cluster # 4547

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Anopheles gambiae
cluster # 4547 cluster # 4547 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4547#0 length = 825 sequences # 2

consensus_4547#1 length = 521 sequences # 1

consensusID : consensus_4547#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 825
fasta sequence

                              [CGCGGTGAACGGTTGCTCGGTCAGCTGGCACCACTGCGTGCGATGGGTGACTTCCGCTACAAGTGGTCACGCGAGCAGCTCGAGCAGCTGGTCGTGCCACAGTTCGGGGAGCAGGTCATTGCACCGTACTACCTCACACCGCCCTATCTGAGCGCGTGCCCCGAGATTACGCATCACATCCTAACGCCGCGCGACAAGTTCCTGATCATCGCGAGCGACGGCCTGTGGGATACGATGAGCGCCATGCAGACGGTGCATCTGGTCGGGGAGCACATGTACGGGAAGGCGTTCCTGCAGCCGCTCACTCTCCCCAAGCAGGACATTACGCTCGGGGAGATCAGTCAAATGTTAACCACTCGAAAGGCGGGTCTGCAGAAGAAACCGCTCGATCGCAATGCGGCGACACATCTGATCCGCAACGCACTCGGCGGCACGGAGTACGGCGTGGAGCACTCAAAGCTGTCGCACATGCTGTCACTCCCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGACTCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAGTCGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAA--------ACACACACACTCAGAGACAGCTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCGCAAATTGTCCTACCGCTCAACTCAACAAAGCGTGCCCGTGTGTTCCTGGTAACGCGTTGTGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAGCAGAGAACGCACACACTCACATT]

[+] EMBL BX628298             [CGCGGTGAACGGTTGCTCGGTCAGCTGGCACCACTGCGTGCGATGGGTGACTTCCGCTACAAGTGGTCACGCGAGCAGCTCGAGCAGCTGGTCGTGCCACAGTTCGGGGAGCAGGTCATTGCACCGTACTACCTCACACCGCCCTATCTGAGCGCGTGCCCCGAGATTACGCATCACATCCTAACGCCGCGCGACAAGTTCCTGATCATCGCGAGCGACGGCCTGTGGGATACGATGAGCGCCATGCAGACGGTGCATCTGGTCGGGGAGCACATGTACGGGAAGGCGTTCCTGCAGCCGCTCACTCTCCCCAAGCAGGACATTACGCTCGGGGAGATCAGTCAAATGTTAACCACTCGAAAGGCGGGTCTGCAGAAGAAACCGCTCGATCGCAATGCGGCGACACATCTGATCCGCAACGCACTCGGCGGCACGGAGTACGGCGTGGAGCACTCAAAGCTGTCGCACATGCTGTCACTCCCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGACTCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAGTCGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAA        ACACACACACTCAGAGACAGCTCAATGTCGACAAAAT                                                                                                                                                    ]
[+] EMBL BX606223             [                                                                                                                                          CCGCCCTATCTGAGCGCGTGCCCCGAGATTACGCATCACATCCTAACGCCGCGCGACAAGTTCCTGATCATCGCGAGCGATGGCCTGTGGGATACGATGAGCGCCATGCAGACGGTGCATCTGGTCGGGGAGCACATGTACGGGAAGGCGTTCCTGCAGCCGCTCACTCTCCCCAAGCAGGACATTACGCTCGGGGAGATCAGTCAAATGTTAACCACTCGAAAGGCGGGTCTGCAGAAGAAACCGCTCGATCGCAATGCGGCGACACATCTGATCCGCAACGCACTCGGCGGCACGGAGTACGGCGTGGAGCACTCAAAGCTGTCGCACATGCTGTCACTCCCGAAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGACTCGGAATATCTCCGAAATTGTCCCACTTGATGGCGGGAGGGTGAAGGTCCCCCCCGTGAGACGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAAACACACACACACACACACTCAGAGACAGTTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCGCAAATTGTCCTACCGCTCAACTCAACAAAGCGTGCCCGTGTGTTCCTGGTAACGCGTTGTGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAGCAGAGAACGCACACACTCACATT]




>consensus_4547#0
CGCGGTGAACGGTTGCTCGGTCAGCTGGCACCACTGCGTGCGATGGGTGACTTCCGCTAC
AAGTGGTCACGCGAGCAGCTCGAGCAGCTGGTCGTGCCACAGTTCGGGGAGCAGGTCATT
GCACCGTACTACCTCACACCGCCCTATCTGAGCGCGTGCCCCGAGATTACGCATCACATC
CTAACGCCGCGCGACAAGTTCCTGATCATCGCGAGCGACGGCCTGTGGGATACGATGAGC
GCCATGCAGACGGTGCATCTGGTCGGGGAGCACATGTACGGGAAGGCGTTCCTGCAGCCG
CTCACTCTCCCCAAGCAGGACATTACGCTCGGGGAGATCAGTCAAATGTTAACCACTCGA
AAGGCGGGTCTGCAGAAGAAACCGCTCGATCGCAATGCGGCGACACATCTGATCCGCAAC
GCACTCGGCGGCACGGAGTACGGCGTGGAGCACTCAAAGCTGTCGCACATGCTGTCACTC
CCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGAC
TCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAG
TCGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAAACACACACACTCAGAGACAG
CTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCGCAAATTGTCCTACCGC
TCAACTCAACAAAGCGTGCCCGTGTGTTCCTGGTAACGCGTTGTGTGTCCTAATGAATCA
TTTTATCGCAACAGCGTTACAGCAGAGAACGCACACACTCACATT

consensusID : consensus_4547#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCATGCTGTCACTCCCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGACTCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAGACGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAAACACACACACACACACACACACACACTCAGAGACAGTTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCGCAAATATGTCCTACCGCTCAACTCAACAAGCGTGCCCGTGTGTTCCGGTAACGCGTTGTGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAACAGAGGACGCACACACTCACACTAGGTGCTTGTTTTTCTTTATTCCCTTGTATTTATGTTTCCGTTTATATGTTTTTTTAAAAAGGAATTTAAAAGGCCAATGAGTTGATCAACACGAAT]

[+] EMBL BM653827             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCATGCTGTCACTCCCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGACTCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAGACGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAAACACACACACACACACACACACACACTCAGAGACAGTTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCGCAAATATGTCCTACCGCTCAACTCAACAAGCGTGCCCGTGTGTTCCGGTAACGCGTTGTGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAACAGAGGACGCACACACTCACACTAGGTGCTTGTTTTTCTTTATTCCCTTGTATTTATGTTTCCGTTTATATGTTTTTTTAAAAAGGAATTTAAAAGGCCAATGAGTTGATCAACACGAAT]




>consensus_4547#1
CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCATGCTGTC
ACTCCCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTT
TGACTCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCG
TGAGACGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAAACACACACACACACAC
ACACACACACTCAGAGACAGTTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCC
CGCGCAAATATGTCCTACCGCTCAACTCAACAAGCGTGCCCGTGTGTTCCGGTAACGCGT
TGTGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAACAGAGGACGCACACACTCA
CACTAGGTGCTTGTTTTTCTTTATTCCCTTGTATTTATGTTTCCGTTTATATGTTTTTTT
AAAAAGGAATTTAAAAGGCCAATGAGTTGATCAACACGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4547#0      CGCGGTGAACGGTTGCTCGGTCAGCTGGCACCACTGCGTGCGATGGGTGACTTCCGCTAC 60
consensus_4547#1      ------------------------------------------------------------
                                                                                  

consensus_4547#0      AAGTGGTCACGCGAGCAGCTCGAGCAGCTGGTCGTGCCACAGTTCGGGGAGCAGGTCATT 120
consensus_4547#1      ------------------------------------------------------------
                                                                                  

consensus_4547#0      GCACCGTACTACCTCACACCGCCCTATCTGAGCGCGTGCCCCGAGATTACGCATCACATC 180
consensus_4547#1      ------------------------------------------------------------
                                                                                  

consensus_4547#0      CTAACGCCGCGCGACAAGTTCCTGATCATCGCGAGCGACGGCCTGTGGGATACGATGAGC 240
consensus_4547#1      ------------------------------------------------------------
                                                                                  

consensus_4547#0      GCCATGCAGACGGTGCATCTGGTCGGGGAGCACATGTACGGGAAGGCGTTCCTGCAGCCG 300
consensus_4547#1      ------------------------------------------------------------
                                                                                  

consensus_4547#0      CTCACTCTCCCCAAGCAGGACATTACGCTCGGGGAGATCAGTCAAATGTTAACCACTCGA 360
consensus_4547#1      ------------------------------------------------------------
                                                                                  

consensus_4547#0      AAGGCGGGTCTGCAGAAGAAACCGCTCGATCGCAATGCGGCGACACATCTGATCCGCAAC 420
consensus_4547#1      ----------------------------------------------------CCGCCCAC 8
                                                                           *  * **

consensus_4547#0      GCACTCGGCGGCACGGAGTACGGCGTGGAGCACTCAAAGCTGTCGCACATGCTGTCACTC 480
consensus_4547#1      GCGTCCGCCCACGC---GTCCGCCCACGCGTCCGCCCACGCGTC-CGCATGCTGTCACTC 64
                      **   ** *  * *   ** ** *   * *  * *  *   *** * *************

consensus_4547#0      CCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGAC 540
consensus_4547#1      CCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGAC 124
                      ************************************************************

consensus_4547#0      TCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAG 600
consensus_4547#1      TCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAG 184
                      ************************************************************

consensus_4547#0      TCGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAAACACACACAC---------- 650
consensus_4547#1      ACGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAAACACACACACACACACACAC 244
                       *************************************************          

consensus_4547#0      ------TCAGAGACAGCTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCG 704
consensus_4547#1      ACACACTCAGAGACAGTTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCG 304
                            ********** *******************************************

consensus_4547#0      CAAAT-TGTCCTACCGCTCAACTCAACAAAGCGTGCCCGTGTGTTCCTGGTAACGCGTTG 763
consensus_4547#1      CAAATATGTCCTACCGCTCAACTCAACAA-GCGTGCCCGTGTGTTCC-GGTAACGCGTTG 362
                      ***** *********************** ***************** ************

consensus_4547#0      TGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAGCAGAGAACGCACACACTCACA 823
consensus_4547#1      TGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAACAGAGGACGCACACACTCACA 422
                      ************************************** ***** ***************

consensus_4547#0      TT---------------------------------------------------------- 825
consensus_4547#1      CTAGGTGCTTGTTTTTCTTTATTCCCTTGTATTTATGTTTCCGTTTATATGTTTTTTTAA 482
                       *                                                          

consensus_4547#0      ---------------------------------------
consensus_4547#1      AAAGGAATTTAAAAGGCCAATGAGTTGATCAACACGAAT 521