cluster # 4609

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Anopheles gambiae
cluster # 4609 cluster # 4609 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4609#0 length = 714 sequences # 1

consensus_4609#1 length = 625 sequences # 2

consensusID : consensus_4609#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 714
fasta sequence

                              [CCGCGGACGCGTGGGGTTGTGGCGCAGTGCAATTGAAAGAAAACACGAGTTTCGCATATTTTAATGCGTAATGCGAACGGTTTGCGCGTGTGTTAAGGAAAAACTAAACTAAAAACTCCTTGCCAGCGATGGCCCAATCGGTAACGGCAGGTGGCTGCAAGGAACAGTCCATGATGAGCGAGCATCACACAACGCCCAAGAAGAAGGTAACGTTGGCGCTTGCAGAATGTGCCAGCGCCAACACAAGCTCGATCGAGGACGATTCTATCTTTCGCACGCTAGAAAACTTTACCGCCCAGAATGGCACAGCAAGCCCGAAGCTGCCCACCATCAAGGACTTTAGCATCCTGAAACCGATCAGCCGTGGTGCATTCGGCAAAGTGTTTCTAGGTTATAAAAACAGCGACCAGAACAAACTGTACGCCATCAAGGTGATGCAAAAGACGGAGATGATCAACAAAAACATGGTCTCGCAGGTGATAACGGAGCGAAATGCGTTGGCCCTGTCCCGTAGCCCGTTCTGCGTGACGCTGTACTACTCGCTGCAAACGCTGTCCTCCGTGTACCTCGTGATGGAATACATGGTGGGGGGCGATCTGAAATCGCTGCTCGCTATGTACGGCTTCTTCGACGAGCATACGGCACGGTTCTATGCGGCCGAAATCTGTCTCGCCCTGCAGTACCTGCACGGGCACGGCATCGTTCATCGCGATA]

[+] EMBL BM607441             [CCGCGGACGCGTGGGGTTGTGGCGCAGTGCAATTGAAAGAAAACACGAGTTTCGCATATTTTAATGCGTAATGCGAACGGTTTGCGCGTGTGTTAAGGAAAAACTAAACTAAAAACTCCTTGCCAGCGATGGCCCAATCGGTAACGGCAGGTGGCTGCAAGGAACAGTCCATGATGAGCGAGCATCACACAACGCCCAAGAAGAAGGTAACGTTGGCGCTTGCAGAATGTGCCAGCGCCAACACAAGCTCGATCGAGGACGATTCTATCTTTCGCACGCTAGAAAACTTTACCGCCCAGAATGGCACAGCAAGCCCGAAGCTGCCCACCATCAAGGACTTTAGCATCCTGAAACCGATCAGCCGTGGTGCATTCGGCAAAGTGTTTCTAGGTTATAAAAACAGCGACCAGAACAAACTGTACGCCATCAAGGTGATGCAAAAGACGGAGATGATCAACAAAAACATGGTCTCGCAGGTGATAACGGAGCGAAATGCGTTGGCCCTGTCCCGTAGCCCGTTCTGCGTGACGCTGTACTACTCGCTGCAAACGCTGTCCTCCGTGTACCTCGTGATGGAATACATGGTGGGGGGCGATCTGAAATCGCTGCTCGCTATGTACGGCTTCTTCGACGAGCATACGGCACGGTTCTATGCGGCCGAAATCTGTCTCGCCCTGCAGTACCTGCACGGGCACGGCATCGTTCATCGCGATA]




>consensus_4609#0
CCGCGGACGCGTGGGGTTGTGGCGCAGTGCAATTGAAAGAAAACACGAGTTTCGCATATT
TTAATGCGTAATGCGAACGGTTTGCGCGTGTGTTAAGGAAAAACTAAACTAAAAACTCCT
TGCCAGCGATGGCCCAATCGGTAACGGCAGGTGGCTGCAAGGAACAGTCCATGATGAGCG
AGCATCACACAACGCCCAAGAAGAAGGTAACGTTGGCGCTTGCAGAATGTGCCAGCGCCA
ACACAAGCTCGATCGAGGACGATTCTATCTTTCGCACGCTAGAAAACTTTACCGCCCAGA
ATGGCACAGCAAGCCCGAAGCTGCCCACCATCAAGGACTTTAGCATCCTGAAACCGATCA
GCCGTGGTGCATTCGGCAAAGTGTTTCTAGGTTATAAAAACAGCGACCAGAACAAACTGT
ACGCCATCAAGGTGATGCAAAAGACGGAGATGATCAACAAAAACATGGTCTCGCAGGTGA
TAACGGAGCGAAATGCGTTGGCCCTGTCCCGTAGCCCGTTCTGCGTGACGCTGTACTACT
CGCTGCAAACGCTGTCCTCCGTGTACCTCGTGATGGAATACATGGTGGGGGGCGATCTGA
AATCGCTGCTCGCTATGTACGGCTTCTTCGACGAGCATACGGCACGGTTCTATGCGGCCG
AAATCTGTCTCGCCCTGCAGTACCTGCACGGGCACGGCATCGTTCATCGCGATA

consensusID : consensus_4609#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 625
fasta sequence

                              [CGACCCACGCGTCCGGCAAAAAAAAACGAACTAACGATGTGGCGCAGTGCAATTGAAAGAAAACACGAGTTTCGCATATTTTAATGCGTAATGCGAACGGTTTGCGCGTGTGTTAAGGAAAAACTAAACTAAAAACTCCTTGCCAGCGATGGCCCAATCGGTAGCGGCAGGTGGCTGCAAGGAACAGTCCATGATGAGCGAGCATCACACAACGCCCAAGAAGAAGGTAACGTTGGCGCTTGCAGAATGTGCCAGCGCCAACACAAGCTCGAACGAGGACGATTCTATCTTTCGCACGCTAGAAAACTTTACCGCCCAGAATGGCACAGCAAGCCCGAAGCTGCCCACCATCAAGGACTTCAGCATCCTGAAACCGATCAGCCGTGGCGCATTCGGCAAAGTGTTTCTAGGTTATAAAAACAGCGACCAAAACAAACTGTACGCCATCAAGGTGATGCAAAAGACGGAGATGATCAACAAAAACATGGTCTCGCAGGTGATAACGGAGCGAAATGCGTTGGCCCTGTCCCGTAGCCCGTTCTGCGTGACGCTGTACTACTCGCTGCAAACGCTGTCCTCCGTGTACCTCGTGATGGAATACATGGTGGGGGGCGATCTGAAATCG]

[+] EMBL BM577644             [CGACCCACGCGTCCGGCAAAAAAAAACGAACTAACGATGTGGCGCAGTGCAATTGAAAGAAAACACGAGTTTCGCATATTTTAATGCGTAATGCGAACGGTTTGCGCGTGTGTTAAGGAAAAACTAAACTAAAAACTCCTTGCCAGCGATGGCCCAATCGGTAGCGGCAGGTGGCTGCAAGGAACAGTCCATGATGAGCGAGCATCACACAACGCCCAAGAAGAAGGTAACGTTGGCGCTTGCAGAATGTGCCAGCGCCAACACAAGCTCGAACGAGGACGATTCTATCTTTCGCACGCTAGAAAACTTTACCGCCCAGAATGGCACAGCAAGCCCGAAGCTGCCCACCATCAAGGACTTCAGCATCCTGAAACCGATCAGCCGTGGCGCATTCGGCAAAGTGTTTCTAGGTTATAAAAACAGCGACCAAAACAAACTGTACGCCATCAAGGTGATGCAAAAGACGGAGATGATCAACAAAAACATGGTCTCGCAGGTGATAACGGAGCGAAATGCGTTGGCCCTGTCCCGTAGCCCGTTCTGCGTGACGCTGTACTACTCGCTGCAAACGCTGTCCTCCGTGTACCTCGTGATGGAATACATGGTGGGGGGCGATCTGAAATCG]
[+] EMBL BM584430             [                  ccgAAAAACGAACTAACGTTGTGGCGCAGTGCAATTGAAAGAAAACACGAGTTTCGCATATTTTAATGCGTAATGCGAACGGTTTGCGCGTGTGTTAAGGAAAAACTAAACTAAAAACTCCTTGCCAGCGATGGCCCAATCGGTAGCGGCAGGTGACTGCAAGGAACAGTCCATGATGAGCGAGCATCACACAACGCCCAAGAAAAAGGTAACGTTGGCGCTTGCAGAATGTGCCAGCGCCAACACAAGCTCGAACGAGGACGATTCTATCTTTCGCACGCTAGAAAACTTTACCGCCCAGAATGGCACAGCAAGCCCGAAGCTGCCCACCATCAAGGACTTCAGCATCCTGAAACCGATCAGCCGTGGCGCATTCGGCAAAGTGTTTCTAGGTTATAAAAACAGCGACCAAAACAAACTGTACGCCATCAAGGTGATGCAAAAGACGGAGATGATCAACAAAAACATGGTCTCGCAGGTGATAA                                                                                                                          ]




>consensus_4609#1
CGACCCACGCGTCCGGCAAAAAAAAACGAACTAACGATGTGGCGCAGTGCAATTGAAAGA
AAACACGAGTTTCGCATATTTTAATGCGTAATGCGAACGGTTTGCGCGTGTGTTAAGGAA
AAACTAAACTAAAAACTCCTTGCCAGCGATGGCCCAATCGGTAGCGGCAGGTGGCTGCAA
GGAACAGTCCATGATGAGCGAGCATCACACAACGCCCAAGAAGAAGGTAACGTTGGCGCT
TGCAGAATGTGCCAGCGCCAACACAAGCTCGAACGAGGACGATTCTATCTTTCGCACGCT
AGAAAACTTTACCGCCCAGAATGGCACAGCAAGCCCGAAGCTGCCCACCATCAAGGACTT
CAGCATCCTGAAACCGATCAGCCGTGGCGCATTCGGCAAAGTGTTTCTAGGTTATAAAAA
CAGCGACCAAAACAAACTGTACGCCATCAAGGTGATGCAAAAGACGGAGATGATCAACAA
AAACATGGTCTCGCAGGTGATAACGGAGCGAAATGCGTTGGCCCTGTCCCGTAGCCCGTT
CTGCGTGACGCTGTACTACTCGCTGCAAACGCTGTCCTCCGTGTACCTCGTGATGGAATA
CATGGTGGGGGGCGATCTGAAATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4609#0      -------------------CCGCGGACGCG-TGGGGTTGTGGCGCAGTGCAATTGAAAGA 40
consensus_4609#1      CGACCCACGCGTCCGGCAAAAAAAAACGAACTAACGATGTGGCGCAGTGCAATTGAAAGA 60
                                               ***   *   * ***********************

consensus_4609#0      AAACACGAGTTTCGCATATTTTAATGCGTAATGCGAACGGTTTGCGCGTGTGTTAAGGAA 100
consensus_4609#1      AAACACGAGTTTCGCATATTTTAATGCGTAATGCGAACGGTTTGCGCGTGTGTTAAGGAA 120
                      ************************************************************

consensus_4609#0      AAACTAAACTAAAAACTCCTTGCCAGCGATGGCCCAATCGGTAACGGCAGGTGGCTGCAA 160
consensus_4609#1      AAACTAAACTAAAAACTCCTTGCCAGCGATGGCCCAATCGGTAGCGGCAGGTGGCTGCAA 180
                      ******************************************* ****************

consensus_4609#0      GGAACAGTCCATGATGAGCGAGCATCACACAACGCCCAAGAAGAAGGTAACGTTGGCGCT 220
consensus_4609#1      GGAACAGTCCATGATGAGCGAGCATCACACAACGCCCAAGAAGAAGGTAACGTTGGCGCT 240
                      ************************************************************

consensus_4609#0      TGCAGAATGTGCCAGCGCCAACACAAGCTCGATCGAGGACGATTCTATCTTTCGCACGCT 280
consensus_4609#1      TGCAGAATGTGCCAGCGCCAACACAAGCTCGAACGAGGACGATTCTATCTTTCGCACGCT 300
                      ******************************** ***************************

consensus_4609#0      AGAAAACTTTACCGCCCAGAATGGCACAGCAAGCCCGAAGCTGCCCACCATCAAGGACTT 340
consensus_4609#1      AGAAAACTTTACCGCCCAGAATGGCACAGCAAGCCCGAAGCTGCCCACCATCAAGGACTT 360
                      ************************************************************

consensus_4609#0      TAGCATCCTGAAACCGATCAGCCGTGGTGCATTCGGCAAAGTGTTTCTAGGTTATAAAAA 400
consensus_4609#1      CAGCATCCTGAAACCGATCAGCCGTGGCGCATTCGGCAAAGTGTTTCTAGGTTATAAAAA 420
                       ************************** ********************************

consensus_4609#0      CAGCGACCAGAACAAACTGTACGCCATCAAGGTGATGCAAAAGACGGAGATGATCAACAA 460
consensus_4609#1      CAGCGACCAAAACAAACTGTACGCCATCAAGGTGATGCAAAAGACGGAGATGATCAACAA 480
                      ********* **************************************************

consensus_4609#0      AAACATGGTCTCGCAGGTGATAACGGAGCGAAATGCGTTGGCCCTGTCCCGTAGCCCGTT 520
consensus_4609#1      AAACATGGTCTCGCAGGTGATAACGGAGCGAAATGCGTTGGCCCTGTCCCGTAGCCCGTT 540
                      ************************************************************

consensus_4609#0      CTGCGTGACGCTGTACTACTCGCTGCAAACGCTGTCCTCCGTGTACCTCGTGATGGAATA 580
consensus_4609#1      CTGCGTGACGCTGTACTACTCGCTGCAAACGCTGTCCTCCGTGTACCTCGTGATGGAATA 600
                      ************************************************************

consensus_4609#0      CATGGTGGGGGGCGATCTGAAATCGCTGCTCGCTATGTACGGCTTCTTCGACGAGCATAC 640
consensus_4609#1      CATGGTGGGGGGCGATCTGAAATCG----------------------------------- 625
                      *************************                                   

consensus_4609#0      GGCACGGTTCTATGCGGCCGAAATCTGTCTCGCCCTGCAGTACCTGCACGGGCACGGCAT 700
consensus_4609#1      ------------------------------------------------------------
                                                                                  

consensus_4609#0      CGTTCATCGCGATA 714
consensus_4609#1      --------------