cluster # 4581

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Anopheles gambiae
cluster # 4581 cluster # 4581 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4581#0 length = 940 sequences # 2

consensus_4581#1 length = 147 sequences # 1

consensusID : consensus_4581#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 940
fasta sequence

                              [ATGTTGAGGCTATGGGGAGAAAAAGAACCAATTCAAATGTAAGAAATGCACCACTACTACTCAAAAACTGCTTCACGGACCGTTATTGTCGTCGTGGTGATCGGTAGTGATCTTGAGCTACGATCCATCGCTGAGGAAATGGTAACAAACGGAAAGGAAGCTCTATAGAGACTGTAAGCATCATCATTACACATCCTACATACAATACCCACACACATACACCATTGAAGAGGCATACGGAAAGCGAACGAACATTATTCAAAGTATTGGAAACACACACGGGATTAACTCCTATATAGGGGGGTACATCCTTTGAATGTACAGGAAGTAATGTGTTAACGAAACTCATCTCTCTAATCAAATATCTTAGTGCAATGCTTTCATTGCCCGCCAGCAGCAGCATTATACTAGAATAGGAAGGACGCGTTTTACAGTTTTGGTTGTTTTTCTCTTGCTCACATGCCGCAGTTGGTATGAAAATTGCTTACACTCGACCCGCAGGCTCATGTGTAGGAGCAGCTGTTTCTTGCTAACGATATTGTGGTTCGACGTCTAATTCCTCCGACCCGGAAAACACAAGAGCGTGGGGATGCGCGTTCAATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAAGTTTTAAACGCAACTAT---ACAGACAGAACACATACATATATAAAATCAGAAACCAGCGACCAGAACCCGGACCGATTCCCCGGTATACAAAGTATGCGAGCATGGGAACGGCCCTATCCACCAGGGATAGAAGAACGGAAATACAATTATCGATATAGTTTATGTAAAAGCTTTGCCTTATAAAACGTAAGTGGAAACAAACAAAAAAAACCGTGGTGCGAAACCAAAAGATTCTCTATATATACAGATATATACAAGGATATTAATTATACAAAATATTAACTTCTGCGA]

[+] EMBL BX615603             [ATGTTGAGGCTATGGGGAGAAAAAGAACCAATTCAAATGTAAGAAATGCACCACTACTACTCAAAAACTGCTTCACGGACCGTTATTGTCGTCGTGGTGATCGGTAGTGATCTTGAGCTACGATCCATCGCTGAGGAAATGGTAACAAACGGAAAGGAAGCTCTATAGAGACTGTAAGCATCATCATTACACATCCTACATACAATACCCACACACATACACCATTGAAGAGGCATACGGAAAGCGAACGAACATTATTCAAAGTATTGGAAACACACACGGGATTAACTCCTATATAGGGGGGTACATCCTTTGAATGTACAGGAAGTAATGTGTTAACGAAACTCATCTCTCTAATCAAATATCTTAGTGCAATGCTTTCATTGCCCGCCAGCAGCAGCATTATACTAGAATAGGAAGGACGCGTTTTACAGTTTTGGTTGTTTTTCTCTTGCTCACATGCCGCAGTTGGTATGAAAATTGCTTACACTCGACCCGCAGGCTCATGTGTAGGAGCAGCTGTTTCTTGCTAACGATATTGTGGTTCGACGTCTAATTCCTCCGACCCGGAAAACACAAGAGCGTGGGGATGCGCGTTCAATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAAGTTTTAAACGCAACTAT   ACAGACAGAACACATACATATATAAAATCAGAAACCAGCGACCAGAACCCGGACCGATTCCCCGGTATACAAA                                                                                                                                                                                                        ]
[+] EMBL BX608888             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GAGCAGCTGTTTCTTGCTAACGATATTGTGGTTTGACGTCTAATTCCTCCGACCCGGCAAACACAAGAGCGTGGGGATGCGCGTTCAATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAACTTTTAAACGCAAATATACCACAAACAAAACACATACATATATAAAATCAGAAACCAGCGACCAGGACCCGGACCGGTTCCCCGGTACACAGAGTATGCGAGCATGGGAACGGCCCTATCCACCAGGGATAGAAGAACGGAAATACAATTATCGATATAGTTTATGTAAAAGCTTTGCCTTATAAAACGTAAGTGGAAACAAACAAAAAAAACCGTGGTGCGAAACCAAAAGATTCTCTATATATACAGATATATACAAGGATATTAATTATACAAAATATTAACTTCTGCGA]




>consensus_4581#0
ATGTTGAGGCTATGGGGAGAAAAAGAACCAATTCAAATGTAAGAAATGCACCACTACTAC
TCAAAAACTGCTTCACGGACCGTTATTGTCGTCGTGGTGATCGGTAGTGATCTTGAGCTA
CGATCCATCGCTGAGGAAATGGTAACAAACGGAAAGGAAGCTCTATAGAGACTGTAAGCA
TCATCATTACACATCCTACATACAATACCCACACACATACACCATTGAAGAGGCATACGG
AAAGCGAACGAACATTATTCAAAGTATTGGAAACACACACGGGATTAACTCCTATATAGG
GGGGTACATCCTTTGAATGTACAGGAAGTAATGTGTTAACGAAACTCATCTCTCTAATCA
AATATCTTAGTGCAATGCTTTCATTGCCCGCCAGCAGCAGCATTATACTAGAATAGGAAG
GACGCGTTTTACAGTTTTGGTTGTTTTTCTCTTGCTCACATGCCGCAGTTGGTATGAAAA
TTGCTTACACTCGACCCGCAGGCTCATGTGTAGGAGCAGCTGTTTCTTGCTAACGATATT
GTGGTTCGACGTCTAATTCCTCCGACCCGGAAAACACAAGAGCGTGGGGATGCGCGTTCA
ATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAAGTTTTAAACG
CAACTATACAGACAGAACACATACATATATAAAATCAGAAACCAGCGACCAGAACCCGGA
CCGATTCCCCGGTATACAAAGTATGCGAGCATGGGAACGGCCCTATCCACCAGGGATAGA
AGAACGGAAATACAATTATCGATATAGTTTATGTAAAAGCTTTGCCTTATAAAACGTAAG
TGGAAACAAACAAAAAAAACCGTGGTGCGAAACCAAAAGATTCTCTATATATACAGATAT
ATACAAGGATATTAATTATACAAAATATTAACTTCTGCGA

consensusID : consensus_4581#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 147
fasta sequence

                              [CTACATACAATACCCACACACATACACCATTGCAAGAGGCATACGGAAAGCGAACGAACATTATTCAAAGGGGGGGTGGGTACATCCTTTGAATGTACAGGAAGTAATGAGTTAACGAAACTCATCTCTCTAATCAAATATCTTAGT]

[+] EMBL BX610495             [CTACATACAATACCCACACACATACACCATTGCAAGAGGCATACGGAAAGCGAACGAACATTATTCAAAGGGGGGGTGGGTACATCCTTTGAATGTACAGGAAGTAATGAGTTAACGAAACTCATCTCTCTAATCAAATATCTTAGT]




>consensus_4581#1
CTACATACAATACCCACACACATACACCATTGCAAGAGGCATACGGAAAGCGAACGAACA
TTATTCAAAGGGGGGGTGGGTACATCCTTTGAATGTACAGGAAGTAATGAGTTAACGAAA
CTCATCTCTCTAATCAAATATCTTAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4581#0      ATGTTGAGGCTATGGGGAGAAAAAGAACCAATTCAAATGTAAGAAATGCACCACTACTAC 60
consensus_4581#1      ------------------------------------------------------------
                                                                                  

consensus_4581#0      TCAAAAACTGCTTCACGGACCGTTATTGTCGTCGTGGTGATCGGTAGTGATCTTGAGCTA 120
consensus_4581#1      ------------------------------------------------------------
                                                                                  

consensus_4581#0      CGATCCATCGCTGAGGAAATGGTAACAAACGGAAAGGAAGCTCTATAGAGACTGTAAGCA 180
consensus_4581#1      ------------------------------------------------------------
                                                                                  

consensus_4581#0      TCATCATTACACATCCTACATACAATACCCACACACATACACCATTG-AAGAGGCATACG 239
consensus_4581#1      ---------------CTACATACAATACCCACACACATACACCATTGCAAGAGGCATACG 45
                                     ******************************** ************

consensus_4581#0      GAAAGCGAACGAACATTATTCAAAGTATTGGAAACACACACGGGATTAACTCCTATATAG 299
consensus_4581#1      GAAAGCGAACGAACATTATTCAAAG----------------GGGG--------------G 75
                      *************************                ***               *

consensus_4581#0      GGGGGTACATCCTTTGAATGTACAGGAAGTAATGTGTTAACGAAACTCATCTCTCTAATC 359
consensus_4581#1      GTGGGTACATCCTTTGAATGTACAGGAAGTAATGAGTTAACGAAACTCATCTCTCTAATC 135
                      * ******************************** *************************

consensus_4581#0      AAATATCTTAGTGCAATGCTTTCATTGCCCGCCAGCAGCAGCATTATACTAGAATAGGAA 419
consensus_4581#1      AAATATCTTAGT------------------------------------------------ 147
                      ************                                                

consensus_4581#0      GGACGCGTTTTACAGTTTTGGTTGTTTTTCTCTTGCTCACATGCCGCAGTTGGTATGAAA 479
consensus_4581#1      ------------------------------------------------------------
                                                                                  

consensus_4581#0      ATTGCTTACACTCGACCCGCAGGCTCATGTGTAGGAGCAGCTGTTTCTTGCTAACGATAT 539
consensus_4581#1      ------------------------------------------------------------
                                                                                  

consensus_4581#0      TGTGGTTCGACGTCTAATTCCTCCGACCCGGAAAACACAAGAGCGTGGGGATGCGCGTTC 599
consensus_4581#1      ------------------------------------------------------------
                                                                                  

consensus_4581#0      AATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAAGTTTTAAAC 659
consensus_4581#1      ------------------------------------------------------------
                                                                                  

consensus_4581#0      GCAACTATACAGACAGAACACATACATATATAAAATCAGAAACCAGCGACCAGAACCCGG 719
consensus_4581#1      ------------------------------------------------------------
                                                                                  

consensus_4581#0      ACCGATTCCCCGGTATACAAAGTATGCGAGCATGGGAACGGCCCTATCCACCAGGGATAG 779
consensus_4581#1      ------------------------------------------------------------
                                                                                  

consensus_4581#0      AAGAACGGAAATACAATTATCGATATAGTTTATGTAAAAGCTTTGCCTTATAAAACGTAA 839
consensus_4581#1      ------------------------------------------------------------
                                                                                  

consensus_4581#0      GTGGAAACAAACAAAAAAAACCGTGGTGCGAAACCAAAAGATTCTCTATATATACAGATA 899
consensus_4581#1      ------------------------------------------------------------
                                                                                  

consensus_4581#0      TATACAAGGATATTAATTATACAAAATATTAACTTCTGCGA 940
consensus_4581#1      -----------------------------------------