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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_459#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence
[CCGCGGTACTTTGCGGCAATTCTCGCCGGGAGTTGGGTGCGGAGTGCGGGCAGCGTGATCGCCCTGCCCGGCTACTCGTACGCGGCAGTGCACTTTGCGCTCTGCCACATCTACTCCGGTGCCTCCCATCCGCCGGAGGGCATCAGCCTGATGGAACTGGCCGCACTGTCCGATCTGCTCGGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCTGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGGCTGCAAAAGCTAC]
[+] EMBL BM575070 [CCGCGGTACTTTGCGGCAATTCTCGCCGGGAGTTGGGTGCGGAGTGCGGGCAGCGTGATCGCCCTGCCCGGCTACTCGTACGCGGCAGTGCACTTTGCGCTCTGCCACATCTACTCCGGTGCCTCCCATCCGCCGGAGGGCATCAGCCTGATGGAACTGGCCGCACTGTCCGATCTGCTCGGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCTGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGGCTGCAAAAGCTAC]
consensusID : consensus_459#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGGGCCGCCCTGTCCGATCTGCTCGGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCGGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGCCTGCAAAAGCTACCCGCGGGCAACGAGGCTGCAGAAGCTGCTGCAGGCCAAAGTGCTAACCATGACGACGACCACCTCGTCGACGCCCATGTCGTCGAGCGACAACACGAACGTGGTGAACGTGTACGACAAGCAAGC]
[+] EMBL BM648160 [CCGCGGACGCGTGGGCGGACGCGTGGGGGCCGCCCTGTCCGATCTGCTCGGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCGGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGCCTGCAAAAGCTACCCGCGGGCAACGAGGCTGCAGAAGCTGCTGCAGGCCAAAGTGCTAACCATGACGACGACCACCTCGTCGACGCCCATGTCGTCGAGCGACAACACGAACGTGGTGAACGTGTACGACAAGCAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_459#0 CCGCGGTACTTTGCGGCAATTCTCGCCGGGAGTTGGGTGCGGAGTGCGGGCAGCGTGATC 60
consensus_459#1 ------------------------------------------------------------
consensus_459#0 GCCCTGCCCGGCTACTCGTACGCGGCAGTGCACTTTGCGCTCTGCCACATCTACTCCGGT 120
consensus_459#1 ------------------------------------------------------------
consensus_459#0 GCCTCCCATCCGCCGGAGGGCATCAGCCTGATGGAACTGGCCGCACTGTCCGATCTGCTC 180
consensus_459#1 ---------CCGC--GGACGCGTGGGCGGACGCGTGGGGGCCGCCCTGTCCGATCTGCTC 49
**** * ** * ** * ****** ***************
consensus_459#0 GGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAAC 240
consensus_459#1 GGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAAC 109
************************************************************
consensus_459#0 TTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTA 300
consensus_459#1 TTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTA 169
************************************************************
consensus_459#0 AACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTG 360
consensus_459#1 AACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTG 229
************************************************************
consensus_459#0 AAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGG 420
consensus_459#1 AAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGG 289
************************************************************
consensus_459#0 CAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAG 480
consensus_459#1 CAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAG 349
************************************************************
consensus_459#0 CAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCTGTGGAGGTGGAAAACGTGGTGCGC 540
consensus_459#1 CAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCGGTGGAGGTGGAAAACGTGGTGCGC 409
*********************************** ************************
consensus_459#0 GACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGC 600
consensus_459#1 GACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGC 469
************************************************************
consensus_459#0 GACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTC 660
consensus_459#1 GACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTC 529
************************************************************
consensus_459#0 CTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGGCTGCAAAAGCTAC--------- 711
consensus_459#1 CTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGCCTGCAAAAGCTACCCGCGGGCA 589
************************************* *************
consensus_459#0 ------------------------------------------------------------
consensus_459#1 ACGAGGCTGCAGAAGCTGCTGCAGGCCAAAGTGCTAACCATGACGACGACCACCTCGTCG 649
consensus_459#0 --------------------------------------------------------
consensus_459#1 ACGCCCATGTCGTCGAGCGACAACACGAACGTGGTGAACGTGTACGACAAGCAAGC 705
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||