cluster # 4824

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Anopheles gambiae
cluster # 4824 cluster # 4824 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4824#0 length = 893 sequences # 2

consensus_4824#1 length = 536 sequences # 1

consensusID : consensus_4824#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 893
fasta sequence

                              [TGCTGGTGCTTAATTTGCGCACCGTAAAAACACACAAAATAAAACCGCACGAGCTGTGCCGTGATTACATCGGATCGGAGCATATCAAGGAGCATAGGTCGTGTGACAACACGTTTCAACACGTGAAGAGGAACGTGGAATGCTGGTTCTGTGAATCACCAATCAGTCGGAAGTGCTGCGGCAGTATGTAAGACACAGAGAGAGAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCCTTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCTTTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTGAGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGTAAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACCGAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAATATCAAGTACGAGATGGACATGAAGATGGAACCGTCCAGCCCGCCGGAAAAGGATCGCAACATGTACTCGCGGTGCTCGAGCGCGGGCAGCATCCACACACCGACCTCCTCCGCGCACAACTCGGAGGACGAGGAGGACTCGGGCGACAACAAGAGCAGCACGATGAGCTACAAGGAGCGCCGGCGGGAGGCACACACGCAGGCGGAGCAGAAGCGGCGCGACGCGATCAAGAAGGGGTACGACTCGCTGCAGGAGCTGGTGCCGACCTGCCAGCAGACCGACGCGTCCGGCTACAAGCTGAGCAAGGCGTCCGTGCTGCAGAAGTCGATCGACTACATCGGCTACCTGCAGCAGAACAAGAAGAAGCTCGAG]

[+] EMBL BX604358             [TGCTGGTGCTTAATTTGCGCACCGTAAAAACACACAAAATAAAACCGCACGAGCTGTGCCGTGATTACATCGGATCGGAGCATATCAAGGAGCATAGGTCGTGTGACAACACGTTTCAACACGTGAAGAGGAACGTGGAATGCTGGTTCTGTGAATCACCAATCAGTCGGAAGTGCTGCGGCAGTATGTAAGACACAGAGAGAGAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCCTTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCTTTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTGAGACACTGACAACAATCGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX605242             [                                                                                                                                                                                                                                                                                                             TCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTGAGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGTAAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACCGAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAATATCAAGTACGAGATGGACATGAAGATGGAACCGTCCAGCCCGCCGGAAAAGGATCGCAACATGTACTCGCGGTGCTCGAGCGCGGGCAGCATCCACACACCGACCTCCTCCGCGCACAACTCGGAGGACGAGGAGGACTCGGGCGACAACAAGAGCAGCACGATGAGCTACAAGGAGCGCCGGCGGGAGGCACACACGCAGGCGGAGCAGAAGCGGCGCGACGCGATCAAGAAGGGGTACGACTCGCTGCAGGAGCTGGTGCCGACCTGCCAGCAGACCGACGCGTCCGGCTACAAGCTGAGCAAGGCGTCCGTGCTGCAGAAGTCGATCGACTACATCGGCTACCTGCAGCAGAACAAGAAGAAGCTCGAG]




>consensus_4824#0
TGCTGGTGCTTAATTTGCGCACCGTAAAAACACACAAAATAAAACCGCACGAGCTGTGCC
GTGATTACATCGGATCGGAGCATATCAAGGAGCATAGGTCGTGTGACAACACGTTTCAAC
ACGTGAAGAGGAACGTGGAATGCTGGTTCTGTGAATCACCAATCAGTCGGAAGTGCTGCG
GCAGTATGTAAGACACAGAGAGAGAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCC
TTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCT
TTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTG
AGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGT
AAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACC
GAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAATATCAAGTACGAGATGGACA
TGAAGATGGAACCGTCCAGCCCGCCGGAAAAGGATCGCAACATGTACTCGCGGTGCTCGA
GCGCGGGCAGCATCCACACACCGACCTCCTCCGCGCACAACTCGGAGGACGAGGAGGACT
CGGGCGACAACAAGAGCAGCACGATGAGCTACAAGGAGCGCCGGCGGGAGGCACACACGC
AGGCGGAGCAGAAGCGGCGCGACGCGATCAAGAAGGGGTACGACTCGCTGCAGGAGCTGG
TGCCGACCTGCCAGCAGACCGACGCGTCCGGCTACAAGCTGAGCAAGGCGTCCGTGCTGC
AGAAGTCGATCGACTACATCGGCTACCTGCAGCAGAACAAGAAGAAGCTCGAG

consensusID : consensus_4824#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [GAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCCTTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCTTTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTGAGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGTAAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACCGAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAGTAAGCTTGTCCGGGGCAGAGCTGCACAACACGTGCAGGCTGTTATCGTACACACACACACATACACCATACCATACGCTTTACTTTTCCTCCGCCTTCCGCTCAGATATCAAGTACGAGATGGACATGAAGATGGAACCGTCCAGCCCGCCGGAAAAGGATCGCAACATGTACTCGCGGTGCTCGAGCGCGGGCAGCATCCACACACCGACCTCCTCCG]

[+] EMBL BX604106             [GAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCCTTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCTTTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTGAGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGTAAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACCGAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAGTAAGCTTGTCCGGGGCAGAGCTGCACAACACGTGCAGGCTGTTATCGTACACACACACACATACACCATACCATACGCTTTACTTTTCCTCCGCCTTCCGCTCAGATATCAAGTACGAGATGGACATGAAGATGGAACCGTCCAGCCCGCCGGAAAAGGATCGCAACATGTACTCGCGGTGCTCGAGCGCGGGCAGCATCCACACACCGACCTCCTCCG]




>consensus_4824#1
GAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCCTTCATTGTGTGCTACAAATAGGC
AACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCTTTCCCCCTCGGTGCGCACGTCTT
ATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTGAGACACTGACAACAATCGAGGCG
GTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGTAAAACTACCTGCAAAAACCTGTG
CCTGAACGCGGCAAAACCTTCCGTCACGTCACACACCGAGGAACGCAGGAAAACGAAACG
GGCCAAATGAACGACAGTAAGCTTGTCCGGGGCAGAGCTGCACAACACGTGCAGGCTGTT
ATCGTACACACACACACATACACCATACCATACGCTTTACTTTTCCTCCGCCTTCCGCTC
AGATATCAAGTACGAGATGGACATGAAGATGGAACCGTCCAGCCCGCCGGAAAAGGATCG
CAACATGTACTCGCGGTGCTCGAGCGCGGGCAGCATCCACACACCGACCTCCTCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4824#0      TGCTGGTGCTTAATTTGCGCACCGTAAAAACACACAAAATAAAACCGCACGAGCTGTGCC 60
consensus_4824#1      ------------------------------------------------------------
                                                                                  

consensus_4824#0      GTGATTACATCGGATCGGAGCATATCAAGGAGCATAGGTCGTGTGACAACACGTTTCAAC 120
consensus_4824#1      ------------------------------------------------------------
                                                                                  

consensus_4824#0      ACGTGAAGAGGAACGTGGAATGCTGGTTCTGTGAATCACCAATCAGTCGGAAGTGCTGCG 180
consensus_4824#1      ------------------------------------------------------------
                                                                                  

consensus_4824#0      GCAGTATGTAAGACACAGAGAGAGAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCC 240
consensus_4824#1      -----------------------GAGAGAGGGAAAGAGAAAGGGAGCTGTTTATCAGCCC 37
                                             *************************************

consensus_4824#0      TTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCT 300
consensus_4824#1      TTCATTGTGTGCTACAAATAGGCAACCGTCCCTGTGTGTGAGTGTCTTTTTTCTCACTCT 97
                      ************************************************************

consensus_4824#0      TTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTG 360
consensus_4824#1      TTCCCCCTCGGTGCGCACGTCTTATCAGTTGTAGGGCGCCATCATTGCGTCGCCGTTCTG 157
                      ************************************************************

consensus_4824#0      AGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGT 420
consensus_4824#1      AGACACTGACAACAATCGAGGCGGTGAACTCATTGCTGCGTGATTATCGCACCAAAAGGT 217
                      ************************************************************

consensus_4824#0      AAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACC 480
consensus_4824#1      AAAACTACCTGCAAAAACCTGTGCCTGAACGCGGCAAAACCTTCCGTCACGTCACACACC 277
                      ************************************************************

consensus_4824#0      GAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAATAT-CAAGTACGAGATGGAC 539
consensus_4824#1      GAGGAACGCAGGAAAACGAAACGGGCCAAATGAACGACAGTAAGCTTGTCCGGGGCAGAG 337
                      *************************************** **  *  ** ** *   ** 

consensus_4824#0      ATGAAGATGGAACCGTCCAGCCCGCCGGAAAAGGATCGCAACATGTACTCGCG-GTGCTC 598
consensus_4824#1      CTGCACA---ACACGTGCAGGCTGTT--------ATCGTA-CACACACACACATACACCA 385
                       ** * *   *  *** *** * *          **** * **   ** * *     *  

consensus_4824#0      GAGCGCGGGCAGCATCCACACACCGACCTCCTCCGCGCACAACTCGGAGGACGAGGAGGA 658
consensus_4824#1      TACCATACGCTTTACTTTTCCTCCG---CCTTCCGCTCAGATATCA-AGTACGAGATGGA 441
                       * *    **   *      * ***    * ***** ** *  **  ** *****  ***

consensus_4824#0      CTCGGGCGACAACAAGAGCAGCACGATGAGCTACAAGGAGCGCCGGCGGGAGGCACACAC 718
consensus_4824#1      CATGAAGATGGAACCGTCCAGCCCGCCGG---AAAAGGATCGC----------AACATGT 488
                      *  *       *   *  **** **  *    * ***** ***           ***   

consensus_4824#0      GCAGGCGGAGCAGAAGCGGCGCGACGCGATCAAGAAGGGGTACGACTCGCTGCAGGAGCT 778
consensus_4824#1      ACTCGCGGTGCTCGAGCG-CGGGCAGCATCCACACACCGACCTCCTCCG----------- 536
                       *  **** **   **** ** *  **   **   *  *        **           

consensus_4824#0      GGTGCCGACCTGCCAGCAGACCGACGCGTCCGGCTACAAGCTGAGCAAGGCGTCCGTGCT 838
consensus_4824#1      ------------------------------------------------------------
                                                                                  

consensus_4824#0      GCAGAAGTCGATCGACTACATCGGCTACCTGCAGCAGAACAAGAAGAAGCTCGAG 893
consensus_4824#1      -------------------------------------------------------