|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 989 fasta sequence
[CGAAAGTGACATCTACTCCAAGCTGAACGATTTCGATGTGGTGTTTGAAAATCCGGCCGAACGGCCCGACCCGATTCGAGCGGCCGTAGCAGCGGCGGCCGCTCCCGTGCCCGATTTCGACCCCCTTCTTCCGAGGCAGCAGCCGTCCAGTGGCGCCGGCGGACGCAAGGTTCTGACGAGCGACAACAGTACCGATTCGTTCGCTTCCTCCACGGCCACGTCCAGCGGAGCGCCGGTGTCTTCCGGCGCGAATGGAGACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGTAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGATGTACCACGATGGGGGACAGGTAGGTCGGCACGTGTTTGGCATCGTGCAATGAAGGTTGAATTTACTATAAAAAAAACCCACCAAACCGATTCCATTCAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGCGGCGGTTACGCGCTGAAGGAGCAGCTGCGGCGACTGTTTTGCTGCTGCTTCGTAAAGAGTAACGATTTCCTGTGATGTGATGGACAGCACTCGTTCGTTTA]
[+] EMBL BX618627 [CGAAAGTGACATCTACTCCAAGCTGAACGATTTCGATGTGGTGTTTGAAAATCCGGCCGAACGGCCCGACCCGATTCGAGCGGCCGTAGCAGCGGCGGCCGCTCCCGTGCCCGATTTCGACCCCCTTCTTCCGAGGCAGCAGCCGTCCAGTGGCGCCGGCGGACGCAAGGTTCTGACGAGCGACAACAGTACCGATTCGTTCGCTTCCTCCACGGCCACGTCCAGCGGAGCGCCGGTGTCTTCCGGCGCGAATGGAGACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGTAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGATGTACCACGATGGGGGACAGGTAGGTCGGCACGTGTTTGGCATCGTGCAATGAAGGTTGAATTTACTATAAAAAAAACCCACCAAACCGATTCCATTCAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCT ]
[+] EMBL BX614225 [ CGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGCGGCGGTTACGCGCTGAAGGAGCAGCTGCGGCGACTGTTTTGCTGCTGCTTCGTAAAGAGTAACGATTTCCTGTGATGTGATGGACAGCACTCGTTCGTTTA]
consensusID : consensus_4611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence
[ACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGCAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGATGTACCACGATGGGGGACAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGC]
[+] EMBL BX617545 [ACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGCAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGATGTACCACGATGGGGGACAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4611#0 CGAAAGTGACATCTACTCCAAGCTGAACGATTTCGATGTGGTGTTTGAAAATCCGGCCGA 60
consensus_4611#1 ------------------------------------------------------------
consensus_4611#0 ACGGCCCGACCCGATTCGAGCGGCCGTAGCAGCGGCGGCCGCTCCCGTGCCCGATTTCGA 120
consensus_4611#1 ------------------------------------------------------------
consensus_4611#0 CCCCCTTCTTCCGAGGCAGCAGCCGTCCAGTGGCGCCGGCGGACGCAAGGTTCTGACGAG 180
consensus_4611#1 ------------------------------------------------------------
consensus_4611#0 CGACAACAGTACCGATTCGTTCGCTTCCTCCACGGCCACGTCCAGCGGAGCGCCGGTGTC 240
consensus_4611#1 ------------------------------------------------------------
consensus_4611#0 TTCCGGCGCGAATGGAGACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCC 300
consensus_4611#1 -----------------ACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCC 43
*******************************************
consensus_4611#0 GTAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAA 360
consensus_4611#1 GCAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAA 103
* **********************************************************
consensus_4611#0 ACGCAACTACCGCCAGATGTACCACGATGGGGGACAGGTAGGTCGGCACGTGTTTGGCAT 420
consensus_4611#1 ACGCAACTACCGCCAGATGTACCACGATGGGGGACAG----------------------- 140
*************************************
consensus_4611#0 CGTGCAATGAAGGTTGAATTTACTATAAAAAAAACCCACCAAACCGATTCCATTCAGCAG 480
consensus_4611#1 ---------------------------------------------------------CAG 143
***
consensus_4611#0 GATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATA 540
consensus_4611#1 GATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATA 203
************************************************************
consensus_4611#0 CCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGAC 600
consensus_4611#1 CCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGAC 263
************************************************************
consensus_4611#0 GAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGC 660
consensus_4611#1 GAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGC 323
************************************************************
consensus_4611#0 ACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAAC 720
consensus_4611#1 ACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAAC 383
************************************************************
consensus_4611#0 GACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATA 780
consensus_4611#1 GACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATA 443
************************************************************
consensus_4611#0 CTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTG 840
consensus_4611#1 CTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTG 503
************************************************************
consensus_4611#0 GACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGCGGCGGTTACGCG 900
consensus_4611#1 GACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGC------------ 551
************************************************
consensus_4611#0 CTGAAGGAGCAGCTGCGGCGACTGTTTTGCTGCTGCTTCGTAAAGAGTAACGATTTCCTG 960
consensus_4611#1 ------------------------------------------------------------
consensus_4611#0 TGATGTGATGGACAGCACTCGTTCGTTTA 989
consensus_4611#1 -----------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||