cluster # 4682

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Anopheles gambiae
cluster # 4682 cluster # 4682 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4682#0 length = 645 sequences # 2

consensus_4682#1 length = 342 sequences # 1

consensusID : consensus_4682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 645
fasta sequence

                              [CCGCCCACGCGTCCGCGAGTGAATCTACATTAATAGTCCATTCGTGTATTGCGCTCAGCGTAACTAAACCACATTAAAAATCTAATAAACACACTATGAGTGAACAAAAGAAAAGAAAGAAAAAATCCAAAGAGGAAATAGCTAAGGAATTCGACTTGCCTGAAAGGAAAAGCAAAATTGCCACTATTTACAAACAAGATGGACAAGCATACTGCTTGTGTAGATCTTCCGATTCTTCGCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGAGATTGTATTAATGTGTCAGAAAAGGAAGCCAAGCATATCAAACATTACTACTGTCAGCGATGCAAAGAAGAAGACCCTTCGTTACAGACCGTTTTCCGCTTGGTCCCAGCGCCTGGTCCAATCCCGCTTCCGGAGGAAAAAAAACCTAAAAAGAAAAAGAAGGAAACTCCCATTGGTGGGTTCATCTGAGAAGCGTTGCGGTAGCTGCGACGGTTGCCTTGCCGAAAATTGTGGTAACTGTGAAGGTTGTTTGGGTCTCACTAAGAACGGCCGAAAGCAGCGTTGCGATATGCGTTTTTGCAGCAACTCAAGTACCCGGAAGAAGGACCGAGCAGCTTTAAAAGCGGGAGGAAGAAACAAA]

[+] EMBL BM585892             [CCGCCCACGCGTCCGCGAGTGAATCTACATTAATAGTCCATTCGTGTATTGCGCTCAGCGTAACTAAACCACATTAAAAATCTAATAAACACACTATGAGTGAACAAAAGAAAAGAAAGAAAAAATCCAAAGAGGAAATAGCTAAGGAATTCGACTTGCCTGAAAGGAAAAGCAAAATTGCCACTATTTACAAACAAGATGGACAAGCATACTGCTTGTGTAGATCTTCCGATTCTTCGCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGAGATTGTATTAATGTGTCAGAAAAGGAAGCCAAGCATATCAAACATTACTACTGTCAGCGATGCAAAGAAGAAGACCCTTCGTTACAGACCGTTTTCCGCTTGGTCCCAGCGCCTGGTCCAATCCCGCTTCCGGAGGAAAAAAAACCTAAAAAGAAAAAGAAGGAAACTCCCATTGGTGGGTTCATCTGAGAAGCGTTGCGGTAGCTGCGACGGTTGCCTTGCCGAAAATTGTGGTAACTGTGAAGGTTGTTTGGGTCTCACTAAGAACGGCCGAAAGCAGCGTT                                                                             ]
[+] EMBL BM607299             [                                 ccgcggacgCGTGGGTTGCGCTCAGCGTAACTAAACCACATTAAAAATCTAATAAACACACTATGAGTGAACAAAAGAAAAGAAAGAAAAAATCCAAAGAGGAAATAGCTAAGGAATTCGACTTGCCTGAAAGGAAAAGCAAAATTGCCACTATTTACAAACAAGATGGACAAGCATACTGCTTGTGTAGATCTTCCGATTCTTCGCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGAGATTGTATTAATGTGTCAGAAAAGGAAGCCAAGCATATCAAACATTACTACTGTCAGCGATGCAAAGAAGAAGACCCTTCGTTACAGACCGTTTTCCGCTTGGTCCCAGCGCCTGGTCCAATCCCGCTTCCGGAGGAAAAAAAACCTAAAAAGAAAAAGAAGGAAACTCCCATTGGT GGTTCATCTGAGAAGCGTTGCGGTAGCTGCGACGGTTGCCTTGCCGAAAATTGTGGTAACTGTGAAGGTTGTTTGGGTCTCACTAAGAACGGCCGAAAGCAGCGTTGCGATATGCGTTTTTGCAGCAACTCAAGTACCCGGAAGAAGGACCGAGCAGCTTTAAAAGCGGGAGGAAGAAACAAA]




>consensus_4682#0
CCGCCCACGCGTCCGCGAGTGAATCTACATTAATAGTCCATTCGTGTATTGCGCTCAGCG
TAACTAAACCACATTAAAAATCTAATAAACACACTATGAGTGAACAAAAGAAAAGAAAGA
AAAAATCCAAAGAGGAAATAGCTAAGGAATTCGACTTGCCTGAAAGGAAAAGCAAAATTG
CCACTATTTACAAACAAGATGGACAAGCATACTGCTTGTGTAGATCTTCCGATTCTTCGC
GATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGAGATTGTATTAATGTGT
CAGAAAAGGAAGCCAAGCATATCAAACATTACTACTGTCAGCGATGCAAAGAAGAAGACC
CTTCGTTACAGACCGTTTTCCGCTTGGTCCCAGCGCCTGGTCCAATCCCGCTTCCGGAGG
AAAAAAAACCTAAAAAGAAAAAGAAGGAAACTCCCATTGGTGGGTTCATCTGAGAAGCGT
TGCGGTAGCTGCGACGGTTGCCTTGCCGAAAATTGTGGTAACTGTGAAGGTTGTTTGGGT
CTCACTAAGAACGGCCGAAAGCAGCGTTGCGATATGCGTTTTTGCAGCAACTCAAGTACC
CGGAAGAAGGACCGAGCAGCTTTAAAAGCGGGAGGAAGAAACAAA

consensusID : consensus_4682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [CGAGGNATAAATGGAACAAGGCTTACTGCTTGGTGTAGATCTTCCGATTCTTCGCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGGNGATTGTATTAATGTGTCAGAAAAGGAAGGCAAGCTATCAAACATTACTACTGTCAGGCGATGCAAGAAGAAGAACCTTCGTTACAGACGGTTCCGCGTTGGTGCCGCGCCTGTTCNATCCCGCTCTTCGGAGGAAAAAAAACTAAAGAAAAAAGGAACTCCCCTGGGTGGGTCCCCTGGGGAANCCTTGCGGAACGGGGACGGGGCTGCGNCCTGCGGACCTGGGGGGNGGGGGTCGGCCGA]

[+] EMBL AL930379             [CGAGGNATAAATGGAACAAGGCTTACTGCTTGGTGTAGATCTTCCGATTCTTCGCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGGNGATTGTATTAATGTGTCAGAAAAGGAAGGCAAGCTATCAAACATTACTACTGTCAGGCGATGCAAGAAGAAGAACCTTCGTTACAGACGGTTCCGCGTTGGTGCCGCGCCTGTTCNATCCCGCTCTTCGGAGGAAAAAAAACTAAAGAAAAAAGGAACTCCCCTGGGTGGGTCCCCTGGGGAANCCTTGCGGAACGGGGACGGGGCTGCGNCCTGCGGACCTGGGGGGNGGGGGTCGGCCGA]




>consensus_4682#1
CGAGGNATAAATGGAACAAGGCTTACTGCTTGGTGTAGATCTTCCGATTCTTCGCGATTC
ATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGGNGATTGTATTAATGTGTCAGA
AAAGGAAGGCAAGCTATCAAACATTACTACTGTCAGGCGATGCAAGAAGAAGAACCTTCG
TTACAGACGGTTCCGCGTTGGTGCCGCGCCTGTTCNATCCCGCTCTTCGGAGGAAAAAAA
ACTAAAGAAAAAAGGAACTCCCCTGGGTGGGTCCCCTGGGGAANCCTTGCGGAACGGGGA
CGGGGCTGCGNCCTGCGGACCTGGGGGGNGGGGGTCGGCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4682#0      CCGCCCACGCGTCCGCGAGTGAATCTACATTAATAGTCCATTCGTGTATTGCGCTCAGCG 60
consensus_4682#1      ------------------------------------------------------------
                                                                                  

consensus_4682#0      TAACTAAACCACATTAAAAATCTAATAAACACACTATGAGTGAACAAAAGAAAAGAAAGA 120
consensus_4682#1      ------------------------------------------------------------
                                                                                  

consensus_4682#0      AAAAATCCAAAGAGGAAATAGCTAAGGAATTCGACTTGCCTGAAAGGAAAAGCAAAATTG 180
consensus_4682#1      ------------------------------------------------------------
                                                                                  

consensus_4682#0      CCACTATTTACAAACAAGATGGACAAG-CATACTGCTTG-TGTAGATCTTCCGATTCTTC 238
consensus_4682#1      -------CGAGGNATAAATGGAACAAGGCTTACTGCTTGGTGTAGATCTTCCGATTCTTC 53
                               *   * **   * ***** * ********* ********************

consensus_4682#0      GCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGG-AGATTGTATTAATG 297
consensus_4682#1      GCGATTCATGATTTGTTGCGATGCATGCGAAGAATGGTACCATGGGNGATTGTATTAATG 113
                      *********************************************  *************

consensus_4682#0      TGTCAGAAAAGGAAGCCAAGCATATCAAACATTACTACTGTCAG-CGATGCAAAGAAGAA 356
consensus_4682#1      TGTCAGAAAAGGAAGGCAAGC-TATCAAACATTACTACTGTCAGGCGATGCAA-GAAGAA 171
                      *************** ***** ********************** ******** ******

consensus_4682#0      GACCCTTCGTTACAGACCGTTTTCCGCTTGGTCCCAGCGCCTGGTCCAATCCCGCTTCCG 416
consensus_4682#1      GAACCTTCGTTACAGACGGTTCCGCG-TTGGTGCC-GCGCCTG-TTCNATCCCGCTCTTC 228
                      ** ************** ***   ** ***** ** ******* * * ********    

consensus_4682#0      GAGGAAAAAAAACCTAAAAAGAAAAAGAAGGAAACTCCCATTGGTGGGTTCATCTGAGAA 476
consensus_4682#1      GGAGGAAAAAAAACTAAAGAAAAAAGGAA-----CTCCCCTGGGTGGGTCCCCTGGGGAA 283
                      *  * ******* ***** * **** ***     ***** * ******* *    * ***

consensus_4682#0      GCGTTGCGGTAGCTGCGACGGTTGCCTTGCCGAAAATTGTGGTAACTGTGAAGGTTGTTT 536
consensus_4682#1      NCCTTGCGG-AACGGGGACGGGGCTGCGNCCTGCGGACCTGGGGG--GNGGGGGTCGGCC 340
                       * ****** * * * *****        **        ***     * *  *** *   

consensus_4682#0      GGGTCTCACTAAGAACGGCCGAAAGCAGCGTTGCGATATGCGTTTTTGCAGCAACTCAAG 596
consensus_4682#1      GA---------------------------------------------------------- 342
                      *                                                           

consensus_4682#0      TACCCGGAAGAAGGACCGAGCAGCTTTAAAAGCGGGAGGAAGAAACAAA 645
consensus_4682#1      -------------------------------------------------