cluster # 4610

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Anopheles gambiae
cluster # 4610 cluster # 4610 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4610#0 length = 822 sequences # 2

consensus_4610#1 length = 803 sequences # 1

consensusID : consensus_4610#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 822
fasta sequence

                              [CCGTGCTGAACAACGTGTTCGAAACGCGGCTGGACGCGAAAAAGTTCCTGCTCTACTACAAGCGGGCCGTGCCGCAGCGCGTCCGGGATCTTGGCATCTGGTACAACATCATGCACGTGGTCGGCAAGGTGGCCGTCATATCGAGTGCCTTTATCATCGCATTTTCCTCCAACTTTATACCCCGCCTAATGTACATGAACGTCGTCAACCCGACCGGCACGGACGAGGGCTTCGTGAACCACACGCTCGCCTACTTCAACGTGTCGCACTTCGAGGCGAATGCGGCGCCAGAGAACAGCACCTTCTCGAACATTACCATCTGCCGGTACTCGGAGTACCGGAACCCGCCGGACGATCCGCGCCCGTACAAGCGGCCCTCGATCTACTGGCAGATACTGGCGATCCGGCTCACGTTTCGTCGTGATCTACCAGAACCTCGTCAGCTTCGTGCAGATAGTGGGTGGCGTGGGCGCATACCGGACGTGCCGACCAAGCTGCAGGATCAGATCAAGCGCGAGCAGTACCTCACGAACGAGTACATCATCGAGCAGGAAAAGCTGAAGATGGCCCTGTCCGGGACGGGTGGGTGCGGTGGTGTTGGCGGTAGTGTCGCCGGCACCCGGTACGCGCAGAACGGGTGTGTCGCGTCGGAGGACAGCAGCCCGGACGACGAGAAGGCTAACTATGGCTCGATTGCGGACGACAACGAGTACCCGCTGCGGATGCAGACGGATGACTGCGAACCGTACGCCGCGTACGGCATAGTGACGTCGCGGGTGTAGGGCAGAAGAAGCTAGGAGCACACGGTGGGCACAACGTTCA]

[+] EMBL BM589065             [CCGTGCTGAACAACGTGTTCGAAACGCGGCTGGACGCGAAAAAGTTCCTGCTCTACTACAAGCGGGCCGTGCCGCAGCGCGTCCGGGATCTTGGCATCTGGTACAACATCATGCACGTGGTCGGCAAGGTGGCCGTCATATCGAGTGCCTTTATCATCGCATTTTCCTCCAACTTTATACCCCGCCTAATGTACATGAACGTCGTCAACCCGACCGGCACGGACGAGGGCTTCGTGAACCACACGCTCGCCTACTTCAACGTGTCGCACTTCGAGGCGAATGCGGCGCCAGAGAACAGCACCTTCTCGAACATTACCATCTGCCGGTACTCGGAGTACCGGAACCCGCCGGACGATCCGCGCCCGTACAAGCGGCCCTCGATCTACTGGCAGATACTGGCGATCCGGCTCACGTTTCGTCGTGATCTACCAGAACCTCGTCAGCTTCGTGCAGATAGTGGGTGGCGTGGGCGCATACCGGACGTGCCGACCAAGCTGCAGGATCAGATCAAGCGCGAGCAGTACCTCACGAA                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX614746             [                                                                                                                                                                                                                                            AACCACACGCTCGCCTACTTCTTCGTGTCGCACTTCGAGGCGAATGCGGCGCCAGAGAACAGCACCTTCTCGAACATTACCATCTGCCGGTACTCGGAGTACCGGAACCCGCCGGACGATCCGCGCCCGTACAAGCGGCCCTCGATCTACTGGCAGATACTGGCGATCCGGCTCACG TTCGTCGTGATCTACCAGAACCTCGTCAGCTTCGTGCAGATAGT GGTGGCGTGGGCG ATACCGGACGTGCCGACCAAGCTGCAGGATCAGATCAAGCGCGAGCAGTACCTCACGAACGAGTACATCATCGAGCAGGAAAAGCTGAAGATGGCCCTGTCCGGGACGGGTGGGTGCGGTGGTGTTGGCGGTAGTGTCGCCGGCACCCGGTACGCGCAGAACGGGTGTGTCGCGTCGGAGGACAGCAGCCCGGACGACGAGAAGGCTAACTATGGCTCGATTGCGGACGACAACGAGTACCCGCTGCGGATGCAGACGGATGACTGCGAACCGTACGCCGCGTACGGCATAGTGACGTCGCGGGTGTAGGGCAGAAGAAGCTAGGAGCACACGGTGGGCACAACGTTCA]




>consensus_4610#0
CCGTGCTGAACAACGTGTTCGAAACGCGGCTGGACGCGAAAAAGTTCCTGCTCTACTACA
AGCGGGCCGTGCCGCAGCGCGTCCGGGATCTTGGCATCTGGTACAACATCATGCACGTGG
TCGGCAAGGTGGCCGTCATATCGAGTGCCTTTATCATCGCATTTTCCTCCAACTTTATAC
CCCGCCTAATGTACATGAACGTCGTCAACCCGACCGGCACGGACGAGGGCTTCGTGAACC
ACACGCTCGCCTACTTCAACGTGTCGCACTTCGAGGCGAATGCGGCGCCAGAGAACAGCA
CCTTCTCGAACATTACCATCTGCCGGTACTCGGAGTACCGGAACCCGCCGGACGATCCGC
GCCCGTACAAGCGGCCCTCGATCTACTGGCAGATACTGGCGATCCGGCTCACGTTTCGTC
GTGATCTACCAGAACCTCGTCAGCTTCGTGCAGATAGTGGGTGGCGTGGGCGCATACCGG
ACGTGCCGACCAAGCTGCAGGATCAGATCAAGCGCGAGCAGTACCTCACGAACGAGTACA
TCATCGAGCAGGAAAAGCTGAAGATGGCCCTGTCCGGGACGGGTGGGTGCGGTGGTGTTG
GCGGTAGTGTCGCCGGCACCCGGTACGCGCAGAACGGGTGTGTCGCGTCGGAGGACAGCA
GCCCGGACGACGAGAAGGCTAACTATGGCTCGATTGCGGACGACAACGAGTACCCGCTGC
GGATGCAGACGGATGACTGCGAACCGTACGCCGCGTACGGCATAGTGACGTCGCGGGTGT
AGGGCAGAAGAAGCTAGGAGCACACGGTGGGCACAACGTTCA

consensusID : consensus_4610#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 803
fasta sequence

                              [CAGCACGAATCCCCCGAGGTTNAACCGACCGGCACGGACGACGGCTTCGTGAACCACACGCTCGCCTACTATCAACGTGTACGCACTTCGAGGCGAATGCGGCGCCAGAGAACAGCACCTTCTCGAACATTACCATCTGCCGGTACTCGGAGTACCGGAACCCTGCCGGGACTGATACCTGCTGGCCCGCTTAGCATAGGCNGTGCCCTACGATACTACTTGGCAGGATCTTGGGCTGAATACCTGTGGCTACACGGTTTACGCTCNGCTGATACCTAACNCATGANACACGTTCGGTCAAGCCACTATTCCCTGGTTGGCGCATGGAATTAACGNTTGGCAGGTTTGTCGCCCTGNTTTGTGTAGCATNGTAATTTACCCCCCTTTGGCGAACTGGGTTAGGCCCNTGCAACCCCAGATGGCTTATGCCAAATGTGGGAATACGNAAGGGAATTCTNAATGGCCTNGCCCTGGAAAGCGCAGATGGTNAACGCCGTNCTAAGCCTGGTGAAGACCGTAATGGTTAANCCGTAATTCGCAATTTATGCCGCGTGCAAGGGACCCAAAGGATGGGCAAGAACAAACAATGNGCCCTTATNGTGACAAANAACAGGAATAAATTNNAGNTAGGGGCAGCACCCGTTATGGGAGTTTAATCNCCCCCGGTGTGTGGTCGAAACCCCAGNATCGGGTGGGCTTTTGGACGGCAGGGACGTTATACGGGCACCTGCTNGAGCATTACAGGCATGGGTCATATACGGGGATCTCATATTGGGTGGGGACACCTGGNGTGGGGGCCTCGA]

[+] EMBL AL933622             [CAGCACGAATCCCCCGAGGTTNAACCGACCGGCACGGACGACGGCTTCGTGAACCACACGCTCGCCTACTATCAACGTGTACGCACTTCGAGGCGAATGCGGCGCCAGAGAACAGCACCTTCTCGAACATTACCATCTGCCGGTACTCGGAGTACCGGAACCCTGCCGGGACTGATACCTGCTGGCCCGCTTAGCATAGGCNGTGCCCTACGATACTACTTGGCAGGATCTTGGGCTGAATACCTGTGGCTACACGGTTTACGCTCNGCTGATACCTAACNCATGANACACGTTCGGTCAAGCCACTATTCCCTGGTTGGCGCATGGAATTAACGNTTGGCAGGTTTGTCGCCCTGNTTTGTGTAGCATNGTAATTTACCCCCCTTTGGCGAACTGGGTTAGGCCCNTGCAACCCCAGATGGCTTATGCCAAATGTGGGAATACGNAAGGGAATTCTNAATGGCCTNGCCCTGGAAAGCGCAGATGGTNAACGCCGTNCTAAGCCTGGTGAAGACCGTAATGGTTAANCCGTAATTCGCAATTTATGCCGCGTGCAAGGGACCCAAAGGATGGGCAAGAACAAACAATGNGCCCTTATNGTGACAAANAACAGGAATAAATTNNAGNTAGGGGCAGCACCCGTTATGGGAGTTTAATCNCCCCCGGTGTGTGGTCGAAACCCCAGNATCGGGTGGGCTTTTGGACGGCAGGGACGTTATACGGGCACCTGCTNGAGCATTACAGGCATGGGTCATATACGGGGATCTCATATTGGGTGGGGACACCTGGNGTGGGGGCCTCGA]




>consensus_4610#1
CAGCACGAATCCCCCGAGGTTNAACCGACCGGCACGGACGACGGCTTCGTGAACCACACG
CTCGCCTACTATCAACGTGTACGCACTTCGAGGCGAATGCGGCGCCAGAGAACAGCACCT
TCTCGAACATTACCATCTGCCGGTACTCGGAGTACCGGAACCCTGCCGGGACTGATACCT
GCTGGCCCGCTTAGCATAGGCNGTGCCCTACGATACTACTTGGCAGGATCTTGGGCTGAA
TACCTGTGGCTACACGGTTTACGCTCNGCTGATACCTAACNCATGANACACGTTCGGTCA
AGCCACTATTCCCTGGTTGGCGCATGGAATTAACGNTTGGCAGGTTTGTCGCCCTGNTTT
GTGTAGCATNGTAATTTACCCCCCTTTGGCGAACTGGGTTAGGCCCNTGCAACCCCAGAT
GGCTTATGCCAAATGTGGGAATACGNAAGGGAATTCTNAATGGCCTNGCCCTGGAAAGCG
CAGATGGTNAACGCCGTNCTAAGCCTGGTGAAGACCGTAATGGTTAANCCGTAATTCGCA
ATTTATGCCGCGTGCAAGGGACCCAAAGGATGGGCAAGAACAAACAATGNGCCCTTATNG
TGACAAANAACAGGAATAAATTNNAGNTAGGGGCAGCACCCGTTATGGGAGTTTAATCNC
CCCCGGTGTGTGGTCGAAACCCCAGNATCGGGTGGGCTTTTGGACGGCAGGGACGTTATA
CGGGCACCTGCTNGAGCATTACAGGCATGGGTCATATACGGGGATCTCATATTGGGTGGG
GACACCTGGNGTGGGGGCCTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4610#0      CCGTGCTGAACAACGTGTTCGAAACGCGGCTG---GACGCGAAAAAGTTCCTGCTCTACT 57
consensus_4610#1      -----CAGCACGAATCCCCCGAGGTTNAACCGACCGGCACGGACGACGGCTTCGTGAACC 55
                           * * ** *      ***       * *   * * ** *  *   * *  *  ** 

consensus_4610#0      ACAAGCGGGCCGTGCCGCAGCGCGTCCGGGATCTTGGCATCTGGTACAACATCAT-GCAC 116
consensus_4610#1      ACACGCTCGCCTACTATCAACGTGTACGCA--CTTCGAGGCGAATGCGGCGCCAGAGAAC 113
                      *** **  ***      ** ** ** **    *** *   *   * *  *  **  * **

consensus_4610#0      GTGGTCGGCAAGGTGGCCGTCATAT-CGAGTGCCTTTATCATCGCATTTTCCTCCAACTT 175
consensus_4610#1      AGCACCTTCTCGAACATTACCATCTGCCGGTACTCGGAGTACCGGAACCCTGCCGGGACT 173
                           *  *  *        *** * *  ** *    *  * ** *       *     *

consensus_4610#0      TATACCCC---GCCTAATGTACATGAACGTCGTCAACCCGACCGGCACGGACGAGGGCTT 232
consensus_4610#1      GATACCTGCTGGCCCGCTTAGCATAGGCNGTGCCCTACGATACTACTTGGC--AGGATCT 231
                       *****     ***   *   ***   *   * *   *    *  *  **   ***   *

consensus_4610#0      CGTGAACCACACGCTCGCCTACTTCAACGTGTCGCACTTCGAGGCGAATGCGGCGCCAGA 292
consensus_4610#1      TGGGCTGAATACCTGTGGCTAC----ACGGTTTACGCTCN---GCTGATACCTAACNCAT 284
                       * *    * **    * ****    ***  *  * **     **  ** *    *    

consensus_4610#0      GAACAGCACCTTCTCGAACATTACCATCTGCCGGT--ACTCGGAGTACCGGAACCCGCCG 350
consensus_4610#1      GAN--ACACGTTCGGTCAAGCCACTATTCCCTGGTTGGCGCATGGAATTAACGNTTGGCA 342
                      **    *** ***    *    ** **   * ***   * *   * *         * * 

consensus_4610#0      GACGATCCGCGCCCGTACAAGCGGCCCT-CGATCTACTGGCAGATACTGGCGATCCGGCT 409
consensus_4610#1      GGTTTGTCGCCCTGNTTTGTGTAGCATNGTAATTTACCCCC---CTTTGGCGAACTGGGT 399
                      *      *** *   *    *  **      ** ***   *      ****** * ** *

consensus_4610#0      CACGTTTCGTCGTGATCTACCAGAACCTCGTCAGCTTCGTGCAGATAGTGGGTGGCGTGG 469
consensus_4610#1      TAGGCCCN--TGCAACC--CCAGA-------TGGCTTATGCCAAATGTGGGAATACGNAA 448
                       * *       *  * *  *****         ****    ** **   **    **   

consensus_4610#0      GCGCATACCGGACGTGCCGACCAAGCTGCAGGATCAGAT--CAAGCGC-GAGCAGTACCT 526
consensus_4610#1      GGGAATTCTNAATGGCCTNGCCCTG--GAAAGCGCAGATGGTNAACGCCGTNCTAAGCCT 506
                      * * ** *   * *  *   **  *  * * *  *****    * *** *  *    ***

consensus_4610#0      CACGAACGAGTACATCATCGAGCAGGAAAAGCTGAAGATGGCCCTGTCCGGGACGGGTGG 586
consensus_4610#1      GGTGAAGACCGTAATGGTTAANCCGTAAT--TCGCAATTTATGCCGCGTGCAAGGGACCC 564
                         ***       **  *  * * * **     * *  *    * *   *  * **    

consensus_4610#0      GTGCGGTGGTGTTGGCGGTAGTGTCGCCGGCACCCGGT-ACGCGCAGAACGGGTGTGTCG 645
consensus_4610#1      AAAGGATGG-GCAAGAACAAACAATGNGCCCTTATNGTGACAAANAACAGGAATAAATTN 623
                          * *** *   *    *     *    *     ** **    *  * *  *   *  

consensus_4610#0      CGTCGGAGGACAGCAGCCCGGACGACGAGAAGGCTAACTATGGCTCGATTGCGGACGACA 705
consensus_4610#1      NAGNTAGGGGCAGCACCCGTTATG----GGAGTTTAATCNCCCCCGGTGTGTGGTCGAAA 679
                             ** ***** **   * *    * **  ***      *  *  ** ** *** *

consensus_4610#0      ACG-AGTACCCGCTGCGGATGCAGACGG-ATGACTGCGAACCGTACGCCGCGTACGGCAT 763
consensus_4610#1      CCCCAGNATCGGGTGGGCTTTTGGACGGCAGGGACGTTATACGGGCACCTGCTNGAGCAT 739
                       *  ** * * * ** *  *   ***** * *   *  *  **  * **   *   ****

consensus_4610#0      AGT-GACGTCGCGGGTGTA-GGGCAGAAGAAGCTAGGAGCACACGGTGGGCACAACGTTC 821
consensus_4610#1      TACAGGCATGGGTCATATACGGGGATCTCATATTGGGTGGGGACACCTGGNGTGGGGGCC 799
                          * * * *    * ** *** *    *   * ** *   **    **      *  *

consensus_4610#0      A--- 822
consensus_4610#1      TCGA 803