cluster # 4790

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Anopheles gambiae
cluster # 4790 cluster # 4790 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4790#0 length = 642 sequences # 2

consensus_4790#1 length = 633 sequences # 1

consensusID : consensus_4790#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 642
fasta sequence

                              [CCGCCCACGCGTCCGAAACGTTTCAGCGGGCAACAGCAGCTTCAAAGCGCTTCGAAAAGTGCAGGCTGTGCAGGGCCAATCATTCATCTGAAGCAACGGCAATTCCGCGGCAAAGATCAAGTTCACCTCCCCGTCCGAAAATAGTCAAACTCAACTTGACCGGCCAACGCGAAAGCTGCAGTTTAGTGTGTCAAAAGTGTATTTTTCCGGGTCGTCTAGCTTTTTACCCGCAATTAATCAACTCCCCCGGCAGTGGAAAGTTTATCCAGCGTGAATTTTTGCATCTTTGAGAAGAAAGGTCGAGTCTAAAGTTTTGCAAAATGTTGGCCGCAACTACACTGTTCAAGATGCTGCTGGTGACCTCGATACTGTCGCAAGCGGTCCACTGTCAGCGGTTGCTGGGGCGGAGTCGCCGGGAAGCGACGAACACACCGTTGTCGTCCACCGATGCGCCGGTTGAGGTAAGTGAAGCTGTCGACAAACAATCGGCCACCGGGGAGGTGTTGAGTACGGCCGCATCGACAAGGACACAGCGCAGCTACTACGGCGGTGGCTCGAGTGAAAGATTGTTCGATCTGGGCGGGCTGCTGGGAAGCCGCACGTACTACTCGGGTAATCGGGGCTATTATCCGTCCGGTGGGT]

[+] EMBL BM635844             [CCGCCCACGCGTCCGAAACGTTTCAGCGGGCAACAGCAGCTTCAAAGCGCTTCGAAAAGTGCAGGCTGTGCAGGGCCAATCATTCATCTGAAGCAACGGCAATTCCGCGGCAAAGATCAAGTTCACCTCCCCGTCCGAAAATAGTCAAACTCAACTTGACCGGCCAACGCGAAAGCTGCAGTTTAGTGTGTCAAAAGTGTATTTTTCCGGGTCGTCTAGCTTTTTACCCGCAATTAATCAACTCCCCCGGCAGTGGAAAGTTTATCCAGCGTGAATTTTTGCATCTTTGAGAAGAAAGGTCGAGTCTAAAGTTTTGCAAAATGTTGGCCGCAACTACACTGTTCAAGATGCTGCTGGTGACCTCGATACTGTCGCAAGCGGTCCACTGTCAGCGGTTGCTGGGGCGGAGTCGCCGGGAAGCGACGAACACACCGTTGTCGTCCACCGATGCGCCGGTTGAGGTAAGTGAAGCTGTCGACAAACAATCGGCCACCGGGGAGGTGTTGAGTACGGCCGCATCGACAAGGACACAGCGCAGCTACTACGGCGGTGGCTCGAGTGAAAGATTGTTCGATCTGGGCGGGCTGCTGGGAAGCCGCACGTACTACTCGGGTAATCGGGGCTATTATCCGTCCGGTGGGT]
[+] EMBL BM638934             [                ccgGTTTCAGCGGGCAACAGCAGCTTCAAAGCGCTTCGAAAAGTGCAGGCTGTGCAGGGCCAATCATTCATCTGAAGCAACGGCAATTCCGCGGCAAAGATCAAGTTCACCTCCCCGTCCGAAAATAGTCAAACTCAACTTGACCGGCCAACGCGAAAGCTGCAGTTTAGTGTGTCAAAAGTGTATTTTTCCGGGTCGTCTAGCTTTTTACCCGCAATTAATCAACTCCCCCGGCAGTGGAAAGTTTATCCAGCGTGAATTTTTGCATCTTTGAGAAGAAAGGTCGAGTCTAAAGTTTTGCAAAATGTTGGCCGCAACTACACTGTTCAAGATGCTGCTGGTGACCTCGATACTGTCGCAAGCGGTCCACTGTCAGCGGTTGCTGGGGCGGAGTCGCCGGGAAGCGACGAACACACCGTTGTCGTCCACCGATGCGCCGGTTGAGGTAAGTGAAGCTGTCGACAAACAATCGGCCACCGGGGAGGTGTTGAGTACGGCCGCATCGACAAGGACACAGCGCAGCTACTACGGCGGTGGCTCGAGTGAAAGATTGTTCGATCTGGGCGGGCTGCTGG                                                   ]




>consensus_4790#0
CCGCCCACGCGTCCGAAACGTTTCAGCGGGCAACAGCAGCTTCAAAGCGCTTCGAAAAGT
GCAGGCTGTGCAGGGCCAATCATTCATCTGAAGCAACGGCAATTCCGCGGCAAAGATCAA
GTTCACCTCCCCGTCCGAAAATAGTCAAACTCAACTTGACCGGCCAACGCGAAAGCTGCA
GTTTAGTGTGTCAAAAGTGTATTTTTCCGGGTCGTCTAGCTTTTTACCCGCAATTAATCA
ACTCCCCCGGCAGTGGAAAGTTTATCCAGCGTGAATTTTTGCATCTTTGAGAAGAAAGGT
CGAGTCTAAAGTTTTGCAAAATGTTGGCCGCAACTACACTGTTCAAGATGCTGCTGGTGA
CCTCGATACTGTCGCAAGCGGTCCACTGTCAGCGGTTGCTGGGGCGGAGTCGCCGGGAAG
CGACGAACACACCGTTGTCGTCCACCGATGCGCCGGTTGAGGTAAGTGAAGCTGTCGACA
AACAATCGGCCACCGGGGAGGTGTTGAGTACGGCCGCATCGACAAGGACACAGCGCAGCT
ACTACGGCGGTGGCTCGAGTGAAAGATTGTTCGATCTGGGCGGGCTGCTGGGAAGCCGCA
CGTACTACTCGGGTAATCGGGGCTATTATCCGTCCGGTGGGT

consensusID : consensus_4790#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [GGCAGAATCGCCCGAGGNTATNTCACGCGGGCACAGCAGCTTCAAAGCGCTTCGAAAAGTGCACGGCTGTGCAGTGGCCAATCATTCATCTGAAGCAACGGCAATTCCGTGGCAAAGATCAAGTTCACCTCCCCGTTCGAACAATAGTCAAACTCAACTTGACCCGGCCAACGCGAAAGCTGCAGCTCTAGTGTGTCAACAAGTGTATTTTTACCGGGTCGCTCTAGGCTTTTTTCCCGCAATTAATCAACTCCCCCGTGCCCTAGCTTGNGACANACGCTTTATTCCCCAAGGCCGTTGCAAAATTTATCATATGCGGGNCGANTTACCTTATTTANGGCAAAGNGAATAACGGTCAACACNAAAGGCAGGGTTACCGCAAGGTTTCCCTTCACNANACAACGGGGCGTTNTCTTCAGTACGTANGGGCNGNAACAAAAGAAAGGTAAGCTTGGGGCGATACACTGGACGGGTACCGCCCTGGAGCCGNCAGCAACGACCGAGTTTAAAGCCAACGCCACTTAGGGNGTAATTTCCCAAACAAGGGGCTAACGTTGGCCCNTTNGNGCCGAGTTGTGGGAGTTTGCAAAGCCCATTCCNGGACANGCGATTANTCCGTTTGGCAGTTCNGGC]

[+] EMBL AL933661             [GGCAGAATCGCCCGAGGNTATNTCACGCGGGCACAGCAGCTTCAAAGCGCTTCGAAAAGTGCACGGCTGTGCAGTGGCCAATCATTCATCTGAAGCAACGGCAATTCCGTGGCAAAGATCAAGTTCACCTCCCCGTTCGAACAATAGTCAAACTCAACTTGACCCGGCCAACGCGAAAGCTGCAGCTCTAGTGTGTCAACAAGTGTATTTTTACCGGGTCGCTCTAGGCTTTTTTCCCGCAATTAATCAACTCCCCCGTGCCCTAGCTTGNGACANACGCTTTATTCCCCAAGGCCGTTGCAAAATTTATCATATGCGGGNCGANTTACCTTATTTANGGCAAAGNGAATAACGGTCAACACNAAAGGCAGGGTTACCGCAAGGTTTCCCTTCACNANACAACGGGGCGTTNTCTTCAGTACGTANGGGCNGNAACAAAAGAAAGGTAAGCTTGGGGCGATACACTGGACGGGTACCGCCCTGGAGCCGNCAGCAACGACCGAGTTTAAAGCCAACGCCACTTAGGGNGTAATTTCCCAAACAAGGGGCTAACGTTGGCCCNTTNGNGCCGAGTTGTGGGAGTTTGCAAAGCCCATTCCNGGACANGCGATTANTCCGTTTGGCAGTTCNGGC]




>consensus_4790#1
GGCAGAATCGCCCGAGGNTATNTCACGCGGGCACAGCAGCTTCAAAGCGCTTCGAAAAGT
GCACGGCTGTGCAGTGGCCAATCATTCATCTGAAGCAACGGCAATTCCGTGGCAAAGATC
AAGTTCACCTCCCCGTTCGAACAATAGTCAAACTCAACTTGACCCGGCCAACGCGAAAGC
TGCAGCTCTAGTGTGTCAACAAGTGTATTTTTACCGGGTCGCTCTAGGCTTTTTTCCCGC
AATTAATCAACTCCCCCGTGCCCTAGCTTGNGACANACGCTTTATTCCCCAAGGCCGTTG
CAAAATTTATCATATGCGGGNCGANTTACCTTATTTANGGCAAAGNGAATAACGGTCAAC
ACNAAAGGCAGGGTTACCGCAAGGTTTCCCTTCACNANACAACGGGGCGTTNTCTTCAGT
ACGTANGGGCNGNAACAAAAGAAAGGTAAGCTTGGGGCGATACACTGGACGGGTACCGCC
CTGGAGCCGNCAGCAACGACCGAGTTTAAAGCCAACGCCACTTAGGGNGTAATTTCCCAA
ACAAGGGGCTAACGTTGGCCCNTTNGNGCCGAGTTGTGGGAGTTTGCAAAGCCCATTCCN
GGACANGCGATTANTCCGTTTGGCAGTTCNGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4790#0      CCGCCCACGCGTCCGAAAC-GTTTCA-GCGGGCAACAGCAGCTTCAAAGCGCTTCGAAAA 58
consensus_4790#1      -GGCAGAATCGCCCGAGGNTATNTCACGCGGGCA-CAGCAGCTTCAAAGCGCTTCGAAAA 58
                        **  *  ** ****     * *** ******* *************************

consensus_4790#0      GTGCA-GGCTGTGCAG-GGCCAATCATTCATCTGAAGCAACGGCAATTCCGCGGCAAAGA 116
consensus_4790#1      GTGCACGGCTGTGCAGTGGCCAATCATTCATCTGAAGCAACGGCAATTCCGTGGCAAAGA 118
                      ***** ********** ********************************** ********

consensus_4790#0      TCAAGTTCACCTCCCCGTCCGAA-AATAGTCAAACTCAACTTGACC-GGCCAACGCGAAA 174
consensus_4790#1      TCAAGTTCACCTCCCCGTTCGAACAATAGTCAAACTCAACTTGACCCGGCCAACGCGAAA 178
                      ****************** **** ********************** *************

consensus_4790#0      GCTGCAGTT-TAGTGTGTCAA-AAGTGTATTTTT-CCGGGTCG-TCTAG-CTTTTTACCC 229
consensus_4790#1      GCTGCAGCTCTAGTGTGTCAACAAGTGTATTTTTACCGGGTCGCTCTAGGCTTTTTTCCC 238
                      ******* * *********** ************ ******** ***** ****** ***

consensus_4790#0      GCAATTAATCAACTCCCCCGGCAGTGGAAAGTTTATCCAGCGTGAATTTTTGCATCTTTG 289
consensus_4790#1      GCAATTAATCAACTCCCCCGT--------GCCCTAGCTTGNGACANACGCTTTATTCCCC 290
                      ********************             ** *  * *  *     *  **     

consensus_4790#0      AGAAGAAAGGTCGAGTCTAAAGTTTTGCAAAATGTTGGCCGCAACTACACTGTTCAAGAT 349
consensus_4790#1      A------AGGCCGTTGCAAAA--TTTATCATATGCGGGNCG-ANTTACCTTATTTANGGC 341
                      *      *** **   * ***  ***   * ***  ** ** *  ***  * ** * *  

consensus_4790#0      GCTGCTGGTGACC-TCGATACTGTCGCAAGCGGTCCACTGTCAGCGGTTGCTGGGGCGGA 408
consensus_4790#1      AAAGNGAATAACGGTCAACACNAAAGGCAGGGTT--ACCGCAAG--GTTTCC-------- 389
                         *    * **  ** * **    *  ** * *  ** *  **  *** *         

consensus_4790#0      GTCGCCGGGAAGCGACGAACACACCGTTGTC-GTCCACCGATGCGCCGGTTGAGGTAAGT 467
consensus_4790#1      --CTTCACNANACAACGGG-GCGTTNTCTTCAGTACGTANGGGCNGNAACAAAAGAAAGG 446
                        *  *   *  * ***    *    *  ** ** *      **        * * *** 

consensus_4790#0      GAAGCTGTCGACAAACAATCGGCCACCGGGGAGGTGTTGAGTACGGCCGCATCGAC-AAG 526
consensus_4790#1      TAAGCTTGGGGCGATACACTGG--ACGGGTACCGCCCTGGAGCCGNCAGCAACGACCGAG 504
                       *****   * * *   *  **  ** **    *   **    ** * *** ****  **

consensus_4790#0      GACACAGCGCA-GCTACTACGGCGGTGGCT---CGAGTGAAAGA------TTGTTCGATC 576
consensus_4790#1      TTTAAAGCCAACGCCACTTAGGGNGTAATTTCCCAAACAAGGGGCTAACGTTGGCCCNTT 564
                         * ***  * ** ***  **  **   *   * *   *  *       ***  *  * 

consensus_4790#0      TGGGCGGGCTGCTGGGAAGCCGCACGTACTACTCGGGTAATCGGGGCTATTATCCGTCCG 636
consensus_4790#1      NGNGCCGAGTTGTGGGAGTTTGCAAAGCCCATTCCNGGACANGCGATTAN--TCCGTTTG 622
                       * ** *  *  *****    ***    * * **  * *   * *  **   *****  *

consensus_4790#0      GTGGGT----- 642
consensus_4790#1      GCAGTTCNGGC 633
                      *  * *