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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence
[GGCAGAATCGGCACGNTGGCAGATAGCACGCGATCTATGGGTTCGAGCAGTTTTCGAGCAGTTTGGAAGTACACGGATACATCACCATACAATCAGCATTCGTGTCTAAACAAAAAGAAATCATATTTAACTAATCAATCGACCAGAAGTTTAACTAACTAACGGACGAAGGCTCCATTGCCCGACGAATGAATGAATTTTTAAATGTGCCACTGGCGCGCTCTTTAAACCGTTCATTCGGCACCGGTTTGACTTTTACAGAATATCAGATTTCAGCAGCAGTAGCGCTGCAGTTAGCAGACACGGGATGGAGTTGGACGGTACAGTAAGATACATACATTGGACTCAAAATATTGTTATCTCTTTACAAGCAAAAGGGTACAAACAAAACCACATACGCAGACACACATAAACGCACGCCGATTAGAGCAGTTACTGCAGGAAAAATATTAAATGTGATCGAGTATTAACGGAAACAGGCCGTCACAGCTGTAGCCGGTGTTGGTTTCAGTTATGTATTGTGTGTGTGTGTGTGTACTAGTGTGTGTATTGTGTTGCAGAAAGCTGGGTTAAAAGCGATAGGAATGAGAACGAGGGAGGCGACACAGACAGGGTTACAAAAAAGGGGTCCTATTTAAAACCAAAACACTACTAAAAGCATCCGCTGAAGTNAACTCGTAAGCTAAACGTGGTAACAGAAAATACAAANAGTTCCAAAACTGGCGGGAAACTAAA]
[+] EMBL BX467961 [GGCAGAATCGGCACGNTGGCAGATAGCACGCGATCTATGGGTTCGAGCAGTTTTCGAGCAGTTTGGAAGTACACGGATACATCACCATACAATCAGCATTCGTGTCTAAACAAAAAGAAATCATATTTAACTAATCAATCGACCAGAAGTTTAACTAACTAACGGACGAAGGCTCCATTGCCCGACGAATGAATGAATTTTTAAATGTGCCACTGGCGCGCTCTTTAAACCGTTCATTCGGCACCGGTTTGACTTTTACAGAATATCAGATTTCAGCAGCAGTAGCGCTGCAGTTAGCAGACACGGGATGGAGTTGGACGGTACAGTAAGATACATACATTGGACTCAAAATATTGTTATCTCTTTACAAGCAAAAGGGTACAAACAAAACCACATACGCAGACACACATAAACGCACGCCGATTAGAGCAGTTACTGCAGGAAAAATATTAAATGTGATCGAGTATTAACGGAAACAGGCCGTCACAGCTGTAGCCGGTGTTGGTTTCAGTTATGTATTGTGTGTGTGTGTGTGTACTAGTGTGTGTATTGTGTTGCAGAAAGCTGGGTTAAAAGCGATAGGAATGAGAACGAGGGAGGCGACACAGACAGGGTTACAAAAAAGGGGTCCTATTTAAAACCAAAACACTACTAAAAGCATCCGCTGAAGTNAACTCGTAAGCTAAACGTGGTAACAGAAAATACAAANAGTTCCAAAACTGGCGGGAAACTAAA]
consensusID : consensus_4720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 525 fasta sequence
[TGTAGTGTCGGTAGTGGCATCCAATGCCGCCATGTTGGCGCTTTACCATTGCCGAGCAGTTCAAGCGCAGGATTTTTACATCGCGCAGGGGAGTAGTGGCCTGAGGAAGAGCGGTGCCCGGGTGGTTGTTAAATTGTAATAGTAGTAATTGTTGTGGTCGTAACACAATCGCAATGCTATCGCAACTGTGCGCTGTGTCAGAAAAAAAAGCAATAGGACCAACCCCTCCCCCCTTCCCCAAGCCCTGGTTCCTCAAAAATCCATGGTACTCCCTGGTAAGCAGGATGGGGAAAAAGTATCTAAAAATAAAAGGAAGAATTATTGCAGAAATACTCACCAATCAAACTAAACAGATTAGCACGCGATCCTATGGGTTTCGAGCAGTTTTCGAGCAGTTTGGAAGTACACGGATACATCACATACAATCAGCATTCGTGTCTAAACAAAAAGAAATCATATTTAACTAATCAATCGACCAGAAGTTTAACTAACTAACGGACGAAGGCTCCATTGCCCGACGAATGA]
[+] EMBL BX613951 [TGTAGTGTCGGTAGTGGCATCCAATGCCGCCATGTTGGCGCTTTACCATTGCCGAGCAGTTCAAGCGCAGGATTTTTACATCGCGCAGGGGAGTAGTGGCCTGAGGAAGAGCGGTGCCCGGGTGGTTGTTAAATTGTAATAGTAGTAATTGTTGTGGTCGTAACACAATCGCAATGCTATCGCAACTGTGCGCTGTGTCAGAAAAAAAAGCAATAGGACCAACCCCTCCCCCCTTCCCCAAGCCCTGGTTCCTCAAAAATCCATGGTACTCCCTGGTAAGCAGGATGGGGAAAAAGTATCTAAAAATAAAAGGAAGAATTATTGCAGAAATACTCACCAATCAAACTAAACAGATTAGCACGCGATCCTATGGGTTTCGAGCAGTTTTC ]
[+] EMBL BX609609 [ GTGGTTGTTAAATTGTAATAGTAGTAATTGTTGTGGTCGTAACACAATCGCAATGCTATCGCAACTGTGCGCTGTGTCAGAAAAAAAAGCAATAGGACCAACCCCTCCCCCCTTCCCCAAGCCCTGGTTCCTCAAAAATCCATGGTACTCCCTGGTAAGCAGGATGGGGAAAAAGTATCTAAAAATAAAAGGAAGAATTATTGCAGAAATACTCACCAATCAAACTAAACAGATTAGCACGCGATCCTATGGGTTTCGAGCAGTTTTCGAGCAGTTTGGAAGTACACGGATACATCACATACAATCAGCATTCGTGTCTAAACAAAAAGAAATCATATTTAACTAATCAATCGACCAGAAGTTTAACTAACTAACGGACGAAGGCTCCATTGCCCGACGAATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4720#0 GGCAGAATCGGCACGNTGGCAGATAGCACGCGATCTATGGGTTCGAGCAGTTTTCGAGCA 60
consensus_4720#1 ------------------------------------------------------------
consensus_4720#0 GTTTGGAAGTACACGGATACATCACCATACAATCAGCATTCGTGTCTAAACAAAAAGAAA 120
consensus_4720#1 -------------------------TGTAGTGTCGGTAGTGGCATCCA------ATGCCG 29
** ** * * * * ** * * *
consensus_4720#0 TCATATTTA-ACTAATCAATCGACCAGAAGTTTAACTAACTAACGGACGAAGGCTCCATT 179
consensus_4720#1 CCATGTTGGCGCTTTACCATTGCCGAGCAGTTCA-------AGCGCAGGATTTTTACATC 82
*** ** ** * ** * * ** **** * * ** * ** * ***
consensus_4720#0 GCCCGACGAATGAATGAATTTTTAAAT-GTGCCACTGGCGCGCTCTTTAAACCGTT-CAT 237
consensus_4720#1 GCGCAGGGGAGTAGTGGCCTGAGGAAGAGCGGTGCCCGGGTGGTTGTTAAATTGTAATAG 142
** * * * * ** * ** * * * * * * * ***** ** *
consensus_4720#0 TCGGCACCGGTTTGACTTTTACAGAATATCAG-ATTTCAGCAGCAGTAGCGCTGCAGTTA 296
consensus_4720#1 TAGTAATTGTTGTGGTCGTAACACAATCGCAATGCTATCGCAACTGT-GCGCTGTGTCAG 201
* * * * * ** * *** *** ** * *** * ** ******
consensus_4720#0 GCAGACACGGGATGGAGTTGGACGGTACAGTAAGATACATACATTGGA--CTCAAAATAT 354
consensus_4720#1 AAAAAAAAGCAATAGGACCAACCCCTCCCCCCTTCCCCAAGCCCTGGTTCCTCAAAAATC 261
* * * * ** * * * * ** * *** *******
consensus_4720#0 TGT--TATCTCTTTACAAGCAAAAGGGTACAAACAAAACCACATACGCAGACACACATAA 412
consensus_4720#1 CATGGTACTCCCTGGTAAGCAGGATGGGGAAAAAGTATCTAAAAATAAAAGGAAGAATTA 321
* ** * * ***** * ** *** * * * * * * * ** *
consensus_4720#0 ACGCACGCCGATTAGAGCAGTTACTGCAGGAAAAATATTAAATGTGATCGAGTATTAACG 472
consensus_4720#1 TTGCAGAAATACTC-ACCAATCAAACTAAACAGATTAGCACGCGATCCTATGGGTTTCGA 380
*** * * * ** * * * * * ** * * * **
consensus_4720#0 GAAACAGGCCGTCACAGCTGTAGCCGGTGTTGGTTTCAGTTATGTATTGTGTGTGTGTGT 532
consensus_4720#1 GCAGTTTTCGAGCAGTTTGGAAGTACACGGATACATCA--CATACAATCAGCATTCGTGT 438
* * * ** * ** * *** ** * * * * ****
consensus_4720#0 GTGTACTAGTGTGTGTATTGTGTTGCAGAAAGCTGGGTTAAAAGCGATAGGAATGAGAAC 592
consensus_4720#1 CTAAACAAAAAGAAATCATATTTAACTAATCAATCGACCAGAAGTTTAACTAACTAACG- 497
* ** * * * * * * * * * * *** * ** *
consensus_4720#0 GAGGGAGGCGACACAGACAGGGTTACAAAAAAGGGGTCCTATTTAAAACCAAAACACTAC 652
consensus_4720#1 GACGAAGGCTCCATTGCCCGACGAATGA-------------------------------- 525
** * **** ** * * * * *
consensus_4720#0 TAAAAGCATCCGCTGAAGTNAACTCGTAAGCTAAACGTGGTAACAGAAAATACAAANAGT 712
consensus_4720#1 ------------------------------------------------------------
consensus_4720#0 TCCAAAACTGGCGGGAAACTAAA 735
consensus_4720#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||