cluster # 4778

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4778 cluster # 4778 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4778#0 length = 740 sequences # 2

consensus_4778#1 length = 648 sequences # 1

consensusID : consensus_4778#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 740
fasta sequence

                              [CCGTCCAAACAAACATGTTTATTATTGTTTCAGAATCTCTGGCTGCTGGTAGAAAGTTGTTCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTAATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTGAAGCCCAAGGATATCACGCTACCCAAGCTTGAAAAATGTTTACAATCAATACAATCCTGCCCATTTCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTTGCTGTGCAGTACTGTGCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAAAGTGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATCTTGTGCGCCAATTCACGCTCCATCTGTACCTTCCCCGTGAACTGCGTGGCGTATCCAAATGTGAAGCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACCTACTGCACGGCCCAATTTCGACGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGACGATGTCTAGCAGACACTGTGATCGATTTTTTAGCAGCCAGCTATAGCCTTGCGAAAACTACTTTAATGCAAAACAATAGCCTCCCGGCCTTTCCCAGGGAACACAT-GTTTAGAAGTTTGCTGGTGATAAAAGGCTCCCCAGGATTGCC]

[+] EMBL BM603291             [CCGTCCAAACAAACATGTTTATTATTGTTTCAGAATCTCTGGCTGCTGGTAGAAAGTTGTTCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTAATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTGAAGCCCAAGGATATCACGCTACCCAAGCTTGAAAAATGTTTACAATCAATACAATCCTGCCCATTTCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTTGCTGTGCAGTACTGTGCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAAAGTGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATCTTGTGCGCCAATTCACGCTCCATCTGTACCTTCCCCGTGAACTGCGTGGCGTATCCAAATGTGAAGCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACCTACTGCACGGCCCAATTTCGACGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGACGATGTCTAGCAGACACTGTGATCGATTTTTTAGCAGCCAGCTATAGCCTTGCGAAAACTACTTTAATGCAAAACAATAGCCTCCCGGCCTTTCCCAGGGAACACAT GTTTAGAAGTTTGC                            ]
[+] EMBL BM594173             [                                                   ccggGTTGTTCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTAATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTGAAGCCCAAGGATATCACGCTTCCCAAGCTTGAAGAATGTTTACAATCAATACAATCCAGCCCATTGCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTCGCTGTGCAGTACTGTGCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAAAGCGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATATTGTGCGCCAATTCACGCTCCATCTGTACCTGCCCCGTGAACTGCGTGGCGTATCGAAATGTGAAGCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACGTACTGCACGGCCCAATTTCGTCGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGA      CTAGCAGACACTGTGATCGATTTCTTAGCAGCCAGCTATAGTCTCGCAAAAACCACTTTGATGCAAAACAATAGCCTCCCGGCCTTTCCCAGGG ACCCATGGTTTAGAAGTTTGCTGGTGATAAAAGGCTCCCCAGGATTGCC]




>consensus_4778#0
CCGTCCAAACAAACATGTTTATTATTGTTTCAGAATCTCTGGCTGCTGGTAGAAAGTTGT
TCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTA
ATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTG
AAGCCCAAGGATATCACGCTACCCAAGCTTGAAAAATGTTTACAATCAATACAATCCTGC
CCATTTCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTTGCTGTGCAGTACTGT
GCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAA
AGTGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATCTTGTG
CGCCAATTCACGCTCCATCTGTACCTTCCCCGTGAACTGCGTGGCGTATCCAAATGTGAA
GCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACCTACTGCACG
GCCCAATTTCGACGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGACGATGTCTA
GCAGACACTGTGATCGATTTTTTAGCAGCCAGCTATAGCCTTGCGAAAACTACTTTAATG
CAAAACAATAGCCTCCCGGCCTTTCCCAGGGAACACATGTTTAGAAGTTTGCTGGTGATA
AAAGGCTCCCCAGGATTGCC

consensusID : consensus_4778#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTAATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTGAAGCCCAAGGATATCACGCTTCCCAAGCTTGAAGAATGTTTACAATCAATACAATCCAGCCCATTGCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTCGCTGTGCAGTACTGTGCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAAAGCGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATATTGTGCGCCAATTCACGCTCCATCTGTACCTGCCCCGTGAACTGCGTGGCGTATCGAAATGTGAAGCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACGTACTGCACGGCCCAATTTCGTCGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGACTAGCAGACACTGTGATCGATTTCTTAGCAGCCAGCTATAGTCTCGCAAAAACCACTTTGATGCAAAACAATAGCCTCCCGGCCTTTC]

[+] EMBL BM632998             [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTAATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTGAAGCCCAAGGATATCACGCTTCCCAAGCTTGAAGAATGTTTACAATCAATACAATCCAGCCCATTGCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTCGCTGTGCAGTACTGTGCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAAAGCGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATATTGTGCGCCAATTCACGCTCCATCTGTACCTGCCCCGTGAACTGCGTGGCGTATCGAAATGTGAAGCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACGTACTGCACGGCCCAATTTCGTCGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGACTAGCAGACACTGTGATCGATTTCTTAGCAGCCAGCTATAGTCTCGCAAAAACCACTTTGATGCAAAACAATAGCCTCCCGGCCTTTC]




>consensus_4778#1
CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCTCCGCTTGTTAGAATTACGAATACAATA
GGAGTTTATTGCCTAAGGCACGTGGAGTAATTGTTATTGGAATGGAGATTAAAGCGCTTC
GCGACGTGATAACAAGCACGGCCAATTTGAAGCCCAAGGATATCACGCTTCCCAAGCTTG
AAGAATGTTTACAATCAATACAATCCAGCCCATTGCCTACGGAAGAGCCAAGCACCGATA
TACTGTGGAAAGTCGCTGTGCAGTACTGTGCCGTACTGACGGAATTTGCAGTCCAAGGGC
TGGTGGAGAAGCAAAACCCAACGGCCGAAAGCGACGAAGTGATAAACTTACACGATCAGG
CACAATACCTTACCACGATCGATATTGTGCGCCAATTCACGCTCCATCTGTACCTGCCCC
GTGAACTGCGTGGCGTATCGAAATGTGAAGCCCAGCTGATGGTGAAGCTAGAAGAGCAGG
AACGTGTGCGAAGGCTCACGTACTGCACGGCCCAATTTCGTCGGGTGTTTGAAACGAAAC
TGTTAGCTCTTCATCCACGACTAGCAGACACTGTGATCGATTTCTTAGCAGCCAGCTATA
GTCTCGCAAAAACCACTTTGATGCAAAACAATAGCCTCCCGGCCTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4778#0      CCGTCCAAACAAACATGTTTATTATTGTTTCAGAATCTCTGGCTGCTGGTAGAAAGTTGT 60
consensus_4778#1      ------------------------------CCGCCCACGCGTCCGCCCAC-GCGTCCGGT 29
                                                    * *       * * **     *      **

consensus_4778#0      TCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTA 120
consensus_4778#1      TCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTA 89
                      ************************************************************

consensus_4778#0      ATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTG 180
consensus_4778#1      ATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTG 149
                      ************************************************************

consensus_4778#0      AAGCCCAAGGATATCACGCTACCCAAGCTTGAAAAATGTTTACAATCAATACAATCCTGC 240
consensus_4778#1      AAGCCCAAGGATATCACGCTTCCCAAGCTTGAAGAATGTTTACAATCAATACAATCCAGC 209
                      ******************** ************ *********************** **

consensus_4778#0      CCATTTCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTTGCTGTGCAGTACTGT 300
consensus_4778#1      CCATTGCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTCGCTGTGCAGTACTGT 269
                      ***** ************************************** ***************

consensus_4778#0      GCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAA 360
consensus_4778#1      GCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAA 329
                      ************************************************************

consensus_4778#0      AGTGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATCTTGTG 420
consensus_4778#1      AGCGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATATTGTG 389
                      ** *************************************************** *****

consensus_4778#0      CGCCAATTCACGCTCCATCTGTACCTTCCCCGTGAACTGCGTGGCGTATCCAAATGTGAA 480
consensus_4778#1      CGCCAATTCACGCTCCATCTGTACCTGCCCCGTGAACTGCGTGGCGTATCGAAATGTGAA 449
                      ************************** *********************** *********

consensus_4778#0      GCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACCTACTGCACG 540
consensus_4778#1      GCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACGTACTGCACG 509
                      ************************************************** *********

consensus_4778#0      GCCCAATTTCGACGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGACGATGTCTA 600
consensus_4778#1      GCCCAATTTCGTCGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGAC------TA 563
                      *********** ****************************************      **

consensus_4778#0      GCAGACACTGTGATCGATTTTTTAGCAGCCAGCTATAGCCTTGCGAAAACTACTTTAATG 660
consensus_4778#1      GCAGACACTGTGATCGATTTCTTAGCAGCCAGCTATAGTCTCGCAAAAACCACTTTGATG 623
                      ******************** ***************** ** ** ***** ***** ***

consensus_4778#0      CAAAACAATAGCCTCCCGGCCTTTCCCAGGGAACACATGTTTAGAAGTTTGCTGGTGATA 720
consensus_4778#1      CAAAACAATAGCCTCCCGGCCTTTC----------------------------------- 648
                      *************************                                   

consensus_4778#0      AAAGGCTCCCCAGGATTGCC 740
consensus_4778#1      --------------------