cluster # 4600

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Anopheles gambiae
cluster # 4600 cluster # 4600 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4600#0 length = 710 sequences # 2

consensus_4600#1 length = 449 sequences # 1

consensusID : consensus_4600#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 710
fasta sequence

                              [GTGGCAGCAGGTGGCGATGGCTAGTGGTTGTGGGTGACACATCGTAGTTCCTTCATTTCAATTTCATTCCTTCTCGAGCTCTGTGCGTTGGAAAAAGAAGGGGATTTTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGACACACTCAAGAGCCTCAGCCTTCCTACCCCCCCGTACCCGTACACCCGAAAGCAGTTCATGGGGGATTATTCAGCAGCAGCAGCAGCACCACCGAGAACCGTTTGCTCCACTGTTGCTAATTGTTTCGGCCACCTTCTGGGTTCTACTGTAGGCGCCCCCCGCCAGCTATAATGGTGTGTTACATTTGTCGCTTAGTCGCTTGAACGTCTTGTCAAACAAAACGCCCGAAAGAAGTTACAACTTTTCCCAAAAAAGAACAAAAACAAACGGCCCCAATATATCCCCCCTACAAGTTGCCACACTTGAAAGACACAAACTCCGAACACGGTGTGCAAGCAAATAGAGCACATACCAATAGCGCATTACTTTAGCATTCCTGATGGTGGGCCCTCTTCTGTACATGATCGAGAGAAAGGGATGGGAANGGAAGGTGGGGGCAATCTGTTTAGGGTAGATGGGTATGTTTTACACATAGAAACGCTTAGAACAGAACAGAATGGNCCTCCTGTTTGGCACGAAAAACACACAAAATTCGACNATGGGAAGTTAGTGAGAGTTA]

[+] EMBL BX620993             [GTGGCAGCAGGTGGCGATGGCTAGTGGTTGTGGGTGACACATCGTAGTTCCTTCATTTCAATTTCATTCCTTCTCGAGCTCTGTGCGTTGGAAAAAGAAGGGGATTTTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGACACACTCAAGAGCCTCAGCCTTCCTACCCCCCCGTACCCGTACACCCGAAAGCAGTTCATGGGGGATTATTCAGCAGCAGCAGCAGCACCACCGAGAACCGTTTGCTCCACTGTTGCTAATTGTTTCGGCCACCTTCTGGGTTCTACTGTAGGCGCCCCCCGCCAGCTATAATGGTGTGTTACATTTGTCGCTTAGTCGCTTGAACGTCTTGTCAAACAAAACGCCCGAAAGAAGTTACAACTTTTCCCAAAAAAGAACAAAAACAAACGGCCCCAATATATCCCCCCTACAAGTTGCCACACTTGAAAGACACAAACTCCGAACACGGTGTGCAAGCAAATAGAGCACATACCAATAGCGCATTACTTTAGCATTCCTGATGGTGGGCCCTCTTCTGTACATGATCGAGAGAAAGGGATGGGAANGGAAGGTGGGGGCAATCTGTTTAGGGTAGATGGGTATGTTTTACACATAGAAACGCTTAGAACAGAACAGAATGGNCCTCCTGTTTGGCACGAAAAACACACAAAATTCGACNATGGGAAGTTAGTGAGAGTTA]
[+] EMBL BM583326             [              ccgTGGCTAGTGGTTGTGGGTGACACATCGTAGTTCCTTCATTTCAATTTCATTCCTTCTCGAGCTCTGTGCGTTGGAAAAAGAAGGGGATTTTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGACACACTCAAGAGCCTCAGCCTTCCTACCCCCCCGTACCCGTACACCCGAAAGCAGTTCATGGGGGATTATTCAGCAGCAGCAGCAGCACCACCGAGAACCGTTTGCTCCACTGTTGCTAATTGTTTCGGCCACCTTCTGGGTTCTACTGTAGGCGCCCCCCGCCAGCTATAATGGTGTGTTACATTTGTCGCTTAGTCGCTTGAACGTCTTGTCAAACAAAACGCCCGAAAGAAGTTACAACTTTTCCCAAAAAAGAACAAAAACAAACGGCCCCAATATATCCCCCCTACAAGTTGCCACACTTGAAAGACACAAACTCCGAACACGGTGTGCAAGCAAATAGAGCACATACCAATAGCGCATTACTTTAGCATTCCTGATGGTGGGCCCTCTTCTGTACATGATCGAGAGAAAGGGATGGGAAGGGAAGGTGGGGGCAATCTGTTTAGGGTAGATGGTTATGTTTTACACATAGAAACGCTTAGAACAGAACA                                                                 ]




>consensus_4600#0
GTGGCAGCAGGTGGCGATGGCTAGTGGTTGTGGGTGACACATCGTAGTTCCTTCATTTCA
ATTTCATTCCTTCTCGAGCTCTGTGCGTTGGAAAAAGAAGGGGATTTTAGAGGGTGGAGC
AACAAATTCCAAATGGCAATACAGGCGCGACACACTCAAGAGCCTCAGCCTTCCTACCCC
CCCGTACCCGTACACCCGAAAGCAGTTCATGGGGGATTATTCAGCAGCAGCAGCAGCACC
ACCGAGAACCGTTTGCTCCACTGTTGCTAATTGTTTCGGCCACCTTCTGGGTTCTACTGT
AGGCGCCCCCCGCCAGCTATAATGGTGTGTTACATTTGTCGCTTAGTCGCTTGAACGTCT
TGTCAAACAAAACGCCCGAAAGAAGTTACAACTTTTCCCAAAAAAGAACAAAAACAAACG
GCCCCAATATATCCCCCCTACAAGTTGCCACACTTGAAAGACACAAACTCCGAACACGGT
GTGCAAGCAAATAGAGCACATACCAATAGCGCATTACTTTAGCATTCCTGATGGTGGGCC
CTCTTCTGTACATGATCGAGAGAAAGGGATGGGAANGGAAGGTGGGGGCAATCTGTTTAG
GGTAGATGGGTATGTTTTACACATAGAAACGCTTAGAACAGAACAGAATGGNCCTCCTGT
TTGGCACGAAAAACACACAAAATTCGACNATGGGAAGTTAGTGAGAGTTA

consensusID : consensus_4600#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [GCAAGCAGCAAGATAAAGGCACAGTAAAAAGGCCCCAACCACCGGCAAAAAGAGAGCAGCGACGACCCCTTGCGGCTAAATTTCTTTCCAAAGGCGTAAAGGGATGAGGAGAGGGGGGGGGGCGGGGGCTGTAGAAGCAGCAGAAGGTGGCAGCAGGTAGCGATTGCCTAGTGGTTGTGGGTGACACATCGTAGTTCCTTCATTTCAATTCCATTCCTTCTCGAGCTCTGTGCGTTGGAAAAAGAAGAAGGGGTTTCTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGACACACTCAGGAGCCTCAGCCCTCCTACCCCCCGTACCCGTACACCCGTAAGCAGTTCATGGGGATTATCCAGCAGCAGCAGCACCACAGAGAACCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGTTTT]

[+] EMBL CNS08XJD             [GCAAGCAGCAAGATAAAGGCACAGTAAAAAGGCCCCAACCACCGGCAAAAAGAGAGCAGCGACGACCCCTTGCGGCTAAATTTCTTTCCAAAGGCGTAAAGGGATGAGGAGAGGGGGGGGGGCGGGGGCTGTAGAAGCAGCAGAAGGTGGCAGCAGGTAGCGATTGCCTAGTGGTTGTGGGTGACACATCGTAGTTCCTTCATTTCAATTCCATTCCTTCTCGAGCTCTGTGCGTTGGAAAAAGAAGAAGGGGTTTCTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGACACACTCAGGAGCCTCAGCCCTCCTACCCCCCGTACCCGTACACCCGTAAGCAGTTCATGGGGATTATCCAGCAGCAGCAGCACCACAGAGAACCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGTTTT]




>consensus_4600#1
GCAAGCAGCAAGATAAAGGCACAGTAAAAAGGCCCCAACCACCGGCAAAAAGAGAGCAGC
GACGACCCCTTGCGGCTAAATTTCTTTCCAAAGGCGTAAAGGGATGAGGAGAGGGGGGGG
GGCGGGGGCTGTAGAAGCAGCAGAAGGTGGCAGCAGGTAGCGATTGCCTAGTGGTTGTGG
GTGACACATCGTAGTTCCTTCATTTCAATTCCATTCCTTCTCGAGCTCTGTGCGTTGGAA
AAAGAAGAAGGGGTTTCTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGA
CACACTCAGGAGCCTCAGCCCTCCTACCCCCCGTACCCGTACACCCGTAAGCAGTTCATG
GGGATTATCCAGCAGCAGCAGCACCACAGAGAACCGTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGCCACATGTGCCCGGTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4600#0      ------------------------------------------------------------
consensus_4600#1      GCAAGCAGCAAGATAAAGGCACAGTAAAAAGGCCCCAACCACCGGCAAAAAGAGAGCAGC 60
                                                                                  

consensus_4600#0      ------------------------------------------------------------
consensus_4600#1      GACGACCCCTTGCGGCTAAATTTCTTTCCAAAGGCGTAAAGGGATGAGGAGAGGGGGGGG 120
                                                                                  

consensus_4600#0      --------------------------GTGGCAGCAGGTGGCGATGGC-TAGTGGTTGTGG 33
consensus_4600#1      GGCGGGGGCTGTAGAAGCAGCAGAAGGTGGCAGCAGGTAGCGATTGCCTAGTGGTTGTGG 180
                                                ************ ***** ** ************

consensus_4600#0      GTGACACATCGTAGTTCCTTCATTTCAATTTCATTCCTTCTCGAGCTCTGTGCGTTGGAA 93
consensus_4600#1      GTGACACATCGTAGTTCCTTCATTTCAATTCCATTCCTTCTCGAGCTCTGTGCGTTGGAA 240
                      ****************************** *****************************

consensus_4600#0      AAAGAAG---GGGATTTTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGA 150
consensus_4600#1      AAAGAAGAAGGGGTTTCTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGA 300
                      *******   *** ** *******************************************

consensus_4600#0      CACACTCAAGAGCCTCAGCCTTCCTACCCCCCCGTACCCGTACACCCGAAAGCAGTTCAT 210
consensus_4600#1      CACACTCAGGAGCCTCAGCCCTCCTACCCCCC-GTACCCGTACACCCGTAAGCAGTTCAT 359
                      ******** *********** *********** *************** ***********

consensus_4600#0      GGGGGATTATTCAGCAGCAGCAGCAGCACCACCGAGAACCGTTTGCTCCACTGTTGCTAA 270
consensus_4600#1      GGGG-ATTATCCAGCAGCAGCAGC---ACCACAGAGAACCGTTAAAAAAAAAAAAAAAAA 415
                      **** ***** *************   ***** **********      *        **

consensus_4600#0      TTGTTTCGGCCA----CCTTCTGGGTTCTACTGTAGGCGCCCCCCGCCAGCTATAATGGT 326
consensus_4600#1      AAAAAAAAAAAAAAGGCCACATGTGCCCGGTTTT-------------------------- 449
                                 *    **   ** *  *   * *                          

consensus_4600#0      GTGTTACATTTGTCGCTTAGTCGCTTGAACGTCTTGTCAAACAAAACGCCCGAAAGAAGT 386
consensus_4600#1      ------------------------------------------------------------
                                                                                  

consensus_4600#0      TACAACTTTTCCCAAAAAAGAACAAAAACAAACGGCCCCAATATATCCCCCCTACAAGTT 446
consensus_4600#1      ------------------------------------------------------------
                                                                                  

consensus_4600#0      GCCACACTTGAAAGACACAAACTCCGAACACGGTGTGCAAGCAAATAGAGCACATACCAA 506
consensus_4600#1      ------------------------------------------------------------
                                                                                  

consensus_4600#0      TAGCGCATTACTTTAGCATTCCTGATGGTGGGCCCTCTTCTGTACATGATCGAGAGAAAG 566
consensus_4600#1      ------------------------------------------------------------
                                                                                  

consensus_4600#0      GGATGGGAANGGAAGGTGGGGGCAATCTGTTTAGGGTAGATGGGTATGTTTTACACATAG 626
consensus_4600#1      ------------------------------------------------------------
                                                                                  

consensus_4600#0      AAACGCTTAGAACAGAACAGAATGGNCCTCCTGTTTGGCACGAAAAACACACAAAATTCG 686
consensus_4600#1      ------------------------------------------------------------
                                                                                  

consensus_4600#0      ACNATGGGAAGTTAGTGAGAGTTA 710
consensus_4600#1      ------------------------