|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 942 fasta sequence
[AGCCAAGAATCCCCCCGAGGTTAAATGACGGTTCAACTGACGGCGCAGTCTTATTTCTCAGACTCACCACACGAAAATAGTGCTGAGTTGTGAGCGTCGGTCGTTTTTGGGCAGTGCGTGTGTGTGTGTCTGTGCATTGTAAAAGGCAATCATTTCCCGCATTCGCGGACACCATCGGACACACGAATGGTTCCACTTTTCGGCACGCGAACACCAGCTCCTTGTAACGGGCTGTGTGTGTGTGTGTTGTGCCTTTGGTGCGGTCGNGCACCCACTGNAGGAGCGCATTCCGGCTGACTCGTCCAAACACCTCCCTTAGCAGTGGTGTTGCTAACGACCACCTCCCCCCGACGAGGAGGAGAGGAAATTGAGCCATTTCCCCCGTGGTGAGCGCGCGNGGTGGAGNGGCCACTGNGACAGACAGACAGACACAACCTCACACCGAACGGTTTCGGGTGTGCGGACTGGAGCTGGGCATCCCCGTGTTCCCGGCATTCCACCAGCAGCAGCAACAGTGAATTGGTGCGCACCGACAGGGTGGGAACCGGGGAGGGCACGGGTGGATGACCGTGTCTGCAGATGAGACTCACATGCCGTGCTGCTGCAACAGATTCCCCCGTGGTGTCGGTAGGTGGTGTNTGGTGGTGGAGTGGTGGAGCGGTGCTGTNTGATTCGAACGTGCGTTTTGATCGTCGGGCGNGACACGGGGACCACGGTACGGCGGAAGCTGGAAAGGCCGGGGGAACGTGCAGTGCNCTGTTAACCTGTTAAGTATCATCCCATGGNTCGTTAAGCGAAAACCCCGGGAATGTGCCACGAAACGGCAACTANGTANCCAGCACAGCTAAACGGATCGTGCCATTCATTCGCCTGACAGAGANCTGGCCTTTCCNGCAGAANTATTCGGACAGTCGTGANACCGGTACACCACAGATNAACCNT]
[+] EMBL AL933049 [AGCCAAGAATCCCCCCGAGGTTAAATGACGGTTCAACTGACGGCGCAGTCTTATTTCTCAGACTCACCACACGAAAATAGTGCTGAGTTGTGAGCGTCGGTCGTTTTTGGGCAGTGCGTGTGTGTGTGTCTGTGCATTGTAAAAGGCAATCATTTCCCGCATTCGCGGACACCATCGGACACACGAATGGTTCCACTTTTCGGCACGCGAACACCAGCTCCTTGTAACGGGCTGTGTGTGTGTGTGTTGTGCCTTTGGTGCGGTCGNGCACCCACTGNAGGAGCGCATTCCGGCTGACTCGTCCAAACACCTCCCTTAGCAGTGGTGTTGCTAACGACCACCTCCCCCCGACGAGGAGGAGAGGAAATTGAGCCATTTCCCCCGTGGTGAGCGCGCGNGGTGGAGNGGCCACTGNGACAGACAGACAGACACAACCTCACACCGAACGGTTTCGGGTGTGCGGACTGGAGCTGGGCATCCCCGTGTTCCCGGCATTCCACCAGCAGCAGCAACAGTGAATTGGTGCGCACCGACAGGGTGGGAACCGGGGAGGGCACGGGTGGATGACCGTGTCTGCAGATGAGACTCACATGCCGTGCTGCTGCAACAGATTCCCCCGTGGTGTCGGTAGGTGGTGTNTGGTGGTGGAGTGGTGGAGCGGTGCTGTNTGATTCGAACGTGCGTTTTGATCGTCGGGCGNGACACGGGGACCACGGTACGGCGGAAGCTGGAAAGGCCGGGGGAACGTGCAGTGCNCTGTTAACCTGTTAAGTATCATCCCATGGNTCGTTAAGCGAAAACCCCGGGAATGTGCCACGAAACGGCAACTANGTANCCAGCACAGCTAAACGGATCGTGCCATTCATTCGCCTGACAGAGANCTGGCCTTTCCNGCAGAANTATTCGGACAGTCGTGANACCGGTACACCACAGATNAACCNT]
consensusID : consensus_4614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 919 fasta sequence
[GGCGATCGCACCACACGAAAATGGCTGAGTTGTGAGCGTCGGTCGTTTTTGAGCAGTGCGTGTGTGTGTGTCTGTGCATTGTAAAAGGCAATCATTTCCCGCATCGCGGACACCATCGGACACACGAATGGTTCCACTTTTCGGCACGCGACCACCAGCTCCTTGAACGGCCTGTGTGTGTGTGTGTGTGTTTGTGTTGTGCCTTTGGTGCGGTCGGCCACCC-ACTGCTGGAGCGCATCCCGCCTAACTCGTCCAAACCACCCTCCCTTAGCAGTGGTGTGCTAACGACCCACCTCCCCGACGAGGAGGAGAGGAAATTGAGCCATTTCCCCCGTGGTGGGCGCGCGCGGGGGAGGGCCACGGACAGACAGACAGACACTACCCTCACACCGAACGGTTTCGGGTGTGCGGATGGAGCTGGGCATCCCCGTGTCCCCGGCATTCCACCAGCAGCAGCAACAGTGAATTGGTGCGCACCGACAGGGTGGGAAGGGGGAGGGCACGGGTGGATGACCGTGTCGCCAGATGAGACTCACATGCCGTGCTGCTGCAGAAGATTCCCCCGTGGTGTCGGTGGTGGTGTTTGGTGGTGGAGTGGTGGAGCGGTGCTGTTGATTCGACGTGCGTTTTGATCGTCGGCCGCACACGGGACACGGTACGGCGGAAGGCGGAAGAGGCCGGGGGGAAGGTGCAGTGCCTGTTAACCTGTTAAGTATCATCCCTGCTCGTTAAGCGAACCCCCGGAATGCGCCACCGAACCGCAACTAGTACCACACACTAACGATCGTGCATCATCGCCTGACAGAGAGTGGCCTTCCGAGAATATTTTGTAATTGTGAAGTAAACAAAAAAAACACACACACACACAACCAAGCCTTCGAAGAAACGGAAAAAAAAAAAAAAAAAAAAAAAGGGCACA]
[+] EMBL CNS09309 [GGCGATCGCACCACACGAAAATGGCTGAGTTGTGAGCGTCGGTCGTTTTTGAGCAGTGCGTGTGTGTGTGTCTGTGCATTGTAAAAGGCAATCATTTCCCGCATCGCGGACACCATCGGACACACGAATGGTTCCACTTTTCGGCACGCGACCACCAGCTCCTTGAACGGCCTGTGTGTGTGTGTGTGTGTTTGTGTTGTGCCTTTGGTGCGGTCGGCCACCC ACTGCTGGAGCGCATCCCGCCTAACTCGTCCAAACCACCCTCCCTTAGCAGTGGTGTGCTAACGACCCACCTCCCCGACGAGGAGGAGAGGAAATTGAGCCATTTCCCCCGTGGTGGGCGCGCGCGGGGGAGGGCCACGGACAGACAGACAGACACTACCCTCACACCGAACGGTTTCGGGTGTGCGGATGGAGCTGGGCATCCCCGTGTCCCCGGCATTCCACCAGCAGCAGCAACAGTGAATTGGTGCGCACCGACAGGGTGGGAAGGGGGAGGGCACGGGTGGATGACCGTGTCGCCAGATGAGACTCACATGCCGTGCTGCTGCAGAAGATTCCCCCGTGGTGTCGGTGGTGGTGTTTGGTGGTGGAGTGGTGGAGCGGTGCTGTTGATTCGACGTGCGTTTTGATCGTCGGCCGCACACGGGACACGGTACGGCGGAAGGCGGAAGAGGCCGGGGGGAAGGTGCAGTGCCTGTTAACCTGTTAAGTATCATCCCTGCTCGTTAAGCGAACCCCCGGAATGCGCCACCGAACCGCAACTAGTACCACACACTAACGATCGTGCATCATCGCCTGACAGAGAGTGGCCTTCCGAGAATATTTTGTAATTGTGAAGTAAACAAAAAAAACACACACACACACAACCAAGCCTTCGAAGAAACGGAAAAAAAAAAAAAAAAAAAAAAAGGGCACA]
[-] EMBL CNS0930A [ GTGTTGTGCCTTTGGTGCGGTCGGCCACCCAACTGCTGGAGCGCATCCCGCCTTAATCGTCCAAACCACCCTCCCTTAGAAGTGGTGTGCTAACGACCCACCTCCCCGACGAGGAGGAGAGGAAATTGAGCCATTTCCCCCGTGGTGGGCGCGCGCGGGGGAGGGCCACGGACAGACAAAAAAAAACAACCCTCAAACCGAACGGTTTCGGGTGTGCGGATGGAGCTGGGCATCCCCGTGTCCCCGGCATTCCACCAGCAGCAGCAACAGTGAATTGGTGCGCACCGACAGGGTGGGAAGGGGGA GGAACGGGTGGATGACCGTGTCGCCAGATGAAAATAACATGCCGTGCTGCTGCAGAAGATTCCCCCGTGGTGTCGGTGGTGGTGTTTGGTGGTGGAGTGGTGGAGCGGTGCTGTTGATTCGACGTGCGTTTTGATCGTCGGCCGCACACGGGACACGGTACGGCGGAAGGCGGAAGAGGCCGGGGGGAAGGTGCAGTGCCTGTTAACCTGTTAAGTATCATCCCTGCTCGTTAAGCGAACCCCCGGAATGCGCCACCGAACCGCAACTAGTACCACACACTAACGATCGTGCATCATCGCCTGACAGAGAGTGGCCTTCCGAGAATATTTTTTAATTGTGAAGTAAACAAAAAAAAAAAAAAAAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4614#0 AGCCAAGAATCCCCCCGAGGTTAAATGACGGTTCAACTGACGGCGCAGTCTTATTTCTCA 60
consensus_4614#1 --------------------------------------------------------GGCG 4
*
consensus_4614#0 GACTCACCACACGAAAATAGTGCTGAGTTGTGAGCGTCGGTCGTTTTTGGGCAGTGCGTG 120
consensus_4614#1 ATCGCACCACACGAAAATG--GCTGAGTTGTGAGCGTCGGTCGTTTTTGAGCAGTGCGTG 62
* ************** **************************** **********
consensus_4614#0 TGTGTGTGTCTGTGCATTGTAAAAGGCAATCATTTCCCGCATTCGCGGACACCATCGGAC 180
consensus_4614#1 TGTGTGTGTCTGTGCATTGTAAAAGGCAATCATTTCCCGCAT-CGCGGACACCATCGGAC 121
****************************************** *****************
consensus_4614#0 ACACGAATGGTTCCACTTTTCGGCACGCGAACACCAGCTCCTTGTAACGGGCTGTGTGTG 240
consensus_4614#1 ACACGAATGGTTCCACTTTTCGGCACGCGACCACCAGCTCCTTG-AACGGCCTGTGTGTG 180
****************************** ************* ***** *********
consensus_4614#0 TGTGTGT----------TGTGCCTTTGGTGCGGTCGNGCACCCACTGNAGGAGCGCATTC 290
consensus_4614#1 TGTGTGTGTGTTTGTGTTGTGCCTTTGGTGCGGTCGGCCACCCACTGCTGGAGCGCATCC 240
******* ******************* ********* ********* *
consensus_4614#0 CGGCTGACTCGTCCAAACA--CCTCCCTTAGCAGTGGTGTTGCTAACGACCACCTCCCCC 348
consensus_4614#1 CGCCTAACTCGTCCAAACCACCCTCCCTTAGCAGTGGTGT-GCTAACGACC-CACCTCCC 298
** ** ************ ******************* ********** * * ***
consensus_4614#0 CGACGAGGAGGAGAGGAAATTGAGCCATTTCCCCCGTGGTGAGCGCGCGNGGTGGAGNGG 408
consensus_4614#1 CGACGAGGAGGAGAGGAAATTGAGCCATTTCCCCCGTGGTGGGCGCGCGCGGGGGAGGG- 357
***************************************** ******* ** **** *
consensus_4614#0 CCACTGNGACAGACAGACAGACACAACC-TCACACCGAACGGTTTCGGGTGTGCGGACTG 467
consensus_4614#1 CCAC--GGACAGACAGACAGACACTACCCTCACACCGAACGGTTTCGGGTGTGCGGA-TG 414
**** ***************** *** **************************** **
consensus_4614#0 GAGCTGGGCATCCCCGTGTTCCCGGCATTCCACCAGCAGCAGCAACAGTGAATTGGTGCG 527
consensus_4614#1 GAGCTGGGCATCCCCGTGTCCCCGGCATTCCACCAGCAGCAGCAACAGTGAATTGGTGCG 474
******************* ****************************************
consensus_4614#0 CACCGACAGGGTGGGAACCGGGGAGGGCACGGGTGGATGACCGTGTCTGCAGATGAGACT 587
consensus_4614#1 CACCGACAGGGTGGGAAG-GGGGAGGGCACGGGTGGATGACCGTGTCGCCAGATGAGACT 533
***************** **************************** ***********
consensus_4614#0 CACATGCCGTGCTGCTGCAACAGATTCCCCCGTGGTGTCGGTAGGTGGTGTNTGGTGGTG 647
consensus_4614#1 CACATGCCGTGCTGCTGCAGAAGATTCCCCCGTGGTGTCGGT-GGTGGTGTTTGGTGGTG 592
******************* ********************* ******** ********
consensus_4614#0 GAGTGGTGGAGCGGTGCTGTNTGATTCGAACGTGCGTTTTGATCGTCGGGCGNGACACGG 707
consensus_4614#1 GAGTGGTGGAGCGGTGCTGTT-GATTCGA-CGTGCGTTTTGATCGTCGGCCGC-ACACGG 649
******************** ******* ******************* ** ******
consensus_4614#0 GGACCACGGTACGGCGGAAGCTGGAA-AGGCCGGGGG-AACGTGCAGTGCNCTGTTAACC 765
consensus_4614#1 GA--CACGGTACGGCGGAAGGCGGAAGAGGCCGGGGGGAAGGTGCAGTGCC-TGTTAACC 706
* **************** **** ********** ** ********* ********
consensus_4614#0 TGTTAAGTATCATCCCATGGNTCGTTAAGCGAAAACCCCGGGAATGTGCCACGAAACGGC 825
consensus_4614#1 TGTTAAGTATCATCCCT--GCTCGTTAAGCGA--ACCCCCGGAATGCGCCACCGAACCGC 762
**************** * *********** ***** ****** ***** *** **
consensus_4614#0 AACTANGTANCCAGCACAGCTAAACGGATCGTGCCATTCATTCGCCTGACAGAGANCTGG 885
consensus_4614#1 AACTAG-TACC--ACACA-CTAAC--GATCGTGCA--TCAT-CGCCTGACAGAGAG-TGG 812
***** ** * **** **** ******** **** ************* ***
consensus_4614#0 CCTTTCCNGCAGAANT----ATTCGGACAGTCGTGANACCGGTACAC-----CACAGATN 936
consensus_4614#1 CCTTCCGAGAATATTTTGTAATTGTGAAGTAAACAAAAAAAACACACACACACACAACCA 872
**** * * * * * *** ** * * **** ****
consensus_4614#0 AACCNT----------------------------------------- 942
consensus_4614#1 AGCCTTCGAAGAAACGGAAAAAAAAAAAAAAAAAAAAAAAGGGCACA 919
* ** *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||