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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 706 fasta sequence
[CCGCGGACGCGTGGGGAATAAGTGCAATAATGTGTCGTCTACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGAGAGAGAGAGAGAGAGATAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACAGAAGAGTAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCGCAAGTGCTCGATCAACTACTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACACTTTTGCACACCCGTCAACAGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGAATTATGGACCGATGATACATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGCACTAAACGTTAGGGACAAACTGTACTATGGATTCCCACACTGTATAGCTGCAGTGCTCAATACA]
[+] EMBL BM600343 [CCGCGGACGCGTGGGGAATAAGTGCAATAATGTGTCGTCTACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGAGAGAGAGAGAGAGAGATAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACAGAAGAGTAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCGCAAGTGCTCGATCAACTACTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACACTTTTGCACACCCGTCAACAGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGAATTATGGACCGATGATACATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGCACTAAACGT ]
[+] EMBL BM587401 [ ccgATGTGTCGTCTACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGAGAGAGAGAGAGAGAGATAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACAGAAGAGTAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCGCAAGTGCTCGATCAACTACTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACACTTTTGCACACCCGTCAACAGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGAATTATGGACCGATGATACATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGCACTAAACGTTAGGGACAAACTGTACTATGGATTCCCACACTGTATAGCTGCAGTGCTCAATACA]
consensusID : consensus_4758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[CCGTGCTGAAATGATGCCGGCAGCTGTGCGTCTTTTGGGTGGTGATGGTAGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTATGTGTGGTGGGACATTTCCCTTTGTACGTCGTCCTCTCTCTCTCTTTCTCTCTCTTCCGTATCTGGTCATATGAATAAGTGCAATAATGTGTCGTCCACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGATAGATAGATCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGCGAAAAAAAGTGATATTTACAGCCTGACAAAGAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACATGAGAGAAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAAGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTG]
[+] EMBL BM579916 [CCGTGCTGAAATGATGCCGGCAGCTGTGCGTCTTTTGGGTGGTGATGGTAGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTATGTGTGGTGGGACATTTCCCTTTGTACGTCGTCCTCTCTCTCTCTTTCTCTCTCTTCCGTATCTGGTCATATGAATAAGTGCAATAATGTGTCGTCCACACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGAGATAGATAGATCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGCGAAAAAAAGTGATATTTACAGCCTGACAAAGAACGAGAATGTCCTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACAGTGAGAACATGAGAGAAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAACTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAAGTTCACATTTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4758#0 ------------------------------------------------------------
consensus_4758#1 CCGTGCTGAAATGATGCCGGCAGCTGTGCGTCTTTTGGGTGGTGATGGTAGTGTGTGTGT 60
consensus_4758#0 ------------------------------------------------------------
consensus_4758#1 GTGTGTGTGTTTGTGTGTGTATGTGTGGTGGGACATTTCCCTTTGTACGTCGTCCTCTCT 120
consensus_4758#0 -----------------CCGCGGACGCGTGGG-GAATAAGTGCAATAATGTGTCGTCTAC 42
consensus_4758#1 CTCTCTTTCTCTCTCTTCCGTATCTGGTCATATGAATAAGTGCAATAATGTGTCGTCCAC 180
*** * ************************ **
consensus_4758#0 ACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATGAGAGA 102
consensus_4758#1 ACGGCAGCCTGCTTGGGGGAAAAAGAGGAAGCAACAGTGGCATGAATGAGGAATG----- 235
*******************************************************
consensus_4758#0 GAGAGAGAGAGAGAGAGATAGGCCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGA 162
consensus_4758#1 -------AGAGAGATAGATAGATCGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGCGA-- 286
******* ****** ******************************** **
consensus_4758#0 GAGAGAGAGAGAGAGAGAGAAAAAAGTGATATTTACAGCCTGACAAAAAACGAGAATGTC 222
consensus_4758#1 -------------------AAAAAAGTGATATTTACAGCCTGACAAAGAACGAGAATGTC 327
**************************** ************
consensus_4758#0 CTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACA 282
consensus_4758#1 CTTAGTAGAAATTGCGATCGGTGTCTGGTCGGTATTCCGAATGATTAGTAACCGAGAACA 387
************************************************************
consensus_4758#0 GTGAGAACAGAAGAGTAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAA 342
consensus_4758#1 GTGAGAACATGAGAGAAGAGCAGTCAAGCGAATGAACCAGAACTACAGAAAACTCAAGAA 447
********* **** ********************************************
consensus_4758#0 CTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAGGTTCACAT 402
consensus_4758#1 CTAGAGCGAGCGAGAGGGAACTGTGAAGACAAACGTTTAGTTGGAATTTTAAGTTCACAT 507
*************************************************** ********
consensus_4758#0 TTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTGTCATTAATTGTTTCG 462
consensus_4758#1 TTCCGTTTTCATTTCGTTTCGAGGTAAGTTTTCCCTTTTCTTTTG--------------- 552
*********************************************
consensus_4758#0 CAAGTGCTCGATCAACTACTGTCGATAGTAGTAATCACACAGAGTTCAAAGTTCAAACAC 522
consensus_4758#1 ------------------------------------------------------------
consensus_4758#0 TTTTGCACACCCGTCAACAGTTGCAGTACTGTTTGTTATCTTATTTCGCTCTTTAATTGA 582
consensus_4758#1 ------------------------------------------------------------
consensus_4758#0 ATTATGGACCGATGATACATCACCATCGACGGATTAGGCTGTTGTTGATTCACCGAGAGC 642
consensus_4758#1 ------------------------------------------------------------
consensus_4758#0 ACTAAACGTTAGGGACAAACTGTACTATGGATTCCCACACTGTATAGCTGCAGTGCTCAA 702
consensus_4758#1 ------------------------------------------------------------
consensus_4758#0 TACA 706
consensus_4758#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||