cluster # 4580

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Anopheles gambiae
cluster # 4580 cluster # 4580 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4580#0 length = 742 sequences # 2

consensus_4580#1 length = 420 sequences # 1

consensusID : consensus_4580#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 742
fasta sequence

                              [CCGCAAGTATTCGCGATGTCAGTACGGCTGGGCTACTCGCACTCAGTTGTATATTTTGCGTTCTAAATAAACCAAGGGGTTTATCAATATACAAATCACGTATTTAAAGCAACGAGGTGACGGTGAATAATAGACATACATTGTGTGAGATTTTTTAGTACCACCTTGTGCAAATGTGTTTCTACAGGTAGAAGATCAACGTGATGATTCTAAAGCCAAATCCGACACGGCCTTATATAAGCAATAACCAAATCGACAAGCCGAGAAAGTGCTAAGGGTGTTGCGCGCATGCCTGAGGACTGACAATTATTGTGAAACATCATTGAATCGCGAATAGAGGAAACGAATTTGCAAAGTTATTAAGAGAAGAAATGAAGGAAGTATAAGTTTTGGTTTTGATTTGACTCTTAATAGTTGTTTTGGGATTGATACAAAAGTTGTTCAGCTCCAAGAAGTGAAGTAAAATGTCCAAAAAGTTACCCGTTCGCACACTGAGCGAACTGACGCTGGCTGAGTTGGCCGGTACGATTGTTGGCTCGATCGGAACCATGGTACAGACGAGCCTTGCGTTTGGTATTCCACCCGACTACACGCTGTTGGATGGTTGAGATCAACTCCTATATGGACAACATGGGAGCTACAAGCAACATCTACGAGGATCTGCTGCGCGTTATCCTTTGTTCCGACTCGCTTGACGCTTCGATGCGCTTCTGCTGCCTGCAGATGCTGCTGAACGAAGGCG]

[+] EMBL BM616035             [CCGCAAGTATTCGCGATGTCAGTACGGCTGGGCTACTCGCACTCAGTTGTATATTTTGCGTTCTAAATAAACCAAGGGGTTTATCAATATACAAATCACGTATTTAAAGCAACGAGGTGACGGTGAATAATAGACATACATTGTGTGAGATTTTTTAGTACCACCTTGTGCAAATGTGTTTCTACAGGTAGAAGATCAACGTGATGATTCTAAAGCCAAATCCGACACGGCCTTATATAAGCAATAACCAAATCGACAAGCCGAGAAAGTGCTAAGGGTGTTGCGCGCATGCCTGAGGACTGACAATTATTGTGAAACATCATTGAATCGCGAATAGAGGAAACGAATTTGCAAAGTTATTAAGAGAAGAAATGAAGGAAGTATAAGTTTTGGTTTTGATTTGACTCTTAATAGTTGTTTTGGGATTGATACAAAAGTTGTTCAGCTCCAAGAAGTGAAGTAAAATGTCCAAAAAGTTACCCGTTCGCACACTGAGCGAACTGACGCTGGCTGAGTTGGCCGGTACGATTGTTGGCTCGATCGGAACCATGGTACAGACGAGCCTTGCGTTTGGTATTCCACCCGACT                                                                                                                                                          ]
[+] EMBL BM633806             [                                ccgCTCGCACTCAGTTGTATATTTTGCGTTCTAAATAAACCAAGGGGTTTATCAATATACAAATCACGTATTTAAAGCAACGAGGTGACGGTGAATAATAGACATACATTGTGTGAGATTTTTTAGTACCACCTTGTGCAAATGTGTTTCTACAGGTAGAAGATCAACGTGATGATTCTAAAGCCAAATCCGACACGGCCTTATATAAGCAATAACCAAATCGACAAGCCGAGAAAGTGCTAAGGGTGTTGCGCGCATGCCTGAGGACTGACAATTATTGTGAAACATCATTGAATCGCGAATAGAGGAAACGAATTTGCAAAGTTATTAAGAGAAGAAATGAAGGAAGTATAAGTTTTGGTTTTGATTTGACTCTTAATAGTTGTTTTGGGATTGATACAAAAGTTGTTCAGCTCCAAGAAGTGAAGTAAAATGTCCAAAAAGTTACCCGTTCGCACACTGAGCGAACTGACGCTGGCTGAGTTGGCCGGTACGATTGTTGGCTCGATCGGAACCATGGTACAGACGAGCCTTGCGTTTGGTATTCCACCCGACTACACGCTGTTGGATGGTTGAGATCAACTCCTATATGGACAACATGGGAGCTACAAGCAACATCTACGAGGATCTGCTGCGCGTTATCCTTTGTTCCGACTCGCTTGACGCTTCGATGCGCTTCTGCTGCCTGCAGATGCTGCTGAACGAAGGCG]




>consensus_4580#0
CCGCAAGTATTCGCGATGTCAGTACGGCTGGGCTACTCGCACTCAGTTGTATATTTTGCG
TTCTAAATAAACCAAGGGGTTTATCAATATACAAATCACGTATTTAAAGCAACGAGGTGA
CGGTGAATAATAGACATACATTGTGTGAGATTTTTTAGTACCACCTTGTGCAAATGTGTT
TCTACAGGTAGAAGATCAACGTGATGATTCTAAAGCCAAATCCGACACGGCCTTATATAA
GCAATAACCAAATCGACAAGCCGAGAAAGTGCTAAGGGTGTTGCGCGCATGCCTGAGGAC
TGACAATTATTGTGAAACATCATTGAATCGCGAATAGAGGAAACGAATTTGCAAAGTTAT
TAAGAGAAGAAATGAAGGAAGTATAAGTTTTGGTTTTGATTTGACTCTTAATAGTTGTTT
TGGGATTGATACAAAAGTTGTTCAGCTCCAAGAAGTGAAGTAAAATGTCCAAAAAGTTAC
CCGTTCGCACACTGAGCGAACTGACGCTGGCTGAGTTGGCCGGTACGATTGTTGGCTCGA
TCGGAACCATGGTACAGACGAGCCTTGCGTTTGGTATTCCACCCGACTACACGCTGTTGG
ATGGTTGAGATCAACTCCTATATGGACAACATGGGAGCTACAAGCAACATCTACGAGGAT
CTGCTGCGCGTTATCCTTTGTTCCGACTCGCTTGACGCTTCGATGCGCTTCTGCTGCCTG
CAGATGCTGCTGAACGAAGGCG

consensusID : consensus_4580#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [GAATCGCCCGAGGTGACTCTTAATAGTTGTTTTGAGATTGATACAAAAGTTGTTCAGCTCCNAGAAGTGAAGTAAAATGTCCAACAAAGTTACCCGTTCGCACACTGACGTGAACTGACGCTGGTCAGAGTTGCCGGTACGATCGTTGGCTCGATCGGACACCATGGATACAGACGAGCCTTGCGTTTGGTATTCCACCCGACTACACGCTGTTGATGGTTGAGATCAACTCCTATATGGACCAACATGGGAGCTACAAGCAACATCTACGANGATCTGCTGCGCGCTTATCCTATTGTTACCGACATCGCTTGACGCTTCGATGCGCTTCTGCTGCCTGCAGATGCTGCTGAACGAAGGCGTACAGTGTCTGGTAACGGATATCTTCCCCCTANCCTACTACGAGCGCATACTGCAGGT]

[+] EMBL AL932915             [GAATCGCCCGAGGTGACTCTTAATAGTTGTTTTGAGATTGATACAAAAGTTGTTCAGCTCCNAGAAGTGAAGTAAAATGTCCAACAAAGTTACCCGTTCGCACACTGACGTGAACTGACGCTGGTCAGAGTTGCCGGTACGATCGTTGGCTCGATCGGACACCATGGATACAGACGAGCCTTGCGTTTGGTATTCCACCCGACTACACGCTGTTGATGGTTGAGATCAACTCCTATATGGACCAACATGGGAGCTACAAGCAACATCTACGANGATCTGCTGCGCGCTTATCCTATTGTTACCGACATCGCTTGACGCTTCGATGCGCTTCTGCTGCCTGCAGATGCTGCTGAACGAAGGCGTACAGTGTCTGGTAACGGATATCTTCCCCCTANCCTACTACGAGCGCATACTGCAGGT]




>consensus_4580#1
GAATCGCCCGAGGTGACTCTTAATAGTTGTTTTGAGATTGATACAAAAGTTGTTCAGCTC
CNAGAAGTGAAGTAAAATGTCCAACAAAGTTACCCGTTCGCACACTGACGTGAACTGACG
CTGGTCAGAGTTGCCGGTACGATCGTTGGCTCGATCGGACACCATGGATACAGACGAGCC
TTGCGTTTGGTATTCCACCCGACTACACGCTGTTGATGGTTGAGATCAACTCCTATATGG
ACCAACATGGGAGCTACAAGCAACATCTACGANGATCTGCTGCGCGCTTATCCTATTGTT
ACCGACATCGCTTGACGCTTCGATGCGCTTCTGCTGCCTGCAGATGCTGCTGAACGAAGG
CGTACAGTGTCTGGTAACGGATATCTTCCCCCTANCCTACTACGAGCGCATACTGCAGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4580#0      CCGCAAGTATTCGCGATGTCAGTACGGCTGGGCTACTCGCACTCAGTTGTATATTTTGCG 60
consensus_4580#1      ------------------------------------------------------------
                                                                                  

consensus_4580#0      TTCTAAATAAACCAAGGGGTTTATCAATATACAAATCACGTATTTAAAGCAACGAGGTGA 120
consensus_4580#1      ------------------------------------------------------------
                                                                                  

consensus_4580#0      CGGTGAATAATAGACATACATTGTGTGAGATTTTTTAGTACCACCTTGTGCAAATGTGTT 180
consensus_4580#1      ------------------------------------------------------------
                                                                                  

consensus_4580#0      TCTACAGGTAGAAGATCAACGTGATGATTCTAAAGCCAAATCCGACACGGCCTTATATAA 240
consensus_4580#1      ------------------------------------------------------------
                                                                                  

consensus_4580#0      GCAATAACCAAATCGACAAGCCGAGAAAGTGCTAAGGGTGTTGCGCGCATGCCTGAGGAC 300
consensus_4580#1      ------------------------------------------------------------
                                                                                  

consensus_4580#0      TGACAATTATTGTGAAACATCATTGAATCGCGAATAGAGGAAACGAATTTGCAAAGTTAT 360
consensus_4580#1      ------------------------------------------------------------
                                                                                  

consensus_4580#0      TAAGAGAAGAAATGAAGGAAGTATAAGTTTTGGTTTTGATTTGACTCTTAATAGTTGTTT 420
consensus_4580#1      --------------------------GAATCG--CCCGAGGTGACTCTTAATAGTTGTTT 32
                                                *  * *     **  *******************

consensus_4580#0      TGGGATTGATACAAAAGTTGTTCAGCTCCAAGAAGTGAAGTAAAATGTCCAA-AAAGTTA 479
consensus_4580#1      TGAGATTGATACAAAAGTTGTTCAGCTCCNAGAAGTGAAGTAAAATGTCCAACAAAGTTA 92
                      ** ************************** ********************** *******

consensus_4580#0      CCCGTTCGCACACTGA-GCGAACTGACGCTGGCTGAGTTGGCCGGTACGATTGTTGGCTC 538
consensus_4580#1      CCCGTTCGCACACTGACGTGAACTGACGCTGGTCAGAGTTGCCGGTACGATCGTTGGCTC 152
                      **************** * *************      * *********** ********

consensus_4580#0      GATCGGA-ACCATGG-TACAGACGAGCCTTGCGTTTGGTATTCCACCCGACTACACGCTG 596
consensus_4580#1      GATCGGACACCATGGATACAGACGAGCCTTGCGTTTGGTATTCCACCCGACTACACGCTG 212
                      ******* ******* ********************************************

consensus_4580#0      TTGGATGGTTGAGATCAACTCCTATATGGAC-AACATGGGAGCTACAAGCAACATCTACG 655
consensus_4580#1      TTG-ATGGTTGAGATCAACTCCTATATGGACCAACATGGGAGCTACAAGCAACATCTACG 271
                      *** *************************** ****************************

consensus_4580#0      AGGATCTGCTGCGCG-TTATCCT-TTGTT-CCGAC-TCGCTTGACGCTTCGATGCGCTTC 711
consensus_4580#1      ANGATCTGCTGCGCGCTTATCCTATTGTTACCGACATCGCTTGACGCTTCGATGCGCTTC 331
                      * ************* ******* ***** ***** ************************

consensus_4580#0      TGCTGCCTGCAGATGCTGCTGAACGAAGGCG----------------------------- 742
consensus_4580#1      TGCTGCCTGCAGATGCTGCTGAACGAAGGCGTACAGTGTCTGGTAACGGATATCTTCCCC 391
                      *******************************                             

consensus_4580#0      -----------------------------
consensus_4580#1      CTANCCTACTACGAGCGCATACTGCAGGT 420