cluster # 4560

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Anopheles gambiae
cluster # 4560 cluster # 4560 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4560#0 length = 928 sequences # 2

consensus_4560#1 length = 679 sequences # 1

consensusID : consensus_4560#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 928
fasta sequence

                              [GCAGAATCGCCACGAGGTNAGCACGAGGGAAAAGTGTCAACTGTAACTCGCTTCTTCTAATACAACAATGTCGCTAACGAATAGTGAAGATGCGCTGCTAGTGATCGAACTCGAGAATCTCAACACGGCAACGGACGATATTAATAAGCTCGAGATTGAACTAGAGGAAGCCAACTCCACCTTTCGGATACTGATGAACGAATCGACCCGCCGGTTAAAGCTGTCCTCGAAAAAGCTCGGCAGCTGCATCGAGAAGGCCCGCCCGTACTACGAAGCGCTCGAGAAGGCGAAGGTGGCCCAGCTGGAGTGCCAGGCGGCGACGCTCAAGTACCAGCGGGCGAACGAGATACACGCGGCGGCCAAGGAAACGGTCGCGCTGGCCGAGCAGCGGTTCATGAGCAAGCTCGCACGAATGGCAGTTCGAGCAATGCCTGGCAGGAAATGTTAAACCACGCTACTATTAAGGTGATGGACGCAGAGAAACAAAAGGCTGAAAGTGGTGCTGAACATCAGAAGAAGGCGAAGGTGTTCGAGGAGGCAGAAAAGAAAGTAAGTATAACGAGTCACGCGTGCTGCTAGAATGAAGCGCAAGGAGTCAATCGAGAGGTTTAATGTGTGTAGAACCACTTTAGTGACGCGGGTCAAGCACTAAATTTAATCCAAACAGAAACGTCACGTGCTTTTGCCATTTTTTTGGTGTTGTTGCGATTTAATCTAAACGTGTTTAGGCCATGTGTGTTTCCGCGTCTGAAAAGACAAAAAAGAAAACATATGTTGCACCATGCGCACGACGACCTCGTTAATCTTCGGACTTTTCCATCACCGGCTATCATTGCCGGGGTGAAACCAATTCGTCAAACGCGACCATACTGTAACGCTGTCCGATTTGCTTCACACGTTGTTGCACGTGAGCTGCTGCAAACGTGCT]

[+] EMBL BX468040             [GCAGAATCGCCACGAGGTNAGCACGAGGGAAAAGTGTCAACTGTAACTCGCTTCTTCTAATACAACAATGTCGCTAACGAATAGTGAAGATGCGCTGCTAGTGATCGAACTCGAGAATCTCAACACGGCAACGGACGATATTAATAAGCTCGAGATTGAACTAGAGGAAGCCAACTCCACCTTTCGGATACTGATGAACGAATCGACCCGCCGGTTAAAGCTGTCCTCGAAAAAGCTCGGCAGCTGCATCGAGAAGGCCCGCCCGTACTACGAAGCGCTCGAGAAGGCGAAGGTGGCCCAGCTGGAGTGCCAGGCGGCGACGCTCAAGTACCAGCGGGCGAACGAGATACACGCGGCGGCCAAGGAAACGGTCGCGCTGGCCGAGCAGCGGTTCATGAGCAAGCTCGCACGAATGGCAGTTCGAGCAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX625778             [                                                                                   GTGAAGATGCGCTGCTTGTGATCGAACTCGAGAATCTCAACACGGCAACGGACGATATTAATAAGCTCGAGATTGAACTAGAGGAAGCCAACTCCACCTTTCGGATACTGATGAACGAATCGACCCGCCGGTTAAAGCTGTCCTCGAAAAAGCTCGGCAGCTGCATCGAGAAGGCCCGCCCGTACTACGAAGCGCTCGAGAAGGCGAAGGTGGCCCAGCTGGAGTGCCAGGCGGCGACGCTCAAGTACCAGCGGGCGAACGAGATACACGCGGCGGCCAAGGAAACGGTCGCGCTGGCCGAGCAGCGGTTCATGAGCAA CTCGCACGAATGGCAGTTCGA CAATGCCTGGCAGGAAATGTTAAACCACGCTACTATTAAGGTGATGGACGCAGAGAAACAAAAGGCTGAAAGTGGTGCTGAACATCAGAAGAAGGCGAAGGTGTTCGAGGAGGCAGAAAAGAAAGTAAGTATAACGAGTCACGCGTGCTGCTAGAATGAAGCGCAAGGAGTCAATCGAGAGGTTTAATGTGTGTAGAACCACTTTAGTGACGCGGGTCAAGCACTAAATTTAATCCAAACAGAAACGTCACGTGCTTTTGCCATTTTTTTGGTGTTGTTGCGATTTAATCTAAACGTGTTTAGGCCATGTGTGTTTCCGCGTCTGAAAAGACAAAAAAGAAAACATATGTTGCACCATGCGCACGACGACCTCGTTAATCTTCGGACTTTTCCATCACCGGCTATCATTGCCGGGGTGAAACCAATTCGTCAAACGCGACCATACTGTAACGCTGTCCGATTTGCTTCACACGTTGTTGCACGTGAGCTGCTGCAAACGTGCT]




>consensus_4560#0
GCAGAATCGCCACGAGGTNAGCACGAGGGAAAAGTGTCAACTGTAACTCGCTTCTTCTAA
TACAACAATGTCGCTAACGAATAGTGAAGATGCGCTGCTAGTGATCGAACTCGAGAATCT
CAACACGGCAACGGACGATATTAATAAGCTCGAGATTGAACTAGAGGAAGCCAACTCCAC
CTTTCGGATACTGATGAACGAATCGACCCGCCGGTTAAAGCTGTCCTCGAAAAAGCTCGG
CAGCTGCATCGAGAAGGCCCGCCCGTACTACGAAGCGCTCGAGAAGGCGAAGGTGGCCCA
GCTGGAGTGCCAGGCGGCGACGCTCAAGTACCAGCGGGCGAACGAGATACACGCGGCGGC
CAAGGAAACGGTCGCGCTGGCCGAGCAGCGGTTCATGAGCAAGCTCGCACGAATGGCAGT
TCGAGCAATGCCTGGCAGGAAATGTTAAACCACGCTACTATTAAGGTGATGGACGCAGAG
AAACAAAAGGCTGAAAGTGGTGCTGAACATCAGAAGAAGGCGAAGGTGTTCGAGGAGGCA
GAAAAGAAAGTAAGTATAACGAGTCACGCGTGCTGCTAGAATGAAGCGCAAGGAGTCAAT
CGAGAGGTTTAATGTGTGTAGAACCACTTTAGTGACGCGGGTCAAGCACTAAATTTAATC
CAAACAGAAACGTCACGTGCTTTTGCCATTTTTTTGGTGTTGTTGCGATTTAATCTAAAC
GTGTTTAGGCCATGTGTGTTTCCGCGTCTGAAAAGACAAAAAAGAAAACATATGTTGCAC
CATGCGCACGACGACCTCGTTAATCTTCGGACTTTTCCATCACCGGCTATCATTGCCGGG
GTGAAACCAATTCGTCAAACGCGACCATACTGTAACGCTGTCCGATTTGCTTCACACGTT
GTTGCACGTGAGCTGCTGCAAACGTGCT

consensusID : consensus_4560#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 679
fasta sequence

                              [CCGGTTAAACCACGCTACTATTAAGGTGATGGACGCAGAGAAACAAAAGGCTGAAAGTGGTGCTGAACATCAGAAGAAGGCGAAGGTGTTCGAGGAGGCAGAAAAGAAAGTACAACAACTGGAGGAACGCTACCGAAGGAGCATACAGAAGTCGCGGCCCTACTTCGACGAGAAGCAGCTGTGCCAGGAGCAGCTGGAAGCGCAGAAGGGCCGCATCCAGCAGCTCGAGCAGCAGATCCAGGCGGCCAAGAGCGCCTACAGTACCGCGCTTCGCAATCTGGAAAAGATTAGCGAGGAGATACACGAGCAGCGAGGCGATCTTAGCCAGGCCGCACCGTCCGGCCCCCGGGAACCGGGCGTCGGGGCCGAGCTGGCTAACATTCTGCCCACGGCAAGCAGCACCACCGCCAGTAGCAACTCCAGCAACAACCTGCACAAGGTACCGGGCAAGGATCGGTTCCCGTACAGTAGCACCATGCCGGACATTTCGAGCGAGCTGGACAAGTGCGAAATCCGCTCAGTGGGCAGTGCGTCGGTGGCGACCAGCTCGGCCGTCAGCGAAAAGGATCCATCCGAGGAGGACGACTACTCCACCATGACGCTGCACGACGACGAGGACGATCTGCCGGCGGCAGTAGCAGCAGCGGCAGCATCATCCACCGTCGATCAGGATGACGAT]

[+] EMBL BM594405             [CCGGTTAAACCACGCTACTATTAAGGTGATGGACGCAGAGAAACAAAAGGCTGAAAGTGGTGCTGAACATCAGAAGAAGGCGAAGGTGTTCGAGGAGGCAGAAAAGAAAGTACAACAACTGGAGGAACGCTACCGAAGGAGCATACAGAAGTCGCGGCCCTACTTCGACGAGAAGCAGCTGTGCCAGGAGCAGCTGGAAGCGCAGAAGGGCCGCATCCAGCAGCTCGAGCAGCAGATCCAGGCGGCCAAGAGCGCCTACAGTACCGCGCTTCGCAATCTGGAAAAGATTAGCGAGGAGATACACGAGCAGCGAGGCGATCTTAGCCAGGCCGCACCGTCCGGCCCCCGGGAACCGGGCGTCGGGGCCGAGCTGGCTAACATTCTGCCCACGGCAAGCAGCACCACCGCCAGTAGCAACTCCAGCAACAACCTGCACAAGGTACCGGGCAAGGATCGGTTCCCGTACAGTAGCACCATGCCGGACATTTCGAGCGAGCTGGACAAGTGCGAAATCCGCTCAGTGGGCAGTGCGTCGGTGGCGACCAGCTCGGCCGTCAGCGAAAAGGATCCATCCGAGGAGGACGACTACTCCACCATGACGCTGCACGACGACGAGGACGATCTGCCGGCGGCAGTAGCAGCAGCGGCAGCATCATCCACCGTCGATCAGGATGACGAT]




>consensus_4560#1
CCGGTTAAACCACGCTACTATTAAGGTGATGGACGCAGAGAAACAAAAGGCTGAAAGTGG
TGCTGAACATCAGAAGAAGGCGAAGGTGTTCGAGGAGGCAGAAAAGAAAGTACAACAACT
GGAGGAACGCTACCGAAGGAGCATACAGAAGTCGCGGCCCTACTTCGACGAGAAGCAGCT
GTGCCAGGAGCAGCTGGAAGCGCAGAAGGGCCGCATCCAGCAGCTCGAGCAGCAGATCCA
GGCGGCCAAGAGCGCCTACAGTACCGCGCTTCGCAATCTGGAAAAGATTAGCGAGGAGAT
ACACGAGCAGCGAGGCGATCTTAGCCAGGCCGCACCGTCCGGCCCCCGGGAACCGGGCGT
CGGGGCCGAGCTGGCTAACATTCTGCCCACGGCAAGCAGCACCACCGCCAGTAGCAACTC
CAGCAACAACCTGCACAAGGTACCGGGCAAGGATCGGTTCCCGTACAGTAGCACCATGCC
GGACATTTCGAGCGAGCTGGACAAGTGCGAAATCCGCTCAGTGGGCAGTGCGTCGGTGGC
GACCAGCTCGGCCGTCAGCGAAAAGGATCCATCCGAGGAGGACGACTACTCCACCATGAC
GCTGCACGACGACGAGGACGATCTGCCGGCGGCAGTAGCAGCAGCGGCAGCATCATCCAC
CGTCGATCAGGATGACGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4560#0      GCAGAATCGCCACGAGGTNAGCACGAGGGAAAAGTGTCAACTGTAACTCGCTTCTTCTAA 60
consensus_4560#1      ------------------------------------CCGGTTAAACCACGCTACTATTAA 24
                                                           *   *  * * **** **  ***

consensus_4560#0      TACAACA-ATGTCGCTAACGAATAGTGAAGATGCGCTGCTAGTGATC----GAACTCGAG 115
consensus_4560#1      GGTGATGGACGCAGAGAAACAAAAGGCTGAAAGTGGTGCTGAACATCAGAAGAAGGCGAA 84
                          *   * *  *  **  ** **     * * * ****    ***    ***  *** 

consensus_4560#0      AAT-CTCAACACGGCAACGGACGATATTAATAAGCTCGAG-ATTGAACTAGAGGAAGCCA 173
consensus_4560#1      GGTGTTCGAGGAGGCAGAAAAGAAAGTACAACAACTGGAGGAACGCTACCGAAGGAGCAT 144
                        *  ** *   ****    *  *  *  *  * ** *** *  *     ** * ***  

consensus_4560#0      ACTCCACCTTTCGGATACTGATGAACGAATCGACCCGCCGGTTAAAGCTGTCCTCGAAAA 233
consensus_4560#1      ACAGAAG-TCGCGGCCCTACTTCGACGA---GAAGCAGCTGTGCCAGGAGCAGCTGGAAG 200
                      **   *  *  ***       *  ****   **  *  * **   **  *     * ** 

consensus_4560#0      AGCTCGGCAGCTGCATCGAGAAGGCCCGCCCGTACTACGAAGCGCTCGAGAAGGCGAAGG 293
consensus_4560#1      CGCAGAAGGGCCGCATCCAGCAGCTCGAGCAGCAGATCCAGGCGGCCAAGAGCGCCTACA 260
                       **      ** ***** ** **  *   * * *   * * ***  * ***  **  *  

consensus_4560#0      TGGCCCAGCTGGAGTGCCAGGCGGCGACGCTCAAGTACCAGCGGGCGAACGAGATACACG 353
consensus_4560#1      GTACCGCGCTT---CGCAATCTGGAAAAGATTA---GCGAGGAGATACACGAGCAG--CG 312
                         **  ***     ** *   **  * * * *    * **  *    *****     **

consensus_4560#0      CGGCGGCCAAGGAAACGGTCGCGCTGGCCGAGCAGCGGTTCATGAGCAAGCTCGCACGAA 413
consensus_4560#1      AGGCGATCTTAGCCA-GGCCGCACCGTCCGGCCCCCGGGAACCGGGCGTCGGGGCCGAGC 371
                       ****  *   *  * ** *** * * ***  *  ***     * **      **     

consensus_4560#0      TGGCAGTTCGAGCAATGCCTGGCAGGAAATGTTAAACCACGCTACTATTAAGGTGATGGA 473
consensus_4560#1      TGGCTAA-CATTCTGCCCACGGCAAGCAGCACCACCGCCAGTAGCAACTCCAGCAACAAC 430
                      ****    *   *    *  **** * *     *   *  *   * * *   *  *    

consensus_4560#0      CGCAGAGAAACAAAAGGCTGAAAGTGGTGCT-GAACATCAGAAGAAGGCGAAGGTGTTCG 532
consensus_4560#1      CTGCACAAGGTACCGGGCAAGGATCGGTTCCCGTACAGTAGCACCATGCCGGACATTTCG 490
                      *      *   *   ***    *  *** *  * ***  ** *  * **       ****

consensus_4560#0      AGGAGGCAGAAAAGAAAGTAAGTATAACGAGTCACGCGTGCTGCTAGAATGAAGCGCAAG 592
consensus_4560#1      AGCGAGCTGGACAAGTGCGAAATCCGCTCAGTGGGCAGTGCGTCGGTGGCGACCAGCTCG 550
                      **   ** * * *      ** *      ***     ****  *      **   **  *

consensus_4560#0      GA-GTCAATCGAGAGGTTTAATGTGTGTAGAACCACTTTAGTGACGCGGGTCAAGCACTA 651
consensus_4560#1      GCCGTCAGCGAAAAGGATCCATCCGAGGAGGACGACT------ACTCCACCATGACGCTG 604
                      *  ****    * *** *  **  * * ** ** ***      ** *        * ** 

consensus_4560#0      AATTTAATCCAAACAGAAACGTCACGTGCTTTTGCCATTTTTTTGGTGTTGTTGCGATTT 711
consensus_4560#1      CACGACGACGAGGACGATCTGCCGGCGGCAGTAGCAGCAGCGGCAGCATCATCCACCGTC 664
                       *      * *    **   * *    **  * **          *  *  *      * 

consensus_4560#0      AATCTAAACGTGTTTAGGCCATGTGTGTTTCCGCGTCTGAAAAGACAAAAAAGAAAACAT 771
consensus_4560#1      GATCAGGATGACGAT--------------------------------------------- 679
                       ***   * *    *                                             

consensus_4560#0      ATGTTGCACCATGCGCACGACGACCTCGTTAATCTTCGGACTTTTCCATCACCGGCTATC 831
consensus_4560#1      ------------------------------------------------------------
                                                                                  

consensus_4560#0      ATTGCCGGGGTGAAACCAATTCGTCAAACGCGACCATACTGTAACGCTGTCCGATTTGCT 891
consensus_4560#1      ------------------------------------------------------------
                                                                                  

consensus_4560#0      TCACACGTTGTTGCACGTGAGCTGCTGCAAACGTGCT 928
consensus_4560#1      -------------------------------------