These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1188 fasta sequence [GGTAACGCAAGCGCATCGTGTTCCGCGACAAGCCGCTACCTCAGTCCGCTCACTACGGTCGGCAATCTACCGTTCCGGCGCATCTGCAAGGAGTACGGCGTCGACATAACGTGCGGCGAGATGGCCTGTGCCATACCGATCATCAATGGTGCGATCCCAGGAGTGGGCGCTAACGAAGCGCCACTCGAGCGAGGATCTGTTCGGGGTGCAGCTGTGCGGCCACAACCCGAAGCTAGTCACGTACGCGGCCCAAATCATTGCCGAGAAGGCGGATGTCGACTTTATCGACCTGAACACGGGCTGCCCGATCGATCTCATCTTTAACCAGGGCGGCGGGTAG-TGCGCTGCTGCGCCGCCAGAACGTGCTGAAGGTGATGGTGCAGAGCTGTTCGCGCCTGTTGGCCGACTACGGCAAAGAGTTTACCGTGAAAGACGCGCATCGGCATCTACAACAACAAGCTGATCGCGCACGAGATGGTGCCAAAGTTTGAGGACTGGGGAGCGAGCCTGATCACGATCCACGGGCGGACGAAGGAGCAGCGCTACACCAAGCGGGCCGACTGGGAGTATCTGCAGCAGTGTGCGACCCAGGCCCAGTCCGTGCCGGTGTTTGGCAATGGGGACATCTTTGGCTACGAGGATTACGAACACATTCGCACCAAGTGTCCTAACATTGCCGGCGTAATGGTTGGCCGTGGGGCGCTGATAAAACCGTGGGTGTTTCAGGAGATTAAGGAGCGGAAAACGCTCGATCCGTCCAGCGGGGAGCGGTTCGAGATGCTGAAGCGGTACGTGAATTACGGGCTGGAGCACTGGGGCAGCGATACGAAGGGTGTGGAGACGACGCGGCGCTTCCTGCTCGAGTGGCAATCGTTCCTGTACCGGTACGTGCCGTACGGGCTGCTGGAGCGGCCGCCGCAGCGCATCAACGAGCGGCCGGATGCGTACCGCGGTCGGGACGATTTGGAAACGCTGATGGCATCGCCCAATTGTAACGATTGGGTGAAATTAAGTGAGATGCTGCTTGGACCTGTACCGGAAGGATTTAACTTTGTGCCGAAACACAAAGCCAATGCCTACTGAAAGGGGGAAATGACCGTAAGTGAATGTTGTTTTGCTTTCAAAATTCCTACTTCTCTTTCGAAGGCAGCAAAGGAAAGGATGTAAATAAAGGACTCCAGATGTAAA] [+] EMBL CNS08L1Z [GGTAACGCAAGCGCATCGTGTTCCGCGACAAGCCGCTACCTCAGTCCGCTCACTACGGTCGGCAATCTACCGTTCCGGCGCATCTGCAAGGAGTACGGCGTCGACATAACGTGCGGCGAGATGGCCTGTGCCATACCGATCATCAATGGTGCGATCCCAGGAGTGGGCGCTAACGAAGCGCCACTCGAGCGAGGATCTGTTCGGGGTGCAGCTGTGCGGCCACAACCCGAAGCTAGTCACGTACGCGGCCCAAATCATTGCCGAGAAGGCGGATGTCGACTTTATCGACCTGAACACGGGCTGCCCGATCGATCTCATCTTTAACCAGGGCGGCGGGTAG TGCGCTGCTGCGCCGCCAGAACGTGCTGAAGGTGATGGTGCAGAGCTGTTCGCGCCTGTTGGCCGACTACGGCAAAGAGTTTACCGTGAAAGACGCGCATCGGCATCTACAACAACAAGCTGATCGCGCACGAGATGGTGCCAAAGTTTGAGGACTGGGGAGCGAGCCTGATCACGATCCACGGGCGGACGAAGGAGCAGCGCTACACCAAGCGGGCCGACTGGGAGTATCTGCAGCAGTGTGCGACCCAGGCCCAGTCCGTGCCGGTGTTTGGCAATGGGGACATCTTTGGCTACGAGGATTACGAACACATTCGCACCAAGTGTCCTAACATTGCCGGCGTAATGGTTGGCCGTGGGGCGCTGATAAAACCGTGGGTGTTTCAGGAGATTAAGGAGCGGAAAACGCTCGATCCGTCCAGCGGGGAG ] [-] EMBL CNS08L20 [ ACACGGGCTGCCCGATCGATCTCATCTTTAACCAGGGCGGC GGTAGTTGCGCTG TGCGCCGCCAGAACGTGCTGAAGGTGATGGTGCAGAGCTGTTCGCGCCTGTTGGCCGACTACGGCAAAGAGTTTACCGTG AAGACGCGCATCGGCATCTACAACAACAAGCTGATCGCGCACGAGATGGTGCCAAAGTTTGAGGACTGGGGAGCGAGCCTGATCACGATCCACGGGCGGACGAAGGAGCAGCGCTACACCAAGCGGGCCGACTGGGAGTATCTGCAGCAGTGTGCGACCCAGGCCCAGT CGTGCCGGTGTTTGGCAATGGGGACATCTTTGGCTACGAGGATTACGAACACATTCGCACCAAGTGTCCTAACATTGCCGGCGTAATGGTTGGCCGTGGGGCGCTGATAAAACCGTGGGTGTTTCAGGAGATTAAGGAGCGGAAAACGCTCGATCCGTCCAGCGGGGAGCGGTTCGAGATGCTGAAGCGGTACGTGAATTACGGGCTGGAGCACTGGGGCAGCGATACGAAGGGTGTGGAGACGACGCGGCGCTTCCTGCTCGAGTGGCAATCGTTCCTGTACCGGTACGTGCCGTACGGGCTGCTGGAGCGGCCGCCGCAGCGCATCAACGAGCGGCCGGATGCGTACCGCGGTCGGGACGATTTGGAAACGCTGATGGCATCGCCCAATTGTAACGATTGGGTGAAATTAAGTGAGATGCTGCTTGGACCTGTACCGGAAGGATTTAACTTTGTGCCGAAACACAAAGCCAATGCCTACTGAAAGGGGGAAATGACCGTAAGTGAATGTTGTTTTGCTTTCAAAATTCCTACTTCTCTTTCGAAGGCAGCAAAGGAAAGGATGTAAATAAAGGACTCCAGATGTAAA] consensusID : consensus_4639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 903 fasta sequence [GGCAGAATCGGCACGAGGATTGCGAGAAGGCGGATGTCGACTTTATCGACCTGAACACGGGCTGCCCGATAGATCTCATCTTTAACCAGGGGCGGCGGTAGTGCGCTGCTGCGCCGCCAGAACGTGCTGAAGGTGATGGTACAGAGCTGTTCGCGCCTGTTGGCCGACTACGGCAAAGAGTTTACCGTGAAGACGCGCATCGGCATCTACAACAACAAGCTGATCGCGCACGAGATGGTGCCAAAGTTTGAGGACTGGGGAGCGAGCCTGATCACGATCCACGGGCGGACGAAGGAGCAGCGCTACACCAAGCGGGCCGACTGGGAGTATCTGCAGCAGTGTGCGACCCAGGCCCAGTCCGTGCCGGTGTTTGGCAATGGGGACATCTTTGGCTACGAGGATTACGAACACATTCGCACCAAGTGCCCTAACATTGCCGGCGTAATGGTGGGCCGTGGGGCGCTGATTAAACCGTGGGTGTTTCAGGAGATTAAGGAGCGGAAAACGCTCGATCCGTCCAGCGGGGAGCGGTTCGAGATGCTGAAGCGGTACGTGAATTACGGGCTGGAGCACTGGGGCAGCGATACGAAGGGTGTGGAGACGACGCGGCGCTTCCTGCTCGAGTGCATCGTTCCTGTACCGGGTACGTGCCCGTACAGGGCNTGCTGGAAGCGGGCCGGCCGGAGCGCATCAACGAAGCGGGCCGGGACNGCCGTAACCCGCGGTCACGGGACCGATTTGGAAAACGGCCTGATTGGGCATCGGCCCAAACTTGGTTNAGCGAATTGGGGTTGACACACTTACACGTTGAGGACATTGCTGGCNTTTGGGAACCTTGGTTACCCGGGAGAGGACTTTTANCGCTTTGGTNGCCCGAAAACGACCAGAAAAGCCCAATGGCCC] [+] EMBL BX467763 [GGCAGAATCGGCACGAGGATTGCGAGAAGGCGGATGTCGACTTTATCGACCTGAACACGGGCTGCCCGATAGATCTCATCTTTAACCAGGGGCGGCGGTAGTGCGCTGCTGCGCCGCCAGAACGTGCTGAAGGTGATGGTACAGAGCTGTTCGCGCCTGTTGGCCGACTACGGCAAAGAGTTTACCGTGAAGACGCGCATCGGCATCTACAACAACAAGCTGATCGCGCACGAGATGGTGCCAAAGTTTGAGGACTGGGGAGCGAGCCTGATCACGATCCACGGGCGGACGAAGGAGCAGCGCTACACCAAGCGGGCCGACTGGGAGTATCTGCAGCAGTGTGCGACCCAGGCCCAGTCCGTGCCGGTGTTTGGCAATGGGGACATCTTTGGCTACGAGGATTACGAACACATTCGCACCAAGTGCCCTAACATTGCCGGCGTAATGGTGGGCCGTGGGGCGCTGATTAAACCGTGGGTGTTTCAGGAGATTAAGGAGCGGAAAACGCTCGATCCGTCCAGCGGGGAGCGGTTCGAGATGCTGAAGCGGTACGTGAATTACGGGCTGGAGCACTGGGGCAGCGATACGAAGGGTGTGGAGACGACGCGGCGCTTCCTGCTCGAGTGCATCGTTCCTGTACCGGGTACGTGCCCGTACAGGGCNTGCTGGAAGCGGGCCGGCCGGAGCGCATCAACGAAGCGGGCCGGGACNGCCGTAACCCGCGGTCACGGGACCGATTTGGAAAACGGCCTGATTGGGCATCGGCCCAAACTTGGTTNAGCGAATTGGGGTTGACACACTTACACGTTGAGGACATTGCTGGCNTTTGGGAACCTTGGTTACCCGGGAGAGGACTTTTANCGCTTTGGTNGCCCGAAAACGACCAGAAAAGCCCAATGGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4639#0 GGTAACGCAAGCGCATCGTGTTCCGCGACAAGCCGCTACCTCAGTCCGCTCACTACGGTC 60 consensus_4639#1 ------------------------------------------------------------ consensus_4639#0 GGCAATCTACCGTTCCGGCGCATCTGCAAGGAGTACGGCGTCGACATAACGTGCGGCGAG 120 consensus_4639#1 ------------------------------------------------------------ consensus_4639#0 ATGGCCTGTGCCATACCGATCATCAATGGTGCGATCCCAGGAGTGGGCGCTAACGAAGCG 180 consensus_4639#1 ------------------------------------------------------------ consensus_4639#0 CCACTCGAGCGAGGATCTGTTCGGGGTGCAGCTGTGCGGCCACAACCCGAAGCTAGTCAC 240 consensus_4639#1 ---------------------------------------------------------GGC 3 * consensus_4639#0 GTACGCGGCCCAAATCATTGCCGAGAAGGCGGATGTCGACTTTATCGACCTGAACACGGG 300 consensus_4639#1 AGAATCGGCACGAGG-ATTGC-GAGAAGGCGGATGTCGACTTTATCGACCTGAACACGGG 61 * **** * * ***** ************************************** consensus_4639#0 CTGCCCGATCGATCTCATCTTTAACCAGGGCGGCGGGTAGTGCGCTGCTGCGCCGCCAGA 360 consensus_4639#1 CTGCCCGATAGATCTCATCTTTAACCAGGGGCGGCGGTAGTGCGCTGCTGCGCCGCCAGA 121 ********* ******************** * ************************* consensus_4639#0 ACGTGCTGAAGGTGATGGTGCAGAGCTGTTCGCGCCTGTTGGCCGACTACGGCAAAGAGT 420 consensus_4639#1 ACGTGCTGAAGGTGATGGTACAGAGCTGTTCGCGCCTGTTGGCCGACTACGGCAAAGAGT 181 ******************* **************************************** consensus_4639#0 TTACCGTGAAAGACGCGCATCGGCATCTACAACAACAAGCTGATCGCGCACGAGATGGTG 480 consensus_4639#1 TTACCGTGAA-GACGCGCATCGGCATCTACAACAACAAGCTGATCGCGCACGAGATGGTG 240 ********** ************************************************* consensus_4639#0 CCAAAGTTTGAGGACTGGGGAGCGAGCCTGATCACGATCCACGGGCGGACGAAGGAGCAG 540 consensus_4639#1 CCAAAGTTTGAGGACTGGGGAGCGAGCCTGATCACGATCCACGGGCGGACGAAGGAGCAG 300 ************************************************************ consensus_4639#0 CGCTACACCAAGCGGGCCGACTGGGAGTATCTGCAGCAGTGTGCGACCCAGGCCCAGTCC 600 consensus_4639#1 CGCTACACCAAGCGGGCCGACTGGGAGTATCTGCAGCAGTGTGCGACCCAGGCCCAGTCC 360 ************************************************************ consensus_4639#0 GTGCCGGTGTTTGGCAATGGGGACATCTTTGGCTACGAGGATTACGAACACATTCGCACC 660 consensus_4639#1 GTGCCGGTGTTTGGCAATGGGGACATCTTTGGCTACGAGGATTACGAACACATTCGCACC 420 ************************************************************ consensus_4639#0 AAGTGTCCTAACATTGCCGGCGTAATGGTTGGCCGTGGGGCGCTGATAAAACCGTGGGTG 720 consensus_4639#1 AAGTGCCCTAACATTGCCGGCGTAATGGTGGGCCGTGGGGCGCTGATTAAACCGTGGGTG 480 ***** *********************** ***************** ************ consensus_4639#0 TTTCAGGAGATTAAGGAGCGGAAAACGCTCGATCCGTCCAGCGGGGAGCGGTTCGAGATG 780 consensus_4639#1 TTTCAGGAGATTAAGGAGCGGAAAACGCTCGATCCGTCCAGCGGGGAGCGGTTCGAGATG 540 ************************************************************ consensus_4639#0 CTGAAGCGGTACGTGAATTACGGGCTGGAGCACTGGGGCAGCGATACGAAGGGTGTGGAG 840 consensus_4639#1 CTGAAGCGGTACGTGAATTACGGGCTGGAGCACTGGGGCAGCGATACGAAGGGTGTGGAG 600 ************************************************************ consensus_4639#0 ACGACGCGGCGCTTCCTGCTCGAGTGGCAATCGTTCCTGTACCGG-TACGTGCC-GTACG 898 consensus_4639#1 ACGACGCGGCGCTTCCTGCTCGAGTGC--ATCGTTCCTGTACCGGGTACGTGCCCGTACA 658 ************************** **************** ******** **** consensus_4639#0 GG--CTGCTGGA-GCGGCC--GCCGCAGCGCATCAACGAGCGGCCGGATGCGTACCGCGG 953 consensus_4639#1 GGGCNTGCTGGAAGCGGGCCGGCCGGAGCGCATCAACGAA---------GCG------GG 703 ** ******* **** * **** ************* *** ** consensus_4639#0 TCGGGACGATTTGGAAACGCTGATGGCATCGCCCAATTGTAACGATTGGGTGAAATTAAG 1013 consensus_4639#1 CCGGGACNGCC-GTAACCCGCGGTCACGGGACCGATTTGGAA--AACGGCC-----TGAT 755 ****** * ** * * * * ** * *** ** * ** * * consensus_4639#0 TGAGATGCTGCTTGGACCTGTACCGGAAGGATTTAACTTTGTGCCGAAACACAAAGCCAA 1073 consensus_4639#1 TGGGCATCGGCCCAAACTTGGTTNAG-------CGAATTGGGGTTGACACACTTACACGT 808 ** * * ** ** ** * * ** * * ** **** * * consensus_4639#0 TGCCTACTGAAAGGGGGAAATGACCGTAAGTGAATGTTGTTTTGCTTTCAAAATTCCTAC 1133 consensus_4639#1 TG---------AGGACATTGCTGGCNTTTGGGAACCTTGGTTACCCGGGAGAGGACTTTT 859 ** *** * * * *** *** ** * * * * * consensus_4639#0 TTCTCTTTCGAAGGCAGCAAAGGAAAGGATGTAAATAAAGGACTCCAGATGTAAA 1188 consensus_4639#1 ANCGCTTTGGTNGCCCGAAAACGACCAGAAAAGCCCAATGGCCC----------- 903 * **** * * * * *** ** ** ** ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||