cluster # 465

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Anopheles gambiae
cluster # 465 cluster # 465 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_465#0 length = 619 sequences # 1

consensus_465#1 length = 584 sequences # 1

consensusID : consensus_465#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [CCGCCCACGCGTCCGCTGTGTCTCTGCTGGCAGCGAACGCACTGGGTGTCCCCATCCGTCAGACGGCCATTGAAATTTTCCTTCGCTGGTGCGCGCTGCTGTCGTGTGGTCAGTGTGTGGAGTCTCCGAAACAGAGTGTGTGCGTGTTTTTTTTCCCTTCTTCTGCCCCGTGCGTGACGACGACGACGACGGTGCGTTGCGGTACTGTGCTGGGCCGGGCGTGGAAGAGGTATCAGCCAAATCGGCCAGGAAAAGAAAACAGACGCAACACACGCACGCACACATACGCGGTCTCGGGTGAGCCTGATTTGGGATAATTGAATCCACCTCCAGGGCGGACAGAGTCTCCAAAGCAAAAAAAGGGCAGCACAACCCAAGAAAGCAACGGTGCTGCCCATTTTGCTTCAACTCTAAATTGTGCGTTTGTGTCTGTGTGTGTGTGTCTGTGCACCAGAGATAGAAGTGATAACAATCAGTCGGGTCGTGCCGATCCACACCGGACCAGCAACGGTGGGGTGCAACGTCCATCCATCAGCAGCAGCAGCAGCAGCAGCAAGATTATCCCCGGGAACGGGCGGCAGGCGGCGATTCGGACGAAACATCCCTCCCACCGTGTGCC]

[+] EMBL BM623866             [CCGCCCACGCGTCCGCTGTGTCTCTGCTGGCAGCGAACGCACTGGGTGTCCCCATCCGTCAGACGGCCATTGAAATTTTCCTTCGCTGGTGCGCGCTGCTGTCGTGTGGTCAGTGTGTGGAGTCTCCGAAACAGAGTGTGTGCGTGTTTTTTTTCCCTTCTTCTGCCCCGTGCGTGACGACGACGACGACGGTGCGTTGCGGTACTGTGCTGGGCCGGGCGTGGAAGAGGTATCAGCCAAATCGGCCAGGAAAAGAAAACAGACGCAACACACGCACGCACACATACGCGGTCTCGGGTGAGCCTGATTTGGGATAATTGAATCCACCTCCAGGGCGGACAGAGTCTCCAAAGCAAAAAAAGGGCAGCACAACCCAAGAAAGCAACGGTGCTGCCCATTTTGCTTCAACTCTAAATTGTGCGTTTGTGTCTGTGTGTGTGTGTCTGTGCACCAGAGATAGAAGTGATAACAATCAGTCGGGTCGTGCCGATCCACACCGGACCAGCAACGGTGGGGTGCAACGTCCATCCATCAGCAGCAGCAGCAGCAGCAGCAAGATTATCCCCGGGAACGGGCGGCAGGCGGCGATTCGGACGAAACATCCCTCCCACCGTGTGCC]




>consensus_465#0
CCGCCCACGCGTCCGCTGTGTCTCTGCTGGCAGCGAACGCACTGGGTGTCCCCATCCGTC
AGACGGCCATTGAAATTTTCCTTCGCTGGTGCGCGCTGCTGTCGTGTGGTCAGTGTGTGG
AGTCTCCGAAACAGAGTGTGTGCGTGTTTTTTTTCCCTTCTTCTGCCCCGTGCGTGACGA
CGACGACGACGGTGCGTTGCGGTACTGTGCTGGGCCGGGCGTGGAAGAGGTATCAGCCAA
ATCGGCCAGGAAAAGAAAACAGACGCAACACACGCACGCACACATACGCGGTCTCGGGTG
AGCCTGATTTGGGATAATTGAATCCACCTCCAGGGCGGACAGAGTCTCCAAAGCAAAAAA
AGGGCAGCACAACCCAAGAAAGCAACGGTGCTGCCCATTTTGCTTCAACTCTAAATTGTG
CGTTTGTGTCTGTGTGTGTGTGTCTGTGCACCAGAGATAGAAGTGATAACAATCAGTCGG
GTCGTGCCGATCCACACCGGACCAGCAACGGTGGGGTGCAACGTCCATCCATCAGCAGCA
GCAGCAGCAGCAGCAAGATTATCCCCGGGAACGGGCGGCAGGCGGCGATTCGGACGAAAC
ATCCCTCCCACCGTGTGCC

consensusID : consensus_465#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence

                              [CCGGCACAACCCAAGAAAGCAACGGTGCTGCCCATTTTGCTTCAACTCTAAATTGTGCGTTTGTGTCTGTGTGTGTGTGTCTGTGCACCAGAGATAGAAGTGGCTGCCGTCGATGGGCTTTCTGCTACGGGTGCTCGCACACACACACACACACGCGCAGATAACAATCAGTCGGGTCGTGCCGATCCACACCGGACCAGCAACGGTGGGGTGCAACGTCCATCCATCAGCAGCAGCAGCAGCAGCAGCAAGATTATCCCCGGGAACGGGCGGCAGGCGGCGATTCGGACGAAACATCCCTCCCACCGTGTGCCGAAGCAGCAGTAGCAGCGACAGACCAGAACAGCGGACGAGTGTATGTGTGTGTGTGTGTGATAAAAGATAGAAAAAGCGCGTAAGGGCGCACATCGTGCAAGTGCAAGAAACCCGTGTATTTGCGCGTGTGAAAGAGAGAAAGAGAGAGAAAGAGAGAGGCCCACACATACTCACGGAGAGGGACGGAACTTTGCCTCAGCTATCAGTATTTCGATACGGGTCCGCCTTCTATCGGGAGGTCCGGATTTGCGTCCACACAGCAGCACAGC]

[+] EMBL BM656984             [CCGGCACAACCCAAGAAAGCAACGGTGCTGCCCATTTTGCTTCAACTCTAAATTGTGCGTTTGTGTCTGTGTGTGTGTGTCTGTGCACCAGAGATAGAAGTGGCTGCCGTCGATGGGCTTTCTGCTACGGGTGCTCGCACACACACACACACACGCGCAGATAACAATCAGTCGGGTCGTGCCGATCCACACCGGACCAGCAACGGTGGGGTGCAACGTCCATCCATCAGCAGCAGCAGCAGCAGCAGCAAGATTATCCCCGGGAACGGGCGGCAGGCGGCGATTCGGACGAAACATCCCTCCCACCGTGTGCCGAAGCAGCAGTAGCAGCGACAGACCAGAACAGCGGACGAGTGTATGTGTGTGTGTGTGTGATAAAAGATAGAAAAAGCGCGTAAGGGCGCACATCGTGCAAGTGCAAGAAACCCGTGTATTTGCGCGTGTGAAAGAGAGAAAGAGAGAGAAAGAGAGAGGCCCACACATACTCACGGAGAGGGACGGAACTTTGCCTCAGCTATCAGTATTTCGATACGGGTCCGCCTTCTATCGGGAGGTCCGGATTTGCGTCCACACAGCAGCACAGC]




>consensus_465#1
CCGGCACAACCCAAGAAAGCAACGGTGCTGCCCATTTTGCTTCAACTCTAAATTGTGCGT
TTGTGTCTGTGTGTGTGTGTCTGTGCACCAGAGATAGAAGTGGCTGCCGTCGATGGGCTT
TCTGCTACGGGTGCTCGCACACACACACACACACGCGCAGATAACAATCAGTCGGGTCGT
GCCGATCCACACCGGACCAGCAACGGTGGGGTGCAACGTCCATCCATCAGCAGCAGCAGC
AGCAGCAGCAAGATTATCCCCGGGAACGGGCGGCAGGCGGCGATTCGGACGAAACATCCC
TCCCACCGTGTGCCGAAGCAGCAGTAGCAGCGACAGACCAGAACAGCGGACGAGTGTATG
TGTGTGTGTGTGTGATAAAAGATAGAAAAAGCGCGTAAGGGCGCACATCGTGCAAGTGCA
AGAAACCCGTGTATTTGCGCGTGTGAAAGAGAGAAAGAGAGAGAAAGAGAGAGGCCCACA
CATACTCACGGAGAGGGACGGAACTTTGCCTCAGCTATCAGTATTTCGATACGGGTCCGC
CTTCTATCGGGAGGTCCGGATTTGCGTCCACACAGCAGCACAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_465#0      CCGCCCACGCGTCCGCTGTGTCTCTGCTGGCAGCGAACGCACTGGGTGTCCCCATCCGTC 60
consensus_465#1      --------------------CCGGCACAACCCAAGAAAGCAACGGTGCTGCCCATT--TT 38
                                          *    *   *   *** ***  **   * *****   * 

consensus_465#0      AGACGGCCATTGAAATTTTCCTTCGCTGGTGCGCGCTGCTGTCGTGTG-GTCAGTGTGTG 119
consensus_465#1      GCTTCAACTCTAAATTGTGCGTTTGTGTCTGTGTGTGTGTGTC-TGTGCACCAGAGATAG 97
                            *  * ** * * * ** *    ** * *    **** ****   *** *   *

consensus_465#0      GAGTCTCCGAAACAGAGTGTGTGCGTGTTTTTTTTCCCTTCTTCTGCCC---CGTGCGTG 176
consensus_465#1      AAGTGGCTGCCGTCGATGGGCTTTCTGCTACGGGTGCTCGCACACACACACACACACGCG 157
                      ***  * *     **  *  *   ** *     * *   *     * *   *   ** *

consensus_465#0      ACGACGACGA-CGACGGTGCGTTGCGGTACTGTGCTGGGCCGGGCGTGGAAGAGGTATCA 235
consensus_465#1      CAGATAACAATCAGTCGGGTCGTGCCGATCCACACCGGACCAG-CAACGGTGGGGTGCAA 216
                       **  ** * *    * *   *** *  *    * ** ** * *   *  * ***   *

consensus_465#0      GCCAAATCGGCCAGGAAAAGAAAACAGACGCAACACACGCACGCACACATACGCGGTCTC 295
consensus_465#1      CGTCCATCCATCAGCAGCAGCAG-CAGCAGCAGCAAGATTATCCCCGGGAACG-GGCGGC 274
                          ***   *** *  ** *  ***  *** **     *  * *    *** **   *

consensus_465#0      GGGTGAGCCTGATTTGGGATAATTGAATCCACCTCCAGGGCGGACAGAGTCTCCAA-AGC 354
consensus_465#1      AGGCGG---CGATTCGGACGAAAC--ATCC-CTCCCACCGTGTGCCGAAGCAGCAGTAGC 328
                      ** *     **** **   **    **** *  ***  * *  * **  *  **  ***

consensus_465#0      AAAAAAAGGGCAGCACAACCCAAGAAAGCAACGGTGCTGCCCATTTTGCTTCAACTCTAA 414
consensus_465#1      AGCGACAGACCAGAACAGCGGACGAGTGTATGTGTG-TGTGTGTGTGATAAAAGATAGAA 387
                     *   * **  *** *** *  * **  * *   *** **    * *      *  *  **

consensus_465#0      ATTGTGCGTTTGTGT-----CTGTGTGTGTGTG-----TCTGTGCACCAGAG-ATAGAAG 463
consensus_465#1      AAAGCGCGTAAGGGCGCACATCGTGCAAGTGCAAGAAACCCGTGTATTTGCGCGTGTGAA 447
                     *  * ****  * *        ***   ***        * *** *   * *  *   * 

consensus_465#0      TGATAACAATCAGTCGGGTCGTGCCGATCCACACCGGACCAGCAACGGTGGGGTGCAACG 523
consensus_465#1      AGAGAGAAAGAGAGAGAAAGAGAGAGGCCCACAC-ATACTCACGGAGAGGGACGGAACTT 506
                      ** *  **      *         *  ******   **   *   *  **   * *   

consensus_465#0      TCCATCCATCAGCAGCAGCAGCAGCAGCAGCAAGATTATCCCCGGGAACGGGCGGCAGGC 583
consensus_465#1      TGCCTCAGCTATCAGTA-TTTCGATACGGGTCCGCCTTCTATCGGGAGGTCCGGATTTGC 565
                     * * **    * *** *    *   *   *   *  *     *****      *    **

consensus_465#0      GGCGATTCGGACGAAACATCCCTCCCACCGTGTGCC 619
consensus_465#1      GTCCACACAG-CAGCACAGC---------------- 584
                     * * *  * * *   *** *