These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 687 fasta sequence [CCGTCAAGGGCAGCATAACATGTTACCGCAGTAGTGCTGTGCGACGAGGACTTCATCTAAAAGCTTGCCAACCCCGACCAGCAATGAATAACATTACCGACATACACTACGGGCCACTGCCGGCGGATTCGCCCTACGTGAAGCCATTCCGCTTCCACTACACGCAGAACGGGAAGCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCGGTGTCGATCGTGATTTTTAACGTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCATCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGCTTGCCGTCACGATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAATCGCCCGCGAAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCATCGAGGAAATCATTCGCTATCGTTCGGGCGTCGGAACTTCCGGTGCCGAGCAGACGCTGTTCTACGCGGAGGTGACGGACGAGGACAAGATCGCTTCGGCCGGGGGCGGAGTGGACGACGAAATTATCGATGTCGTTGAGTACGATCTGGAGGAGGCTCGAAAGCTCACCGACAAGGGGACGGTAATAACCAGCCCGCCGTCCTTCTTGTTCGGATTGCTCT] [+] EMBL BM608758 [CCGTCAAGGGCAGCATAACATGTTACCGCAGTAGTGCTGTGCGACGAGGACTTCATCTAAAAGCTTGCCAACCCCGACCAGCAATGAATAACATTACCGACATACACTACGGGCCACTGCCGGCGGATTCGCCCTACGTGAAGCCATTCCGCTTCCACTACACGCAGAACGGGAAGCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCGGTGTCGATCGTGATTTTTAACGTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCATCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGCTTGCCGTCACGATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAATCGCCCGCGAAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCATCGAGGAAATCATTCGCTATCGTTCGGGCGTCGGAACTTCCGGTGCCGAGCAGACGCTGTTCTACGCGGAGGTGACGGACGAGGACAAGATCGCTTCGGCCGGGGGCGGAGTGGACGACGAAATTATCGATGTCGTTGAGTACGATCTGGAGGAGGCTCGAAAGCTCACCGACAAGGGGACGGTAATAACCAGCCCGCCGTCCTTCTTGTTCGGATTGCTCT] [+] EMBL BM598790 [CCG CAAGGGCAGCATAACATGTTACCGCAGTAGTGCTGTGCGACGAGGACTTCATCTAAAAGCTTGCCAACCCCGACCAGCAATGAATAACATTACCGACATACACTACGGGCCACTGCCGGCGGATTCGCCCTACGTGAAGCCGTTCCGCTTCCACTACACGCAGAACGGGAAGCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCGGTGTCGATCGTAATTTTTAACGTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCATCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGCTTGCCGTCACAATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAA ] consensusID : consensus_4759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [GAATCGCCCGAGGTTCGCAGTAGTGCTGTGCGANGAGGACTTCATCTAAAAGCTTGGCCAACCCCGACCAGCAATGAATAACATTACCGATCATACAGCTACGGGCCACTGCCGGACGGATTCGCCCTACGTGAAGCCGTTCCGCTTCCACTACACGCAGAACGGTGAAGCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCGCGATGTCGATCGTAATTATTTAACAGTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCATCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGCTTGCCGTCACAATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAATCGCCCGCGAAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCAT] [+] EMBL AL931306 [GAATCGCCCGAGGTTCGCAGTAGTGCTGTGCGANGAGGACTTCATCTAAAAGCTTGGCCAACCCCGACCAGCAATGAATAACATTACCGATCATACAGCTACGGGCCACTGCCGGACGGATTCGCCCTACGTGAAGCCGTTCCGCTTCCACTACACGCAGAACGGTGAAGCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCGCGATGTCGATCGTAATTATTTAACAGTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCATCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGCTTGCCGTCACAATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAATCGCCCGCGAAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4759#0 CCGTCAAGGGCAGCATAACATGTTACCGCAGTAGTGCTGTGCGACGAGGACTTCATCTAA 60 consensus_4759#1 ---------GAATCGCCCGAGGTT--CGCAGTAGTGCTGTGCGANGAGGACTTCATCTAA 49 * * * * *** ****************** *************** consensus_4759#0 AAGCTTG-CCAACCCCGACCAGCAATGAATAACATTACCGA-CATACA-CTACGGGCCAC 117 consensus_4759#1 AAGCTTGGCCAACCCCGACCAGCAATGAATAACATTACCGATCATACAGCTACGGGCCAC 109 ******* ********************************* ****** *********** consensus_4759#0 TGCCGG-CGGATTCGCCCTACGTGAAGCCATTCCGCTTCCACTACACGCAGAACGG-GAA 175 consensus_4759#1 TGCCGGACGGATTCGCCCTACGTGAAGCCGTTCCGCTTCCACTACACGCAGAACGGTGAA 169 ****** ********************** ************************** *** consensus_4759#0 GCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCG--GTGTCGATCGTGATT-TTTAA 232 consensus_4759#1 GCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCGCGATGTCGATCGTAATTATTTAA 229 ************************************* ********** *** ***** consensus_4759#0 C-GTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCA 291 consensus_4759#1 CAGTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCA 289 * ********************************************************** consensus_4759#0 TCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGC 351 consensus_4759#1 TCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGC 349 ************************************************************ consensus_4759#0 TTGCCGTCACGATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAA 411 consensus_4759#1 TTGCCGTCACAATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAA 409 ********** ************************************************* consensus_4759#0 TCGCCCGCGAAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCATCGAGG 471 consensus_4759#1 TCGCCCGCGAAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCAT----- 464 ******************************************************* consensus_4759#0 AAATCATTCGCTATCGTTCGGGCGTCGGAACTTCCGGTGCCGAGCAGACGCTGTTCTACG 531 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 CGGAGGTGACGGACGAGGACAAGATCGCTTCGGCCGGGGGCGGAGTGGACGACGAAATTA 591 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 TCGATGTCGTTGAGTACGATCTGGAGGAGGCTCGAAAGCTCACCGACAAGGGGACGGTAA 651 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 TAACCAGCCCGCCGTCCTTCTTGTTCGGATTGCTCT 687 consensus_4759#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||