTANCGTCAANCAGCAAGCCACCACAGGACAGCCCGTT 389
consensus_4531#1 TGC-TGCTGGAAGTACGTCGTC-TACC-TCAACCAGCAAGCCACCACAGGACAGCCCGTT 400
*** ****************** ** * **** ***************************
consensus_4531#0 AAGTACCGCTAAGCCTGCAGATGCAAC-ACTGTCGCCCACCAGCCCGCACAGACCGGGCT 448
consensus_4531#1 A-GTACCGCTA-GCCTGCAGATGCAACGACTGTCGCC-ACCAGCCCG-ACAGACCGGGCT 456
* ********* *************** ********* ********* ************
consensus_4531#0 ACTACGGTCCAGC-AAAGCCCCCGCCAACGGTTGTGACCACGACG-ACGGGGAAACCGAC 506
consensus_4531#1 ACTACGGTCCAGCGAAAGCCCCCGGCAACGGTTGTGACCACGACGGACGGGGAAACGAAC 516
************* ********** ******************** ********** **
consensus_4531#0 CACCA-CTTCGAGCACCACGA--CTACTGAGATGCCCAAAGT-GAACGAAAGTCCCACCA 562
consensus_4531#1 AGCGAATTTCGAGCACCACGATACTGTCGATTGGCCAAAAGTTGAACGAAAAGTCCCACA 576
* * ************** ** ** *** ***** ******** ** **
consensus_4531#0 CCGAGACGCTGCTGTGGA-GTGATAAACCG--TTTGCCG-AGTGGTTCTTGCAAA-GCAA 617
consensus_4531#1 C-GAGACGNTGTGTTGGAAGTGATAAAGCGGNTTTGNCGGAGTGGTTCTTGCAAAAGTAA 635
* ****** ** **** ******** ** **** ** *************** * **
consensus_4531#0 GCGCAAGAAGGGTCAGCCGATCTCTTCCCT-GAACGTGCAGCTGTTAGATCCGCTGNCAC 676
consensus_4531#1 GCGCAAGAAGGTTCAGCCGAATTCTTNCCTTAAAGGTGCAG-TGTTAG------------ 682
*********** ******** **** *** ** ****** ******
consensus_4531#0 TGCGGGTACTGCAGGACTTTAACCGCGAACCGTA 710
consensus_4531#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||