cluster # 4668

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Anopheles gambiae
cluster # 4668 cluster # 4668 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4668#0 length = 964 sequences # 2

consensus_4668#1 length = 485 sequences # 1

consensusID : consensus_4668#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 964
fasta sequence

                              [CCGATTTACTCGATTTGGTTTAATTGGTAACGAAAAGAAAACCCATCGTCGAATTTAATGTAGCGTCCGTGCTGCGGTCTGTTCCCTTGACCAGCAACCCACCAACCGGCTGCGGTTGAGCGGTTGTAGTTCCGGCGTGATAAAAGTAGTGCTCCCCCCGCGAATCCCTTGCATCTGTCCCATTCCTCCGATTGCAGGCCCCATTGTTCGTTGTGGAAGAAAATCACGATGAGCTGGTTTGCGCCACGATAGATAAAACGAGTGTTTGCTGCATCGACTGAAACTGTACCATCGCCAGCACAGCAAATCGGGAGCACGGCTCTTTTCGCCCGCATTTGCCCCTTTCCCCCCGATAGAAGTACAGCGGGAACGATGGACGCCAAAATAGAACATGTATCGGTCATTCTTCCCGTCAGCAACGATCCATTGATAGTTGGCAATGTTAGCTCTAGGAAAAGTTTAAAACGGCACTGGAATCAGCTGTCCCGGTTCCAGAAGAATTTAGCGTGCATTTTATTAGCCGGCATGTGCATTTTTTACGTCATATTTTTCGTGCTACCATTCAACGATCCGTCCCGCAGCTCCGAGGTGATCGATCCGATGGAGCACATACAGATAGCACCATTCAAGGAACGGGGCCCAACAAACGACAGACAGCGGGCCGTGGTTGATGCCGTACTGCATTCCTGGAAAGGGTACAAGGAGTACGCCTGGGGGCACGATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTTGGCCTTACTCTGGTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGGGCTTGGGTCGAGAAGTACTTAAAGTTTGACATTAACCGTGAAGTCAATTTTGTTTGAAGTAACCATTCCGTGTCGTTGGTGGGGCTGGTTGAGTGCGTATCATCTGAGCGGGCGATCGTATGTT]

[+] EMBL BM575191             [CCGATTTACTCGATTTGGTTTAATTGGTAACGAAAAGAAAACCCATCGTCGAATTTAATGTAGCGTCCGTGCTGCGGTCTGTTCCCTTGACCAGCAACCCACCAACCGGCTGCGGTTGAGCGGTTGTAGTTCCGGCGTGATAAAAGTAGTGCTCCCCCCGCGAATCCCTTGCATCTGTCCCATTCCTCCGATTGCAGGCCCCATTGTTCGTTGTGGAAGAAAATCACGATGAGCTGGTTTGCGCCACGATAGATAAAACGAGTGTTTGCTGCATCGACTGAAACTGTACCATCGCCAGCACAGCAAATCGGGAGCACGGCTCTTTTCGCCCGCATTTGCCCCTTTCCCCCCGATAGAAGTACAGCGGGAACGATGGACGCCAAAATAGAACATGTATCGGTCATTCTTCCCGTCAGCAACGATCCATTGATAGTTGGCAATGTTAGCTCTAGGAAAAGTTTAAAACGGCACTGGAATCAGCTGTCCCGGTTCCAGAAGAATTTAGCGTGCATTTTATTAGCCGGCATGTGCATTTTTTACGTCATATTTTTCGTGCTACCATTCAACGATCCGTCCCGC                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM576719             [                                                                                                                                                                                                                                                                               ccgCGACTGAAACTTTACCATCGCCAGCACAGCAAATCGGGAGCACGGCTCTTTTCGCCCGCATTTGCCGCTTTCCCCCCGATAGAAGTACAGCGGGAACGATGGACGCCAAAATAGAACATGTATCGGTCATTCTTCCCGTCAGCAACGATCCATTGATAGTTGGCAATGTTAGCTCTAGGAAAAGCTTAAAACGGCACTGGAATCAGCTGTCCCGGTTCCAGAAGAATTTAGCGTGCATTTTATTAGCCGGCATGTGCATTTTTTACGTCATATTTTTCGTGCTACCGTTCAACGATCCGTCCCGCAGCTCCGAGGTGATCGATCCGATGGAGCACATACAGATAGCACCATTCAAGGAACGGGGCCCAACAAACGACAGACAGCGGGCCGTGGTTGATGCCGTACTGCATTCCTGGAAAGGGTACAAGGAGTACGCCTGGGGGCACGATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTTGGCCTTACTCTGGTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGGGCTTGGGTCGAGAAGTACTTAAAGTTTGACATTAACCGTGAAGTCAATTTTGTTTGAAGTAACCATTCCGTGTCGTTGGTGGGGCTGGTTGAGTGCGTATCATCTGAGCGGGCGATCGTATGTT]




>consensus_4668#0
CCGATTTACTCGATTTGGTTTAATTGGTAACGAAAAGAAAACCCATCGTCGAATTTAATG
TAGCGTCCGTGCTGCGGTCTGTTCCCTTGACCAGCAACCCACCAACCGGCTGCGGTTGAG
CGGTTGTAGTTCCGGCGTGATAAAAGTAGTGCTCCCCCCGCGAATCCCTTGCATCTGTCC
CATTCCTCCGATTGCAGGCCCCATTGTTCGTTGTGGAAGAAAATCACGATGAGCTGGTTT
GCGCCACGATAGATAAAACGAGTGTTTGCTGCATCGACTGAAACTGTACCATCGCCAGCA
CAGCAAATCGGGAGCACGGCTCTTTTCGCCCGCATTTGCCCCTTTCCCCCCGATAGAAGT
ACAGCGGGAACGATGGACGCCAAAATAGAACATGTATCGGTCATTCTTCCCGTCAGCAAC
GATCCATTGATAGTTGGCAATGTTAGCTCTAGGAAAAGTTTAAAACGGCACTGGAATCAG
CTGTCCCGGTTCCAGAAGAATTTAGCGTGCATTTTATTAGCCGGCATGTGCATTTTTTAC
GTCATATTTTTCGTGCTACCATTCAACGATCCGTCCCGCAGCTCCGAGGTGATCGATCCG
ATGGAGCACATACAGATAGCACCATTCAAGGAACGGGGCCCAACAAACGACAGACAGCGG
GCCGTGGTTGATGCCGTACTGCATTCCTGGAAAGGGTACAAGGAGTACGCCTGGGGGCAC
GATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTTGGCCTTACTCTG
GTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGG
GCTTGGGTCGAGAAGTACTTAAAGTTTGACATTAACCGTGAAGTCAATTTTGTTTGAAGT
AACCATTCCGTGTCGTTGGTGGGGCTGGTTGAGTGCGTATCATCTGAGCGGGCGATCGTA
TGTT

consensusID : consensus_4668#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [CCGGCTTTTGTTTCTTGTGCAACTGCCCGGTTATGGTGTCGGTACGAATTGTAGCATGAGCGATTAGCTTCCCCCGTCGTGAAAGAGATCAAGCTCACCGACAGTCTAGCAAATCCTCCGACGGAAGAGGCACTTGCAAAGCCGGTAGCCCAACAGGCAGAAGCAAACCTTATGCAGCTAGAGGTTGTTCACCAGGAACCGAAAGAGATTGTTGACAACGAGGAAAACGTATTGGAGGAAAATCGACGTGCGCCGCTCGCTGGTGCTAAAGACTTTAAGGGCCCAACAAACGACAGACAGCGGGCCGTGGTTGATGCCGTACTGCATTCTTGGAAAGGGTACAAGGAGTACGCCTGGGGGCACGATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTCGGCCTTACTCTGGTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGGGC]

[+] EMBL BM613209             [CCGGCTTTTGTTTCTTGTGCAACTGCCCGGTTATGGTGTCGGTACGAATTGTAGCATGAGCGATTAGCTTCCCCCGTCGTGAAAGAGATCAAGCTCACCGACAGTCTAGCAAATCCTCCGACGGAAGAGGCACTTGCAAAGCCGGTAGCCCAACAGGCAGAAGCAAACCTTATGCAGCTAGAGGTTGTTCACCAGGAACCGAAAGAGATTGTTGACAACGAGGAAAACGTATTGGAGGAAAATCGACGTGCGCCGCTCGCTGGTGCTAAAGACTTTAAGGGCCCAACAAACGACAGACAGCGGGCCGTGGTTGATGCCGTACTGCATTCTTGGAAAGGGTACAAGGAGTACGCCTGGGGGCACGATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTCGGCCTTACTCTGGTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGGGC]




>consensus_4668#1
CCGGCTTTTGTTTCTTGTGCAACTGCCCGGTTATGGTGTCGGTACGAATTGTAGCATGAG
CGATTAGCTTCCCCCGTCGTGAAAGAGATCAAGCTCACCGACAGTCTAGCAAATCCTCCG
ACGGAAGAGGCACTTGCAAAGCCGGTAGCCCAACAGGCAGAAGCAAACCTTATGCAGCTA
GAGGTTGTTCACCAGGAACCGAAAGAGATTGTTGACAACGAGGAAAACGTATTGGAGGAA
AATCGACGTGCGCCGCTCGCTGGTGCTAAAGACTTTAAGGGCCCAACAAACGACAGACAG
CGGGCCGTGGTTGATGCCGTACTGCATTCTTGGAAAGGGTACAAGGAGTACGCCTGGGGG
CACGATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTCGGCCTTACT
CTGGTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCA
CGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4668#0      CCGATTTACTCGATTTGGTTTAATTGGTAACGAAAAGAAAACCCATCGTCGAATTTAATG 60
consensus_4668#1      ------------------------------------------------------------
                                                                                  

consensus_4668#0      TAGCGTCCGTGCTGCGGTCTGTTCCCTTGACCAGCAACCCACCAACCGGCTGCGGTTGAG 120
consensus_4668#1      ------------------------------------------------------------
                                                                                  

consensus_4668#0      CGGTTGTAGTTCCGGCGTGATAAAAGTAGTGCTCCCCCCGCGAATCCCTTGCATCTGTCC 180
consensus_4668#1      ------------------------------------------------------------
                                                                                  

consensus_4668#0      CATTCCTCCGATTGCAGGCCCCATTGTTCGTTGTGGAAGAAAATCACGATGAGCTGGTTT 240
consensus_4668#1      ------------------------------------------------------------
                                                                                  

consensus_4668#0      GCGCCACGATAGATAAAACGAGTGTTTGCTGCATCGACTGAAACTGTACCATCGCCAGCA 300
consensus_4668#1      ------------------------------------------------------------
                                                                                  

consensus_4668#0      CAGCAAATCGGGAGCACGGCTCTTTTCGCCCGCATTTGCCCCTTTCCCCCCGATAGAAGT 360
consensus_4668#1      ----------------------------CCGGCTTTTGTTTCTTGTGCAACTGCCCGGTT 32
                                                  ** ** ****   ***   *  *        *

consensus_4668#0      ACAGCGGGAACGATGGACGCCAAAATAGAACATGTATCGGTCATTCTTCCCGTCAGCAAC 420
consensus_4668#1      ATGGTGT---CGGTA-----CGAATTGTAGCATGAGCGATTAGCTTCCCCCGTCGTGAAA 84
                      *  * *    ** *      * ** *  * ****      *   *   ******   ** 

consensus_4668#0      GATCCATTGATAGTTGGCAATGTTAGCTCTAGGAAAAGTTTAAAACGGCACTGGAATCAG 480
consensus_4668#1      GAGATCAAGCTCACCGACAGT-CTAGC-------AAATCCTCCGACGGAAGAGGCACTTG 136
                      **      * *    * ** *  ****       ***   *   **** *  ** *   *

consensus_4668#0      CTGTCCCGGTTCCAGAAGAATTTAGCGTGCATTTTATTAGCCGGCATGTGCATTTTTTAC 540
consensus_4668#1      CAAAGCCGGTAGCCCAACAGGCAGAAGCAAACCTTAT------GCAGCTAGAGGTTGTTC 190
                      *    *****  *  ** *       *   *  ****      ***  *  *  ** * *

consensus_4668#0      GTCATATTTTTCGTGCTACCATTCAACGATCCGTCCCGCAGCTCCGAGGTGATCGATCCG 600
consensus_4668#1      ACCAGGAACCGAAAGAGATTGTT-GACAACGAGGAAAACGTATTGGAGGAAAATCGACGT 249
                        **          *  *   **  ** *   *     *   *  ****  *     *  

consensus_4668#0      ATGGAGCACATACAGATAGCACCATTCAAGGAACGGGGCCCAACAAACGACAGACAGCGG 660
consensus_4668#1      GCGCCGCTCGCTGGTGCTAAAGACTTTAAGG------GCCCAACAAACGACAGACAGCGG 303
                        *  ** *           *   ** ****      ***********************

consensus_4668#0      GCCGTGGTTGATGCCGTACTGCATTCCTGGAAAGGGTACAAGGAGTACGCCTGGGGGCAC 720
consensus_4668#1      GCCGTGGTTGATGCCGTACTGCATTCTTGGAAAGGGTACAAGGAGTACGCCTGGGGGCAC 363
                      ************************** *********************************

consensus_4668#0      GATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTTGGCCTTACTCTG 780
consensus_4668#1      GATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTCGGCCTTACTCTG 423
                      *********************************************** ************

consensus_4668#0      GTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGG 840
consensus_4668#1      GTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGG 483
                      ************************************************************

consensus_4668#0      GCTTGGGTCGAGAAGTACTTAAAGTTTGACATTAACCGTGAAGTCAATTTTGTTTGAAGT 900
consensus_4668#1      GC---------------------------------------------------------- 485
                      **                                                          

consensus_4668#0      AACCATTCCGTGTCGTTGGTGGGGCTGGTTGAGTGCGTATCATCTGAGCGGGCGATCGTA 960
consensus_4668#1      ------------------------------------------------------------
                                                                                  

consensus_4668#0      TGTT 964
consensus_4668#1      ----