cluster # 4549

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Anopheles gambiae
cluster # 4549 cluster # 4549 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4549#0 length = 695 sequences # 2

consensus_4549#1 length = 350 sequences # 1

consensusID : consensus_4549#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 695
fasta sequence

                              [TCAACGAACAGTTCTCGCTGTACCGGTGAAGGGAATCAACCAGCAGAGAGCGTACCATCAAAACACGTTACCAAAACACAATGGAACTAACATCACGCCTTCCAGTATCACCGAATCGAAGCGAAACGTGCAGGCGTGATAACACGGGAAGGAGAACCCTTTTTTTGTTCTTAATGCACGACAGTGCACAGATCTGTGAGTGAAACAGACGAGAAAAAGGGAGATACAGAGAGCGAGAGCGAAACTTGAGTAGGAATTAAGGTGGTTATTCAGCGCTATTTCCACAAGGTGTATTATTATCCTGATGACTACAGCAACAGCCCTCTGCGCTGTGCGGTCCCCCCTCCTCCTGCCATGTTTAGCCAATATATCGTAATGTTAGCGTTTAGTTTAGTCACAAACGTCACAGCGCCCCCAGAGCACCCCACAGCTGCCCTCCTCGCGCGCTGATGGGATTTCGCCTGTTTATGGGAGAATATGTAATCGACAATCTTCGAAAATCCACTTAGAGCCTTCCCCAAGTCGTGCAACATTTTGCGCTGACATTATTCGTTGAGTTTAGTGGCCTACTAGTAGAGTATATTGGAGCGCGTGTTACAGTGGTAGTGTTTGAGTTTAGCCTGTTAGCCGTGTTTTAGATGAGTATGTTGTACATATAAGCAGGAAGCAGCCAGAATAGGGAAGCGAGCAAAAAG]

[+] EMBL BX624997             [TCAACGAACAGTTCTCGCTGTACCGGTGAAGGGAATCAACCAGCAGAGAGCGTACCATCAAAACACGTTACCAAAACACAATGGAACTAACATCACGCCTTCCAGTATCACCGAATCGAAGCGAAACGTGCAGGCGTGATAACACGGGAAGGAGAACCCTTTTTTTGTTCTTAATGCACGACAGTGCACAGATCTGTGAGTGAAACAGACGAGAAAAAGGGAGATACAGAGAGCGAGAGCGAAACTTGAGTAGGAATTAAGGTGGTTATTCAGCGCTATTTCCACAAGGTGTATTATTATCCTGATGACTACAGCAACAGCCCTCTGCGCTGTGCGGTCCCCCCTCCTCCTGCCATGTTTAGCCAATATATCGTAATGTTAGCGTTTAGTTTAGTCACAAACGTCACAGCGCCCCCAGAGCACCCCACAGCTGCCCTCCTCGCGCGCTGATGGGATTTCGCCTGTTTATGGGAGAATATGTAATC                                                                                                                                                                                                                  ]
[+] EMBL BX627964             [                                                                                ATGGAACTAACATCACGCCTTCCAGTATCACCGAATCGAAGCGAAACGTGCAGGCGTGATAACACGGGAAGGAGAACCCTTTTTTTGTTCTTAATGCACGACAGTGCACAGATCTGTGAGTGAAACAGACGAGAAAAAGGGAGATACAGAGAGCGAGAGCGAAACTTGAGTAGGAATTAAGGTGGTTATTCAGCGCTATTTCCACAAGGTGTATTATTATCCTGATGACTACAGCAACAGCCCTCTGCGCTGTGCGGTCCCCCCTCCTCCTGCCATGTTTAGCCAATATATCGTAATGTTAGCGTTTAGTTTAGTCACAAACGTCACAGCGCCCCCAGAGCACCCCACAGCTGCCCTCCTCGCGCGCTGATGGGATTTCGCCTGTTTATGGGAGAATATGTAATCGACAATCTTCGAAAATCCACTTAGAGCCTTCCCCAAGTCGTGCAACATTTTGCGCTGACATTATTCGTTGAGTTTAGTGGCCTACTAGTAGAGTATATTGGAGCGCGTGTTACAGTGGTAGTGTTTGAGTTTAGCCTGTTAGCCGTGTTTTAGATGAGTATGTTGTACATATAAGCAGGAAGCAGCCAGAATAGGGAAGCGAGCAAAAAG]




>consensus_4549#0
TCAACGAACAGTTCTCGCTGTACCGGTGAAGGGAATCAACCAGCAGAGAGCGTACCATCA
AAACACGTTACCAAAACACAATGGAACTAACATCACGCCTTCCAGTATCACCGAATCGAA
GCGAAACGTGCAGGCGTGATAACACGGGAAGGAGAACCCTTTTTTTGTTCTTAATGCACG
ACAGTGCACAGATCTGTGAGTGAAACAGACGAGAAAAAGGGAGATACAGAGAGCGAGAGC
GAAACTTGAGTAGGAATTAAGGTGGTTATTCAGCGCTATTTCCACAAGGTGTATTATTAT
CCTGATGACTACAGCAACAGCCCTCTGCGCTGTGCGGTCCCCCCTCCTCCTGCCATGTTT
AGCCAATATATCGTAATGTTAGCGTTTAGTTTAGTCACAAACGTCACAGCGCCCCCAGAG
CACCCCACAGCTGCCCTCCTCGCGCGCTGATGGGATTTCGCCTGTTTATGGGAGAATATG
TAATCGACAATCTTCGAAAATCCACTTAGAGCCTTCCCCAAGTCGTGCAACATTTTGCGC
TGACATTATTCGTTGAGTTTAGTGGCCTACTAGTAGAGTATATTGGAGCGCGTGTTACAG
TGGTAGTGTTTGAGTTTAGCCTGTTAGCCGTGTTTTAGATGAGTATGTTGTACATATAAG
CAGGAAGCAGCCAGAATAGGGAAGCGAGCAAAAAG

consensusID : consensus_4549#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence

                              [AGCAAGAATGGCACGAGGTATGCAGAGAGCTCGCGTACATCAAAACACGTTACCAAAACACATTGGAACTAACATCACGCCTCCTAGTATCACCGAATCGAAGCGAGACGTGCAGGCGTGAGTAACACGGGAAGGAGAACCCTTTTTTTGTTCTTAATGCAGGACAGTGCACAGATCTGTGAGTGAAACAGACGAGAAAAAGGGCGATACAGAGAGCGAGAGCGAGACTTGAGTAGGAATTAAGGTGGTTATTCAGCGCTATTTCCACAAGGGTGTATTATNATCCTGAGTGACTACAGCGAAGCAGGCCCTCTGNCGCTGTGCGGTCCCGCGCCCTCCTCCTGCCATGG]

[+] EMBL BX469407             [AGCAAGAATGGCACGAGGTATGCAGAGAGCTCGCGTACATCAAAACACGTTACCAAAACACATTGGAACTAACATCACGCCTCCTAGTATCACCGAATCGAAGCGAGACGTGCAGGCGTGAGTAACACGGGAAGGAGAACCCTTTTTTTGTTCTTAATGCAGGACAGTGCACAGATCTGTGAGTGAAACAGACGAGAAAAAGGGCGATACAGAGAGCGAGAGCGAGACTTGAGTAGGAATTAAGGTGGTTATTCAGCGCTATTTCCACAAGGGTGTATTATNATCCTGAGTGACTACAGCGAAGCAGGCCCTCTGNCGCTGTGCGGTCCCGCGCCCTCCTCCTGCCATGG]




>consensus_4549#1
AGCAAGAATGGCACGAGGTATGCAGAGAGCTCGCGTACATCAAAACACGTTACCAAAACA
CATTGGAACTAACATCACGCCTCCTAGTATCACCGAATCGAAGCGAGACGTGCAGGCGTG
AGTAACACGGGAAGGAGAACCCTTTTTTTGTTCTTAATGCAGGACAGTGCACAGATCTGT
GAGTGAAACAGACGAGAAAAAGGGCGATACAGAGAGCGAGAGCGAGACTTGAGTAGGAAT
TAAGGTGGTTATTCAGCGCTATTTCCACAAGGGTGTATTATNATCCTGAGTGACTACAGC
GAAGCAGGCCCTCTGNCGCTGTGCGGTCCCGCGCCCTCCTCCTGCCATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4549#0      TCAACGAACAGTTCTCGCTGTACCGGTGAAGGGAATCAACCAGCAGAGAGCGTAC---CA 57
consensus_4549#1      ---------------------AGCAAGAATGGCACGAGGTATGCAGAGAGCTCGCGTACA 39
                                           * *    * ** *        *********   *   **

consensus_4549#0      TCAAAACACGTTACCAAAACACAATGGAACTAACATCACGCCTTCCAGTATCACCGAATC 117
consensus_4549#1      TCAAAACACGTTACCAAAACACATTGGAACTAACATCACGCCTCCTAGTATCACCGAATC 99
                      *********************** ******************* * **************

consensus_4549#0      GAAGCGAAACGTGCAGGCGTGA-TAACACGGGAAGGAGAACCCTTTTTTTGTTCTTAATG 176
consensus_4549#1      GAAGCGAGACGTGCAGGCGTGAGTAACACGGGAAGGAGAACCCTTTTTTTGTTCTTAATG 159
                      ******* ************** *************************************

consensus_4549#0      CACGACAGTGCACAGATCTGTGAGTGAAACAGACGAGAAAAAGGGAGATACAGAGAGCGA 236
consensus_4549#1      CAGGACAGTGCACAGATCTGTGAGTGAAACAGACGAGAAAAAGGGCGATACAGAGAGCGA 219
                      ** ****************************************** **************

consensus_4549#0      GAGCGAAACTTGAGTAGGAATTAAGGTGGTTATTCAGCGCTATTTCCACAAGG-TGTATT 295
consensus_4549#1      GAGCGAGACTTGAGTAGGAATTAAGGTGGTTATTCAGCGCTATTTCCACAAGGGTGTATT 279
                      ****** ********************************************** ******

consensus_4549#0      ATTATCCTGA-TGACTACAGCAACA---GCCCTCTGC-GCTGTGCGGTCCC---CCCTCC 347
consensus_4549#1      ATNATCCTGAGTGACTACAGCGAAGCAGGCCCTCTGNCGCTGTGCGGTCCCGCGCCCTCC 339
                      ** ******* ********** *     ********  *************   ******

consensus_4549#0      TCCTGCCATGTTTAGCCAATATATCGTAATGTTAGCGTTTAGTTTAGTCACAAACGTCAC 407
consensus_4549#1      TCCTGCCATGG------------------------------------------------- 350
                      **********                                                  

consensus_4549#0      AGCGCCCCCAGAGCACCCCACAGCTGCCCTCCTCGCGCGCTGATGGGATTTCGCCTGTTT 467
consensus_4549#1      ------------------------------------------------------------
                                                                                  

consensus_4549#0      ATGGGAGAATATGTAATCGACAATCTTCGAAAATCCACTTAGAGCCTTCCCCAAGTCGTG 527
consensus_4549#1      ------------------------------------------------------------
                                                                                  

consensus_4549#0      CAACATTTTGCGCTGACATTATTCGTTGAGTTTAGTGGCCTACTAGTAGAGTATATTGGA 587
consensus_4549#1      ------------------------------------------------------------
                                                                                  

consensus_4549#0      GCGCGTGTTACAGTGGTAGTGTTTGAGTTTAGCCTGTTAGCCGTGTTTTAGATGAGTATG 647
consensus_4549#1      ------------------------------------------------------------
                                                                                  

consensus_4549#0      TTGTACATATAAGCAGGAAGCAGCCAGAATAGGGAAGCGAGCAAAAAG 695
consensus_4549#1      ------------------------------------------------