cluster # 4809

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Anopheles gambiae
cluster # 4809 cluster # 4809 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4809#0 length = 663 sequences # 2

consensus_4809#1 length = 159 sequences # 1

consensusID : consensus_4809#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 663
fasta sequence

                              [TTCGCTATGTCATTTTGCTTCCTCTGCTTCTAATCTGTAGCGGCAGTTTGGGGGACCCGGTTTTCGTTGCAAAAATGATACACACGGTGTACGAAACGGGCAAACCTGGTTGGATGGAAGAACACGGTTGGACAGCGAACCTGCGGCGTTGATTCCAATTATGACGCGATGAACTTATATAATTATGCAAATTAGCTCGCTTCTCCACCTTTCTTTCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGTCGCGCGGGATAAAGAAAGAGAGAGAGAGAGAGAAAAAGGGAGGGCATACAAAACGTAATCTTGTGATTTTGGATAACCAACCGTTTTCGGACGATGTGCGTCCAGGCGTTGTGGTTCGATCTTCTTCTAGTTGACCTATATATTTTCGTTCGAGAAGCGACGTTTCCTGTTGCCCTGCTGCTGCTGCTGATGCTGTTGCTGATCCCTGAAGGGAATCCGGCTGGGCGAACAACGTCGTAGATTCTGTCCGTTGGGAGAATTGTATGCCTTGGTTTTTTGGGGGGATCGGTAGATTGTGACCTAAATCATGTCATGCCAGCTCGGGGGATGGGCGGATGCTTTTGTTCTTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATTAAA]

[+] EMBL BX615031             [TTCGCTATGTCATTTTGCTTCCTCTGCTTCTAATCTGTAGCGGCAGTTTGGGGGACCCGGTTTTCGTTGCAAAAATGATACACACGGTGTACGAAACGGGCAAACCTGGTTGGATGGAAGAACACGGTTGGACAGCGAACCTGCGGCGTTGATTCCAATTATGACGCGATGAACTTATATAATTATGCAAATTAGCTCGCTTCTCCACCTTTCTTTCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGTCGCGCGGGATAAAGAAAGAGAGAGAGAGAGAGAAAAAGGGAGGGCATACAAAACGTAATCTTGTGATTTTGGATAACCAACCGTTTTCGGACGATGTGCGTCCAGGCGTTGTGGTTCGATCTTCTTCTAGTTGACCTATATATTTTCGTTCGAGAAGCGACGTTTCCTGTTGCCCTGCTGCTGCTGCTGATGCTGTTGCTGATCCCTGAAGGGAATCCGGCTGGGCGAACAACGTCGTAGATTCTGTCCGTTGGGAGAATTGTATGCCTTGGTTTTTTGGGGGGATCGGTAGATTGTGACCTAAATCATGTCATGCCAGCTCGGGGGATGGGCGGATGCTTTTGTTCTTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATTAAA]
[+] EMBL CNS0953U             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGATGGGCGGATGCTTTTCTTCTTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATTAA ]




>consensus_4809#0
TTCGCTATGTCATTTTGCTTCCTCTGCTTCTAATCTGTAGCGGCAGTTTGGGGGACCCGG
TTTTCGTTGCAAAAATGATACACACGGTGTACGAAACGGGCAAACCTGGTTGGATGGAAG
AACACGGTTGGACAGCGAACCTGCGGCGTTGATTCCAATTATGACGCGATGAACTTATAT
AATTATGCAAATTAGCTCGCTTCTCCACCTTTCTTTCTAGACGGAATCCCGAAAGACCAG
AACGAAGGGGAGTCGCGCGGGATAAAGAAAGAGAGAGAGAGAGAGAAAAAGGGAGGGCAT
ACAAAACGTAATCTTGTGATTTTGGATAACCAACCGTTTTCGGACGATGTGCGTCCAGGC
GTTGTGGTTCGATCTTCTTCTAGTTGACCTATATATTTTCGTTCGAGAAGCGACGTTTCC
TGTTGCCCTGCTGCTGCTGCTGATGCTGTTGCTGATCCCTGAAGGGAATCCGGCTGGGCG
AACAACGTCGTAGATTCTGTCCGTTGGGAGAATTGTATGCCTTGGTTTTTTGGGGGGATC
GGTAGATTGTGACCTAAATCATGTCATGCCAGCTCGGGGGATGGGCGGATGCTTTTGTTC
TTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATT
AAA

consensusID : consensus_4809#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence

                              [AGCACGCTTCTCCACCGGTCTATCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGTAGCGAGGGATAAAGAAAGAGAGATAGAGAAAGGGAGGGCAAACAAAACGAAATCTTGGGAGTGGGGAAAACCAACCGGTGTCGGACGATGTGCGTCCAG]

[-] EMBL CNS0953V             [AGCACGCTTCTCCACCGGTCTATCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGTAGCGAGGGATAAAGAAAGAGAGATAGAGAAAGGGAGGGCAAACAAAACGAAATCTTGGGAGTGGGGAAAACCAACCGGTGTCGGACGATGTGCGTCCAG]




>consensus_4809#1
AGCACGCTTCTCCACCGGTCTATCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGT
AGCGAGGGATAAAGAAAGAGAGATAGAGAAAGGGAGGGCAAACAAAACGAAATCTTGGGA
GTGGGGAAAACCAACCGGTGTCGGACGATGTGCGTCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4809#0      TTCGCTATGTCATTTTGCTTCCTCTGCTTCTAATCTGTAGCGGCAGTTTGGGGGACCCGG 60
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      TTTTCGTTGCAAAAATGATACACACGGTGTACGAAACGGGCAAACCTGGTTGGATGGAAG 120
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      AACACGGTTGGACAGCGAACCTGCGGCGTTGATTCCAATTATGACGCGATGAACTTATAT 180
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      AATTATGCAAATTAGCTCGCTTCTCCACCTTTCTTTCTAGACGGAATCCCGAAAGACCAG 240
consensus_4809#1      -------------AGCACGCTTCTCCACCGGTCTATCTAGACGGAATCCCGAAAGACCAG 47
                                   *** ************  *** *************************

consensus_4809#0      AACGAAGGGGAGTCGCGCGGGATAAAGAAAGAGAGAGAGAGAGAGAAAAAGGGAGGGCAT 300
consensus_4809#1      AACGAAGGGGAGTAGCGAGGGATAAAGAAAGAGAGATAGAGA------AAGGGAGGGCAA 101
                      ************* *** ****************** *****      *********** 

consensus_4809#0      ACAAAACGTAATCTTGTGATTTTGGATAACCAACCGTTTTCGGACGATGTGCGTCCAGGC 360
consensus_4809#1      ACAAAACGAAATCTTGGGAGTGGGGAAAACCAACCGGTGTCGGACGATGTGCGTCCAG-- 159
                      ******** ******* ** *  *** ********* * *******************  

consensus_4809#0      GTTGTGGTTCGATCTTCTTCTAGTTGACCTATATATTTTCGTTCGAGAAGCGACGTTTCC 420
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      TGTTGCCCTGCTGCTGCTGCTGATGCTGTTGCTGATCCCTGAAGGGAATCCGGCTGGGCG 480
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      AACAACGTCGTAGATTCTGTCCGTTGGGAGAATTGTATGCCTTGGTTTTTTGGGGGGATC 540
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      GGTAGATTGTGACCTAAATCATGTCATGCCAGCTCGGGGGATGGGCGGATGCTTTTGTTC 600
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      TTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATT 660
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      AAA 663
consensus_4809#1      ---