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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence
[CTTATACCGATATTTTATTGCATACGTCATTCATAGTCAAACTCCAATCCACTGCCTTCAAAATGGTCCCTTATCCAGCCGTCGAATCGTGCAGACAATGCCGAGTCCATGTGATTTTTCCAATCGCCAATCTCGCCTTTGCGAATGAACTTCACTCCTGCATCATTCTGGATGATCGGTGAATCTTTCATCAGTGGCTCCAGATTAACGGCGGGGTTGCGCTGCATCCGTTCAAACTGCAGGTGATCACACATTGTTTGCACCTCCCCGTCGGTCAAGGCACGGCCAAATTCCAGAAATTCAGCACACTGTCTTATCACGGTCGGCAAGTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTTCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTTTTTGACGGCTAATCGGAAATAAGCAAGTCAATAACTCCGCATTAATATATGTCTCACCCGTTTTTGTCGATCTTATCCATATCCATAACTTACGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAACATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATT]
[+] EMBL CNS08G80 [CTTATACCGATATTTTATTGCATACGTCATTCATAGTCAAACTCCAATCCACTGCCTTCAAAATGGTCCCTTATCCAGCCGTCGAATCGTGCAGACAATGCCGAGTCCATGTGATTTTTCCAATCGCCAATCTCGCCTTTGCGAATGAACTTCACTCCTGCATCATTCTGGATGATCGGTGAATCTTTCATCAGTGGCTCCAGATTAACGGCGGGGTTGCGCTGCATCCGTTCAAACTGCAGGTGATCACACATTGTTTGCACCTCCCCGTCGGTCAAGGCACGGCCAAATTCCAGAAATTCAGCACACTGTCTTATCACGGTCGGCAAGTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTTCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTTTTTGACGGCTAATCGGAAATAAGCAAGTCAATAACTCCGCATTAATATATGTCTCACCCGTTTTTGTCGATCTTATCCATATCCATAACTTACGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAACATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATT]
[-] EMBL CNS08G7Z [ AGTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTCCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTA CTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACAAAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAA TTTTTTCATGACGGCTAATCGGAAATAAGCAAGTCAATAACTCCGCATTAATATAT TTTCACCC ]
consensusID : consensus_4753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence
[GTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTCCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTCATGACGGGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAAGATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATTGATTGCGGGCTGCCTCATAGTCGAGATTGTTACCCAGCAGCCAAACCATCTCTTGAGCCCAGGTCGATCCAGCCCTTGGGAAAGACATTAGCCACACATCGTTTGAACGGATCGGCAAATCACGGATCGAATCGCCTATATCGGCGAATGCTTTCGGCATAACCACTCGACCCGGATTAACCTCGATGAAGTGATCCCGACGGCCAAAGAACGCTTCCAACCGTTCTCTAAACTCATCGCCGAGCGGATTGTACTCGAAGTTCATTCTGACACTAAACTTTTCGGACTTTATTAGGGTGCGAATAAGACTTGCGAGGACTAGATCCTGCGATCGAACACCACTAGCAATACTAGCAATC]
[-] EMBL BX625899 [GTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTCCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTCATGACGGGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAAGATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATTGATTGCGGGCTGCCTCATAGTCGAGATTGTTACCCAGCAGCCAAACCATCTCTTGAGCCCAGGTCGATCCAGCCCTTGGGAAAGACATTAGCCACACATCGTTTGAACGGATCGGCAAATCACGGATCGAATCGCCTATATCGGCGAATGCTTTCGGCATAACCACTCGACCCGGATTAACCTCGATGAAGTGATCCCGACGGCCAAAGAACGCTTCCAACCGTTCTCTAAACTCATCGCCGAGCGGATTGTACTCGAAGTTCATTCTGACACTAAACTTTTCGGACTTTATTAGGGTGCGAATAAGACTTGCGAGGACTAGATCCTGCGATCGAACACCACTAGCAATACTAGCAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4753#0 CTTATACCGATATTTTATTGCATACGTCATTCATAGTCAAACTCCAATCCACTGCCTTCA 60
consensus_4753#1 ------------------------------------------------------------
consensus_4753#0 AAATGGTCCCTTATCCAGCCGTCGAATCGTGCAGACAATGCCGAGTCCATGTGATTTTTC 120
consensus_4753#1 ------------------------------------------------------------
consensus_4753#0 CAATCGCCAATCTCGCCTTTGCGAATGAACTTCACTCCTGCATCATTCTGGATGATCGGT 180
consensus_4753#1 ------------------------------------------------------------
consensus_4753#0 GAATCTTTCATCAGTGGCTCCAGATTAACGGCGGGGTTGCGCTGCATCCGTTCAAACTGC 240
consensus_4753#1 ------------------------------------------------------------
consensus_4753#0 AGGTGATCACACATTGTTTGCACCTCCCCGTCGGTCAAGGCACGGCCAAATTCCAGAAAT 300
consensus_4753#1 ------------------------------------------------------------
consensus_4753#0 TCAGCACACTGTCTTATCACGGTCGGCAAGTTGCGCTTCATGTCCTCGTACTTCAAGAAA 360
consensus_4753#1 -----------------------------GTTGCGCTTCATGTCCTCGTACTTCAAGAAA 31
*******************************
consensus_4753#0 AGAATATTGCCCTGGTTGCGTCGCTTTCAGAAAGCCAGTGCATGGGCCCACATTGGCCCG 420
consensus_4753#1 AGAATATTGCCCTGGTTGCGTCGCTTCCAGAAAGCCAGTGCATGGGCCCACATTGGCCCG 91
************************** *********************************
consensus_4753#0 ATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGA 480
consensus_4753#1 ATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGA 151
************************************************************
consensus_4753#0 TGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACA 540
consensus_4753#1 TGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACA 211
************************************************************
consensus_4753#0 TAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGC 600
consensus_4753#1 TAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGC 271
************************************************************
consensus_4753#0 GATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTTT 660
consensus_4753#1 GATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTCA 331
**********************************************************
consensus_4753#0 T------TGACGGC-------------TAATCGG-AAATAAGCAAGTCAATAACTCC-GC 699
consensus_4753#1 TGACGGGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAAGATGGCCGAAAGCTCGAGC 391
* * **** **** * *** * * * * *** **
consensus_4753#0 ATTAATATATGTCTCACCCGTTTTTGT---CGATCTTATCCATATCCATAACT--TAC-- 752
consensus_4753#1 AAGGGTGTGCGGACTTGCTGTAATTGATTGCGGGCTGCCTCATAGTCGAGATTGTTACCC 451
* * * * * ** *** ** ** **** * * * ***
consensus_4753#0 ----GTCACGGTGTCTTCCACACTGCGATCGTCGGAAAACATGGCCGAAAGCTCGAGCAA 808
consensus_4753#1 AGCAGCCAAACCATCTCTTGAGCCCAGGTCGATCCAGCCCTTGGGAAAGACATTAGCCAC 511
* ** *** * * *** * * *** * * * **
consensus_4753#0 GGGT-GTGCGGACTTGCTG-TAATT----------------------------------- 831
consensus_4753#1 ACATCGTTTGAACGGATCGGCAAATCACGGATCGAATCGCCTATATCGGCGAATGCTTTC 571
* ** * ** * ** *
consensus_4753#0 ------------------------------------------------------------
consensus_4753#1 GGCATAACCACTCGACCCGGATTAACCTCGATGAAGTGATCCCGACGGCCAAAGAACGCT 631
consensus_4753#0 ------------------------------------------------------------
consensus_4753#1 TCCAACCGTTCTCTAAACTCATCGCCGAGCGGATTGTACTCGAAGTTCATTCTGACACTA 691
consensus_4753#0 ------------------------------------------------------------
consensus_4753#1 AACTTTTCGGACTTTATTAGGGTGCGAATAAGACTTGCGAGGACTAGATCCTGCGATCGA 751
consensus_4753#0 ------------------------
consensus_4753#1 ACACCACTAGCAATACTAGCAATC 775
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||