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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4813#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1144 fasta sequence
[CCGGTCGGGCTCGTCGGCCCAAAACAAAGCGGCCCGTGGAAAGAAAAAAAGTAGGCTAAATTTTGCGGTTTTATCTCCACTCACTATCGGGGCTGTTGTCTTTACATCCAAAGCATATAAATACACGCAACATTACCACCAGCAAGTGCGCCATATGTTGAAAAGGTACACGCTTTACTTGCAAACAAACGGCAATCTAATGCAGCAATAGTGTATGTTCATGTATGTGTACGTGTAGGTTCGTGGCAGATCCCGACTCCGGTTGACGTCGCACCAGTAGCACCAGCGGGCTTATTCGATGTGGTGCTGGCGCTTGGTTTGGCAACACCGGGGGCAGCATGAAACTGCAGCTGACCATGGGCCGCAGTCAGAGTCCGGCGATGGACAAGGATTCGGAGGTGGCGAAAGGGGCCGGCGGCGCGTACGAGGCCGCGTCCGTGAGCGGGCCGGAGGACGACTTCGAGCTGTGGGACCAGAGCAAGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCATTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATGGATCACAGTGAGCGGGCGGGCGAGACCGGCGAGCCGGCCCGGGCCGGTGTGGGCCGGCTGGGGCACCCGATCGCCTGCCCGGAGACGTGCTCGCTCGAGCTGGTCGAAAGCATCCCGGAGGGTATGGCGTACCCGGACGGCAGCCCCACCTTCCGCACCACCTTCCAGGCGTGGTCGGCGCTGCTCGAGCTGGCCCAGGCGACGGTCGAGATTGGCTCGTTCTACTGGACGCTCAAGGGTGCGGACGTGTACAACCACTCGTCCGCCCGGGAGGGCGAGACGATCTTTCGCAAGCTGTACGAGGCGGGCACGGTGCGCAAGCTGCAGGTGAAAATTGCCCAGAGCGCACCGACGTCGGCGTCGCCCAACCTGGACACGGATCTGCTGGCGAAGCAGGGGGCCGCCCTGGTCCGGTCGGTCGACTTTCCGCGGCTGGTCGGGGGCGGCGTGCTGCACACGAAGGTGTGGCTGATCGACCGGAACCACTTCTATCTGGGCAGCGCCAACATGGACTGGCGGTCGCTGACGCAGGTGAAGGAGCTGGGCGT]
[+] EMBL BM576917 [CCGGTCGGGCTCGTCGGCCCAAAACAAAGCGGCCCGTGGAAAGAAAAAAAGTAGGCTAAATTTTGCGGTTTTATCTCCACTCACTATCGGGGCTGTTGTCTTTACATCCAAAGCATATAAATACACGCAACATTACCACCAGCAAGTGCGCCATATGTTGAAAAGGTACACGCTTTACTTGCAAACAAACGGCAATCTAATGCAGCAATAGTGTATGTTCATGTATGTGTACGTGTAGGTTCGTGGCAGATCCCGACTCCGGTTGACGTCGCACCAGTAGCACCAGCGGGCTTATTCGATGTGGTGCTGGCGCTTGGTTTGGCAACACCGGGGGCAGCATGAAACTGCAGCTGACCATGGGCCGCAGTCAGAGTCCGGCGATGGACAAGGATTCGGAGGTGGCGAAAGGGGCCGGCGGCGCGTACGAGGCCGCGTCCGTGAGCGGGCCGGAGGACGACTTCGAGCTGTGGGACCAGAGCAAGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCATTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATG ]
[+] EMBL BM600244 [ ccGGACCAGAGCAAGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCATTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATGGATCACAGTGAGCGGGCGGGCGAGACCGGCGAGCCGGCCCGGGCCGGTGTGGGCCGGCTGGGGCACCCGATCGCCTGCCCGGAGACGTGCTCGCTCGAGCTGGTCGAAAGCATCCCGGAGGGTATGGCGTACCCGGACGGCAGCCCCACCTTCCGCACCACCTTCCAGGCGTGGTCGGCGCTGCTCGAGCTGGCCCAGGCGACGGTCGAGATTGGCTCGTTCTACTGGACGCTCAAGGGTGCGGACGTGTACAACCACTCGTCCGCCCGGGAGGGCGAGACGATCTTTCGCAAGCTGTACGAGGCGGGCACGGTGCGCAAGCTGCAGGTGAAAATTGCCCAGAGCGCACCGACGTCGGCGTCGCCCAACCTGGACACGGATCTGCTGGCGAAGCAGGGGGCCGCCCTGGTCCGGTCGGTCGACTTTCCGCGGCTGGTCGGGGGCGGCGTGCTGCACACGAAGGTGTGGCTGATCGACCGGAACCACTTCTATCTGGGCAGCGCCAACATGGACTGGCGGTCGCTGACGCAGGTGAAGGAGCTGGGCGT]
consensusID : consensus_4813#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[CCGCGGGCTCGTCGGCCCAAAACAAAGCGGCCCGTGGGAAGAAAAAAAGTAGGCTAAATTTTGCGGTTTTATCTCCAATTTCTATCGGGGCTGTTGTCTTTACATCCAAAGCATATAAATACACGCAACATTACCACCAGCAAGTGCGCCATATGTTGAAAAGGTTCGTGGCAGATCCCGACTCCGGTTGACGTCGCACCAGTAGCACCAGCGGGCTTATTCGTTGTGGTGCTGGCGCTTGGTTTGGCAACACCGGGGGCAGCATGAAACTGCAGCTGACCATGGGCCGCAGTCAGAGTCCGGCGATGGACAAGGATTCGGAGGTGGCGAAAGGGGTCGGCGGCGTGTACGAGGCCGCGTCCGTGAGCGGGCCGGAGGACGACTTCGAGCTGTGGGACCAGAGCAAGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCATTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATGGACCACAGTGAGCGGGCGGGCGAGACCGGCGAGCCGGCCCGGGGCCGGTGTGGG]
[+] EMBL BM653233 [CCGCGGGCTCGTCGGCCCAAAACAAAGCGGCCCGTGGGAAGAAAAAAAGTAGGCTAAATTTTGCGGTTTTATCTCCAATTTCTATCGGGGCTGTTGTCTTTACATCCAAAGCATATAAATACACGCAACATTACCACCAGCAAGTGCGCCATATGTTGAAAAGGTTCGTGGCAGATCCCGACTCCGGTTGACGTCGCACCAGTAGCACCAGCGGGCTTATTCGTTGTGGTGCTGGCGCTTGGTTTGGCAACACCGGGGGCAGCATGAAACTGCAGCTGACCATGGGCCGCAGTCAGAGTCCGGCGATGGACAAGGATTCGGAGGTGGCGAAAGGGGTCGGCGGCGTGTACGAGGCCGCGTCCGTGAGCGGGCCGGAGGACGACTTCGAGCTGTGGGACCAGAGCAAGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCATTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATGGACCACAGTGAGCGGGCGGGCGAGACCGGCGAGCCGGCCCGGGGCCGGTGTGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4813#0 CCGGTCGGGCTCGTCGGCCCAAAACAAAGCGGCCCGTGGAAAGAAAAAAAGTAGGCTAAA 60
consensus_4813#1 CCG--CGGGCTCGTCGGCCCAAAACAAAGCGGCCCGTGGGAAGAAAAAAAGTAGGCTAAA 58
*** ********************************** ********************
consensus_4813#0 TTTTGCGGTTTTATCTCCACTCACTATCGGGGCTGTTGTCTTTACATCCAAAGCATATAA 120
consensus_4813#1 TTTTGCGGTTTTATCTCCAATTTCTATCGGGGCTGTTGTCTTTACATCCAAAGCATATAA 118
******************* * *************************************
consensus_4813#0 ATACACGCAACATTACCACCAGCAAGTGCGCCATATGTTGAAAAGGTACACGCTTTACTT 180
consensus_4813#1 ATACACGCAACATTACCACCAGCAAGTGCGCCATATGTTGAAAAGGT------------- 165
***********************************************
consensus_4813#0 GCAAACAAACGGCAATCTAATGCAGCAATAGTGTATGTTCATGTATGTGTACGTGTAGGT 240
consensus_4813#1 ------------------------------------------------------------
consensus_4813#0 TCGTGGCAGATCCCGACTCCGGTTGACGTCGCACCAGTAGCACCAGCGGGCTTATTCGAT 300
consensus_4813#1 TCGTGGCAGATCCCGACTCCGGTTGACGTCGCACCAGTAGCACCAGCGGGCTTATTCGTT 225
********************************************************** *
consensus_4813#0 GTGGTGCTGGCGCTTGGTTTGGCAACACCGGGGGCAGCATGAAACTGCAGCTGACCATGG 360
consensus_4813#1 GTGGTGCTGGCGCTTGGTTTGGCAACACCGGGGGCAGCATGAAACTGCAGCTGACCATGG 285
************************************************************
consensus_4813#0 GCCGCAGTCAGAGTCCGGCGATGGACAAGGATTCGGAGGTGGCGAAAGGGGCCGGCGGCG 420
consensus_4813#1 GCCGCAGTCAGAGTCCGGCGATGGACAAGGATTCGGAGGTGGCGAAAGGGGTCGGCGGCG 345
*************************************************** ********
consensus_4813#0 CGTACGAGGCCGCGTCCGTGAGCGGGCCGGAGGACGACTTCGAGCTGTGGGACCAGAGCA 480
consensus_4813#1 TGTACGAGGCCGCGTCCGTGAGCGGGCCGGAGGACGACTTCGAGCTGTGGGACCAGAGCA 405
***********************************************************
consensus_4813#0 AGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCA 540
consensus_4813#1 AGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCA 465
************************************************************
consensus_4813#0 TTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATGGATC 600
consensus_4813#1 TTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATGGACC 525
********************************************************** *
consensus_4813#0 ACAGTGAGCGGGCGGGCGAGACCGGCGAGCCGGCCCGGG-CCGGTGTGGGCCGGCTGGGG 659
consensus_4813#1 ACAGTGAGCGGGCGGGCGAGACCGGCGAGCCGGCCCGGGGCCGGTGTGGG---------- 575
*************************************** **********
consensus_4813#0 CACCCGATCGCCTGCCCGGAGACGTGCTCGCTCGAGCTGGTCGAAAGCATCCCGGAGGGT 719
consensus_4813#1 ------------------------------------------------------------
consensus_4813#0 ATGGCGTACCCGGACGGCAGCCCCACCTTCCGCACCACCTTCCAGGCGTGGTCGGCGCTG 779
consensus_4813#1 ------------------------------------------------------------
consensus_4813#0 CTCGAGCTGGCCCAGGCGACGGTCGAGATTGGCTCGTTCTACTGGACGCTCAAGGGTGCG 839
consensus_4813#1 ------------------------------------------------------------
consensus_4813#0 GACGTGTACAACCACTCGTCCGCCCGGGAGGGCGAGACGATCTTTCGCAAGCTGTACGAG 899
consensus_4813#1 ------------------------------------------------------------
consensus_4813#0 GCGGGCACGGTGCGCAAGCTGCAGGTGAAAATTGCCCAGAGCGCACCGACGTCGGCGTCG 959
consensus_4813#1 ------------------------------------------------------------
consensus_4813#0 CCCAACCTGGACACGGATCTGCTGGCGAAGCAGGGGGCCGCCCTGGTCCGGTCGGTCGAC 1019
consensus_4813#1 ------------------------------------------------------------
consensus_4813#0 TTTCCGCGGCTGGTCGGGGGCGGCGTGCTGCACACGAAGGTGTGGCTGATCGACCGGAAC 1079
consensus_4813#1 ------------------------------------------------------------
consensus_4813#0 CACTTCTATCTGGGCAGCGCCAACATGGACTGGCGGTCGCTGACGCAGGTGAAGGAGCTG 1139
consensus_4813#1 ------------------------------------------------------------
consensus_4813#0 GGCGT 1144
consensus_4813#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||