cluster # 4817

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Anopheles gambiae
cluster # 4817 cluster # 4817 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4817#0 length = 738 sequences # 2

consensus_4817#1 length = 614 sequences # 1

consensusID : consensus_4817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 738
fasta sequence

                              [GCTGTTTTCCTGTTGTTTTNTTTTATACTTTAACGTCAGCAAATGAGTACGTCGCCAGGGCTAAGAAGCAACAGTTGTGATAGGTCAGATTGCACAGATTAATTAACGGCGTGCATACGTTTGGTAGGGGAAACTCTTACTTCTCTTCAGCTGCACGAGCAGCCGGGATGATACAGAAAACAATATCTCTTTCTGGTTCGTAGCAACTAAGTGACCTTAATTTTAGCAAGGATACTTTGCCGTCCCGACAGCGCAAACGATTCTAGACACGCCGTCAATCGATATCGCAAACTGACGAACCGCAACGCTGGTCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTACAT---TACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTA-CCATTTGCACGCTGTATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCCTGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTCACGGTGATGTCATCGTAAGGTTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGCGACAAGAAGCGAGTAAAACCTTTTTGAGGCAGCCCTGGTNTATGNCGTCTATTTCGATGCCGTCNTTCTCAGGACAAACCATCATTGTGATCTGCCTTTCAGGTAATCTCGACTTTACCGGANGAGGAACCATTTTGGCGCTGCACGGTTTATTTAAGCACA]

[+] EMBL BX466843             [GCTGTTTTCCTGTTGTTTTNTTTTATACTTTAACGTCAGCAAATGAGTACGTCGCCAGGGCTAAGAAGCAACAGTTGTGATAGGTCAGATTGCACAGATTAATTAACGGCGTGCATACGTTTGGTAGGGGAAACTCTTACTTCTCTTCAGCTGCACGAGCAGCCGGGATGATACAGAAAACAATATCTCTTTCTGGTTCGTAGCAACTAAGTGACCTTAATTTTAGCAAGGATACTTTGCCGTCCCGACAGCGCAAACGATTCTAGACACGCCGTCAATCGATATCGCAAACTGACGAACCGCAACGCTGGTCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTACAT   TACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTA CCATTTGCACGCTGTATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCCTGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTCACGGTGATGTCATCGTAAGGTTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGCGACAAGAAGCGAGTAAAACCTTTTTGAGGCAGCCCTGGTNTATGNCGTCTATTTCGATGCCGTCNTTCTCAGGACAAACCATCATTGTGATCTGCCTTTCAGGTAATCTCGACTTTACCGGANGAGGAACCATTTTGGCGCTGCACGGTTTATTTAAGCACA]
[-] EMBL BM636950             [                                                                    CAACAGTTGTGATAGGTTAGATTGCACAGATTAATTAACGGCGTGCATACGTTTGGTACGGGAAACTCTTACTTCTCTTCAGCTGCACGAGCAGCCGGGATGATACAGAAAACAATATCTCTTTCTGGTTCGTAGCAGCTAAGTGACCTTAATTTTAGCAAGGATACTTTGCCGTCCTAACAGTACAAACGATTCTAGACACGCCGTCAATCGATATCGCAAACTGACGAACCGCAACGCTGGTCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTACATCAGTACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTACCCATTTGCACGCTGTATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCCTGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTAACGGTGATGTCATCGTAAGGTTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGC ACAAGAAGCGAGTAAAAC  TTTTGA GCAG CCTGTTTTTT   GT TATTTCGATG CGTC ATCTCA GACAA  CATCA TGTGATCTGCC TTCA GTAATCTCGACTTTA CGGA GAGGAA CATTT  GCGCTGCAC GTTTATTTAgccgg ]




>consensus_4817#0
GCTGTTTTCCTGTTGTTTTNTTTTATACTTTAACGTCAGCAAATGAGTACGTCGCCAGGG
CTAAGAAGCAACAGTTGTGATAGGTCAGATTGCACAGATTAATTAACGGCGTGCATACGT
TTGGTAGGGGAAACTCTTACTTCTCTTCAGCTGCACGAGCAGCCGGGATGATACAGAAAA
CAATATCTCTTTCTGGTTCGTAGCAACTAAGTGACCTTAATTTTAGCAAGGATACTTTGC
CGTCCCGACAGCGCAAACGATTCTAGACACGCCGTCAATCGATATCGCAAACTGACGAAC
CGCAACGCTGGTCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTACA
TTACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTACCATTTGCACGCTGTATAA
AATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCCTGCT
TACAGCTTAGGATTATCGAACAACGGGCCTCTCGTCACGGTGATGTCATCGTAAGGTTGC
TTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGCGACAAGAAGCGAGTAAAACCTTTT
TGAGGCAGCCCTGGTNTATGNCGTCTATTTCGATGCCGTCNTTCTCAGGACAAACCATCA
TTGTGATCTGCCTTTCAGGTAATCTCGACTTTACCGGANGAGGAACCATTTTGGCGCTGC
ACGGTTTATTTAAGCACA

consensusID : consensus_4817#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [ACCGCAACGCTGGTCCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTACATCAGTACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTACCATTTGCACGCTGTATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCCTGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTAACGGTGATGTCATCGTAAGGTTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGCACAAGAAGCGAGTAAAACTTTTGAGCAGCCTGTTTTTTGTTATTTCGATGCGTCATCTCAGACAACATCATGTGATCTGCCTTCAGTAATCTCGACTTTACGGAGAGGAACATTTGCGCTGCACGTTTATTTAGCACACGTTCCTCAAACTGCTCGATCGTTTCATCCACTTGCTGCTCCTCGTTAGGATGGGTAGCACCGACAGAAGGTGGGAACTCATAGTCACCATTCCAATCATTAGCTATTTCCTCGGAGGTGTTGCCATCGAATCCCATATTCGAAAAACCTTCCATTCCGGGTTCGTTGAGAATGGAGGAAACTTGATCGGCCGG]

[-] EMBL BM641610             [ACCGCAACGCTGGTCCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTACATCAGTACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTACCATTTGCACGCTGTATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCCTGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTAACGGTGATGTCATCGTAAGGTTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGCACAAGAAGCGAGTAAAACTTTTGAGCAGCCTGTTTTTTGTTATTTCGATGCGTCATCTCAGACAACATCATGTGATCTGCCTTCAGTAATCTCGACTTTACGGAGAGGAACATTTGCGCTGCACGTTTATTTAGCACACGTTCCTCAAACTGCTCGATCGTTTCATCCACTTGCTGCTCCTCGTTAGGATGGGTAGCACCGACAGAAGGTGGGAACTCATAGTCACCATTCCAATCATTAGCTATTTCCTCGGAGGTGTTGCCATCGAATCCCATATTCGAAAAACCTTCCATTCCGGGTTCGTTGAGAATGGAGGAAACTTGATCGGCCGG]




>consensus_4817#1
ACCGCAACGCTGGTCCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGT
ACATCAGTACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTACCATTTGCACGCT
GTATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGC
CCTGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTAACGGTGATGTCATCGTAA
GGTTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGCACAAGAAGCGAGTAAAAC
TTTTGAGCAGCCTGTTTTTTGTTATTTCGATGCGTCATCTCAGACAACATCATGTGATCT
GCCTTCAGTAATCTCGACTTTACGGAGAGGAACATTTGCGCTGCACGTTTATTTAGCACA
CGTTCCTCAAACTGCTCGATCGTTTCATCCACTTGCTGCTCCTCGTTAGGATGGGTAGCA
CCGACAGAAGGTGGGAACTCATAGTCACCATTCCAATCATTAGCTATTTCCTCGGAGGTG
TTGCCATCGAATCCCATATTCGAAAAACCTTCCATTCCGGGTTCGTTGAGAATGGAGGAA
ACTTGATCGGCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4817#0      GCTGTTTTCCTGTTGTTTTNTTTTATACTTTAACGTCAGCAAATGAGTACGTCGCCAGGG 60
consensus_4817#1      ------------------------------------------------------------
                                                                                  

consensus_4817#0      CTAAGAAGCAACAGTTGTGATAGGTCAGATTGCACAGATTAATTAACGGCGTGCATACGT 120
consensus_4817#1      ------------------------------------------------------------
                                                                                  

consensus_4817#0      TTGGTAGGGGAAACTCTTACTTCTCTTCAGCTGCACGAGCAGCCGGGATGATACAGAAAA 180
consensus_4817#1      ------------------------------------------------------------
                                                                                  

consensus_4817#0      CAATATCTCTTTCTGGTTCGTAGCAACTAAGTGACCTTAATTTTAGCAAGGATACTTTGC 240
consensus_4817#1      ------------------------------------------------------------
                                                                                  

consensus_4817#0      CGTCCCGACAGCGCAAACGATTCTAGACACGCCGTCAATCGATATCGCAAACTGACGAAC 300
consensus_4817#1      ----------------------------------------------------------AC 2
                                                                                **

consensus_4817#0      CGCAACGCTGGTCCC-GTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTAC 359
consensus_4817#1      CGCAACGCTGGTCCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTAC 62
                      *************** ********************************************

consensus_4817#0      AT---TACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTACCATTTGCACGCTGT 416
consensus_4817#1      ATCAGTACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTACCATTTGCACGCTGT 122
                      **   *******************************************************

consensus_4817#0      ATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCC 476
consensus_4817#1      ATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCC 182
                      ************************************************************

consensus_4817#0      TGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTCACGGTGATGTCATCGTAAGG 536
consensus_4817#1      TGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTAACGGTGATGTCATCGTAAGG 242
                      *************************************** ********************

consensus_4817#0      TTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGCGACAAGAAGCGAGTAAAACC 596
consensus_4817#1      TTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGC-ACAAGAAGCGAGTAAAACT 301
                      **************************************** ****************** 

consensus_4817#0      TTTTTGAGGCAGCCCTGGTNTATGNCGTCTATTTCGATGCCGTCNTTCTCAGGACAAACC 656
consensus_4817#1      TTT---GAGCAGCC-TGTTTTTTGT----TATTTCGATGC-GTCAT-CTCAG-ACAA--C 348
                      ***     ****** ** * * **     *********** *** * ***** ****  *

consensus_4817#0      ATCATTGTGATCTGCCTTTCAGGTAATCTCGACTTTACCGGANGAGGAACCATTTTGGCG 716
consensus_4817#1      ATCAT-GTGATCTGCCTTC--AGTAATCTCGACTTTAC--GGAGAGGAAC-ATTT--GCG 400
                      ***** ************    ****************  *  ******* ****  ***

consensus_4817#0      CTGCACGGTTTATTTAAGCACA-------------------------------------- 738
consensus_4817#1      CTGCACG-TTTATTTA-GCACACGTTCCTCAAACTGCTCGATCGTTTCATCCACTTGCTG 458
                      ******* ******** *****                                      

consensus_4817#0      ------------------------------------------------------------
consensus_4817#1      CTCCTCGTTAGGATGGGTAGCACCGACAGAAGGTGGGAACTCATAGTCACCATTCCAATC 518
                                                                                  

consensus_4817#0      ------------------------------------------------------------
consensus_4817#1      ATTAGCTATTTCCTCGGAGGTGTTGCCATCGAATCCCATATTCGAAAAACCTTCCATTCC 578
                                                                                  

consensus_4817#0      ------------------------------------
consensus_4817#1      GGGTTCGTTGAGAATGGAGGAAACTTGATCGGCCGG 614