cluster # 4710

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Anopheles gambiae
cluster # 4710 cluster # 4710 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4710#0 length = 1061 sequences # 2

consensus_4710#1 length = 646 sequences # 1

consensusID : consensus_4710#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1061
fasta sequence

                              [CCGGTCGGCTCGATGGGCAAACGCCCCACGAGGACCGGTCGAACATGATTGCCGACTATAATGCGGAAAACAGCACCAAGTTTATCTTCATGCTGTCGACACGTGCCGGTGGGCTGGGTATTAATTTGGCCACCGCCGACGTGGTCATCATCTACGATTCGGACTGGAACCCGCAGATGGATTTGCAGGCGATGGACCGTGCGCATCGTATCGGGCAGAAGAAGCAGGTGCGCGTGTTCCGCCTCATCACGGAGAACACGGTGGAGGAGAAGATTGTGGAGCGGGCGGAGGTGAAGCTGAAGCTCGACAAGCTCGTCATTCAGCAGGGTCGGCTGGTGGACAACAAGACGACCCAGCTGAACAAGGACGAAATGTTGAACATCATTCGGTTCGGTGCGAATCACGTGTTCCAGTCGCGCGATTCGGAGATTACGGACGAGGACATTGACGCGATCCTGCAGAAGGGCGAAGAGAAGACGCAGGAGCAGAACGAGAAGCTGGACAAGCTGGGGGAGAGCTCGCTGCGCAGCTTCACGCTCGACACGGACAACCTGGAGAATCGGTCGGTGTACCAGTTCCGAGGGGGAGGATTACCGCGAGAAGCAGAAGCTGCAAACGCTCGGCTCGTGGATCGAGCCGCCGAAGCGCGAGCGCAAGGCGAACTATGCGGTCGATGCGTACTTTCAAGGAGGGGTTGCGCGTGGCCGAACCGAAAGCACCGAAAGCGCCCCGCCCACCGAAGCAACCGATCGTGCAGGACTTTCAGTTCTTCCCGCCGAGGCTGTTCGAGCTGCTCGATCAGGAGATTTACCACTATCGCAAGACGGTGAACTACAAGGTGCCGAAAAACTCGGACCTCGGCGCGGAGGCGAACAAGGTGCAGCGGGAGGAGCAGCGCAAAATTGACGAAGCCGAACCGCTGACGGAAGAGGAGCTGGTGGAGAAGGAATCGCTGCTGACGCAGGGCTTCACCAACTGGACGAAGCGAGACTTTAATCAGTTCATCAAGGCAAACGAAAAGTATGGCCGCGATGATATCGAGAACATTGCGCGTGAGGTGG]

[+] EMBL BM592964             [CCGGTCGGCTCGATGGGCAAACGCCCCACGAGGACCGGTCGAACATGATTGCCGACTATAATGCGGAAAACAGCACCAAGTTTATCTTCATGCTGTCGACACGTGCCGGTGGGCTGGGTATTAATTTGGCCACCGCCGACGTGGTCATCATCTACGATTCGGACTGGAACCCGCAGATGGATTTGCAGGCGATGGACCGTGCGCATCGTATCGGGCAGAAGAAGCAGGTGCGCGTGTTCCGCCTCATCACGGAGAACACGGTGGAGGAGAAGATTGTGGAGCGGGCGGAGGTGAAGCTGAAGCTCGACAAGCTCGTCATTCAGCAGGGTCGGCTGGTGGACAACAAGACGACCCAGCTGAACAAGGACGAAATGTTGAACATCATTCGGTTCGGTGCGAATCACGTGTTCCAGTCGCGCGATTCGGAGATTACGGACGAGGACATTGACGCGATCCTGCAGAAGGGCGAAGAGAAGACGCAGGAGCAGAACGAGAAGCTGGACAAGCTGGGGGAGAGCTCGCTGCGCAGCTTCACGCTCGACACGGACAACCTGGAGAATCGGTCGGTGTACCAGTTCCGAGGGGGAGGATTACCGCGAGAAGCAGAAGCTGCAAACGCTCGGCTCGTGGATCGAGCCGCCGAAGCGCGAGCGCAAGGCGAACTATGCGGTCGATGCGTACTTTCAAGGAGGGGTTGCGCGTGGCCGA                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX620995             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGGGGGAGGATTACCGCGAGAAGCAGAAGCTGCAAACGCTCGGCTCGTGGATCGAGCCGCCGAAGCGCGAGCGTAAGGCGAACTATGCGGTCGATGCCTAC TTCAAGGAGGCGTTGCGCGTGGCCGAACCGAAAGCACCGAAAGCGCCCCGCCCACCGAAGCAACCGATCGTGCAGGACTTTCAGTTCTTCCCGCCGAGGCTGTTCGAGCTGCTCGATCAGGAGATTTACCACTATCGCAAGACGGTGAACTACAAGGTGCCGAAAAACTCGGACCTCGGCGCGGAGGCGAACAAGGTGCAGCGGGAGGAGCAGCGCAAAATTGACGAAGCCGAACCGCTGACGGAAGAGGAGCTGGTGGAGAAGGAATCGCTGCTGACGCAGGGCTTCACCAACTGGACGAAGCGAGACTTTAATCAGTTCATCAAGGCAAACGAAAAGTATGGCCGCGATGATATCGAGAACATTGCGCGTGAGGTGG]




>consensus_4710#0
CCGGTCGGCTCGATGGGCAAACGCCCCACGAGGACCGGTCGAACATGATTGCCGACTATA
ATGCGGAAAACAGCACCAAGTTTATCTTCATGCTGTCGACACGTGCCGGTGGGCTGGGTA
TTAATTTGGCCACCGCCGACGTGGTCATCATCTACGATTCGGACTGGAACCCGCAGATGG
ATTTGCAGGCGATGGACCGTGCGCATCGTATCGGGCAGAAGAAGCAGGTGCGCGTGTTCC
GCCTCATCACGGAGAACACGGTGGAGGAGAAGATTGTGGAGCGGGCGGAGGTGAAGCTGA
AGCTCGACAAGCTCGTCATTCAGCAGGGTCGGCTGGTGGACAACAAGACGACCCAGCTGA
ACAAGGACGAAATGTTGAACATCATTCGGTTCGGTGCGAATCACGTGTTCCAGTCGCGCG
ATTCGGAGATTACGGACGAGGACATTGACGCGATCCTGCAGAAGGGCGAAGAGAAGACGC
AGGAGCAGAACGAGAAGCTGGACAAGCTGGGGGAGAGCTCGCTGCGCAGCTTCACGCTCG
ACACGGACAACCTGGAGAATCGGTCGGTGTACCAGTTCCGAGGGGGAGGATTACCGCGAG
AAGCAGAAGCTGCAAACGCTCGGCTCGTGGATCGAGCCGCCGAAGCGCGAGCGCAAGGCG
AACTATGCGGTCGATGCGTACTTTCAAGGAGGGGTTGCGCGTGGCCGAACCGAAAGCACC
GAAAGCGCCCCGCCCACCGAAGCAACCGATCGTGCAGGACTTTCAGTTCTTCCCGCCGAG
GCTGTTCGAGCTGCTCGATCAGGAGATTTACCACTATCGCAAGACGGTGAACTACAAGGT
GCCGAAAAACTCGGACCTCGGCGCGGAGGCGAACAAGGTGCAGCGGGAGGAGCAGCGCAA
AATTGACGAAGCCGAACCGCTGACGGAAGAGGAGCTGGTGGAGAAGGAATCGCTGCTGAC
GCAGGGCTTCACCAACTGGACGAAGCGAGACTTTAATCAGTTCATCAAGGCAAACGAAAA
GTATGGCCGCGATGATATCGAGAACATTGCGCGTGAGGTGG

consensusID : consensus_4710#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence

                              [GGCAGAATCCGGCACGAGGCGATCCTGCAGAAGGGCGAAGAGAAGACGCAGGAGCAGAACGAGAAGCTGGACAAGCTGGGGGAGAGCTCGCTGCGCAGCTTCACGCTCGACACGGACAACCTGGAGAATCGGTCGGTGTACCAGTTCGAGGGGGAGGATTACCGCGAGAAGCAGAAGCTGCAAACGCTCGGCTCGTGGATCGAGCCGCCGAAGCGCGAGCGCAAGGCGAACTATGCGGTCGATGCGTACTTCAAGGAGGCGTTGCGCGTGGCCGAACCGAAAGCACCGAAAGCGCCCCGCCCACCGAAGCAACCGATCGTGCAGGACTTTCAGTTCTTCCCGCCGAGGCTGTTCGAGCTGCTCGATCAGGAGATTTACCACTATCGCAAGACGGTGAACTACAAGGTGCCGAAAAACTCGGACCTCGGCGCGGAGGCGAACAAGGTGCAGCGGGAGGAGCAGCGCAGAATTGACGAAGCCGAACCGCTGACGGAAGAGGAGCTGGTGGAGAAGGAATCGCTGCATGACGCAGGGCTTCAGCAACTGGACGAAGCGAGACTTNTAATCAGTTCATCAAGGCAAAACGAAAAGTATGGGCCGCTGATGATATCGAGAACATTGCGCGTGAGGTGGAAGGCAAATCGCC]

[+] EMBL BX467193             [GGCAGAATCCGGCACGAGGCGATCCTGCAGAAGGGCGAAGAGAAGACGCAGGAGCAGAACGAGAAGCTGGACAAGCTGGGGGAGAGCTCGCTGCGCAGCTTCACGCTCGACACGGACAACCTGGAGAATCGGTCGGTGTACCAGTTCGAGGGGGAGGATTACCGCGAGAAGCAGAAGCTGCAAACGCTCGGCTCGTGGATCGAGCCGCCGAAGCGCGAGCGCAAGGCGAACTATGCGGTCGATGCGTACTTCAAGGAGGCGTTGCGCGTGGCCGAACCGAAAGCACCGAAAGCGCCCCGCCCACCGAAGCAACCGATCGTGCAGGACTTTCAGTTCTTCCCGCCGAGGCTGTTCGAGCTGCTCGATCAGGAGATTTACCACTATCGCAAGACGGTGAACTACAAGGTGCCGAAAAACTCGGACCTCGGCGCGGAGGCGAACAAGGTGCAGCGGGAGGAGCAGCGCAGAATTGACGAAGCCGAACCGCTGACGGAAGAGGAGCTGGTGGAGAAGGAATCGCTGCATGACGCAGGGCTTCAGCAACTGGACGAAGCGAGACTTNTAATCAGTTCATCAAGGCAAAACGAAAAGTATGGGCCGCTGATGATATCGAGAACATTGCGCGTGAGGTGGAAGGCAAATCGCC]




>consensus_4710#1
GGCAGAATCCGGCACGAGGCGATCCTGCAGAAGGGCGAAGAGAAGACGCAGGAGCAGAAC
GAGAAGCTGGACAAGCTGGGGGAGAGCTCGCTGCGCAGCTTCACGCTCGACACGGACAAC
CTGGAGAATCGGTCGGTGTACCAGTTCGAGGGGGAGGATTACCGCGAGAAGCAGAAGCTG
CAAACGCTCGGCTCGTGGATCGAGCCGCCGAAGCGCGAGCGCAAGGCGAACTATGCGGTC
GATGCGTACTTCAAGGAGGCGTTGCGCGTGGCCGAACCGAAAGCACCGAAAGCGCCCCGC
CCACCGAAGCAACCGATCGTGCAGGACTTTCAGTTCTTCCCGCCGAGGCTGTTCGAGCTG
CTCGATCAGGAGATTTACCACTATCGCAAGACGGTGAACTACAAGGTGCCGAAAAACTCG
GACCTCGGCGCGGAGGCGAACAAGGTGCAGCGGGAGGAGCAGCGCAGAATTGACGAAGCC
GAACCGCTGACGGAAGAGGAGCTGGTGGAGAAGGAATCGCTGCATGACGCAGGGCTTCAG
CAACTGGACGAAGCGAGACTTNTAATCAGTTCATCAAGGCAAAACGAAAAGTATGGGCCG
CTGATGATATCGAGAACATTGCGCGTGAGGTGGAAGGCAAATCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4710#0      CCGGTCGGCTCGATGGGCAAACGCCCCACGAGGACCGGTCGAACATGATTGCCGACTATA 60
consensus_4710#1      ------------------------------------------------------------
                                                                                  

consensus_4710#0      ATGCGGAAAACAGCACCAAGTTTATCTTCATGCTGTCGACACGTGCCGGTGGGCTGGGTA 120
consensus_4710#1      ------------------------------------------------------------
                                                                                  

consensus_4710#0      TTAATTTGGCCACCGCCGACGTGGTCATCATCTACGATTCGGACTGGAACCCGCAGATGG 180
consensus_4710#1      ------------------------------------------------------------
                                                                                  

consensus_4710#0      ATTTGCAGGCGATGGACCGTGCGCATCGTATCGGGCAGAAGAAGCAGGTGCGCGTGTTCC 240
consensus_4710#1      ------------------------------------------------------------
                                                                                  

consensus_4710#0      GCCTCATCACGGAGAACACGGTGGAGGAGAAGATTGTGGAGCGGGCGGAGGTGAAGCTGA 300
consensus_4710#1      ------------------------------------------------------------
                                                                                  

consensus_4710#0      AGCTCGACAAGCTCGTCATTCAGCAGGGTCGGCTGGTGGACAACAAGACGACCCAGCTGA 360
consensus_4710#1      ------------------------------------------------------------
                                                                                  

consensus_4710#0      ACAAGGACGAAATGTTGAACATCATTCGGTTCGGTGCGAATCACGTGTTCCAGTCGCGCG 420
consensus_4710#1      ------------------------------------------------------------
                                                                                  

consensus_4710#0      ATTCGGAGATTACGGACGAGGACATTGACGCGATCCTGCAGAAGGGCGAAGAGAAGACGC 480
consensus_4710#1      ----------GGCAGAATCCGGCAC-GAGGCGATCCTGCAGAAGGGCGAAGAGAAGACGC 49
                                  * **    * **  ** *******************************

consensus_4710#0      AGGAGCAGAACGAGAAGCTGGACAAGCTGGGGGAGAGCTCGCTGCGCAGCTTCACGCTCG 540
consensus_4710#1      AGGAGCAGAACGAGAAGCTGGACAAGCTGGGGGAGAGCTCGCTGCGCAGCTTCACGCTCG 109
                      ************************************************************

consensus_4710#0      ACACGGACAACCTGGAGAATCGGTCGGTGTACCAGTTCCGAGGGGGAGGATTACCGCGAG 600
consensus_4710#1      ACACGGACAACCTGGAGAATCGGTCGGTGTACCAGTTC-GAGGGGGAGGATTACCGCGAG 168
                      ************************************** *********************

consensus_4710#0      AAGCAGAAGCTGCAAACGCTCGGCTCGTGGATCGAGCCGCCGAAGCGCGAGCGCAAGGCG 660
consensus_4710#1      AAGCAGAAGCTGCAAACGCTCGGCTCGTGGATCGAGCCGCCGAAGCGCGAGCGCAAGGCG 228
                      ************************************************************

consensus_4710#0      AACTATGCGGTCGATGCGTACTTTCAAGGAGGGGTTGCGCGTGGCCGAACCGAAAGCACC 720
consensus_4710#1      AACTATGCGGTCGATGCGTACTT-CAAGGAGGCGTTGCGCGTGGCCGAACCGAAAGCACC 287
                      *********************** ******** ***************************

consensus_4710#0      GAAAGCGCCCCGCCCACCGAAGCAACCGATCGTGCAGGACTTTCAGTTCTTCCCGCCGAG 780
consensus_4710#1      GAAAGCGCCCCGCCCACCGAAGCAACCGATCGTGCAGGACTTTCAGTTCTTCCCGCCGAG 347
                      ************************************************************

consensus_4710#0      GCTGTTCGAGCTGCTCGATCAGGAGATTTACCACTATCGCAAGACGGTGAACTACAAGGT 840
consensus_4710#1      GCTGTTCGAGCTGCTCGATCAGGAGATTTACCACTATCGCAAGACGGTGAACTACAAGGT 407
                      ************************************************************

consensus_4710#0      GCCGAAAAACTCGGACCTCGGCGCGGAGGCGAACAAGGTGCAGCGGGAGGAGCAGCGCAA 900
consensus_4710#1      GCCGAAAAACTCGGACCTCGGCGCGGAGGCGAACAAGGTGCAGCGGGAGGAGCAGCGCAG 467
                      *********************************************************** 

consensus_4710#0      AATTGACGAAGCCGAACCGCTGACGGAAGAGGAGCTGGTGGAGAAGGAATCGCTGC-TGA 959
consensus_4710#1      AATTGACGAAGCCGAACCGCTGACGGAAGAGGAGCTGGTGGAGAAGGAATCGCTGCATGA 527
                      ******************************************************** ***

consensus_4710#0      CGCAGGGCTTCACCAACTGGACGAAGCGAGACTTT-AATCAGTTCATCAAGGCAAA-CGA 1017
consensus_4710#1      CGCAGGGCTTCAGCAACTGGACGAAGCGAGACTTNTAATCAGTTCATCAAGGCAAAACGA 587
                      ************ *********************  ******************** ***

consensus_4710#0      AAAGTATGG-CCGC-GATGATATCGAGAACATTGCGCGTGAGGTGG------------- 1061
consensus_4710#1      AAAGTATGGGCCGCTGATGATATCGAGAACATTGCGCGTGAGGTGGAAGGCAAATCGCC 646
                      ********* **** *******************************