cluster # 4827

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4827 cluster # 4827 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4827#0 length = 746 sequences # 2

consensus_4827#1 length = 587 sequences # 1

consensusID : consensus_4827#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 746
fasta sequence

                              [GACAGACACACACACCTGGACAGGATGTATTGGTTTGCCAATCGGAAAAAAGCATGCGTGCGAGGACTGAGTAATTGAATGTGCAAACGAAACGAAAGACACGGAAGCAACATGCTTTCCGCAAACAAAGAAAAAAAATATGCCTGGCTTGTTTGCTCAAATCCTACCAAGAACGGCTCAAATCTAGTGCAAAGCGATGGGTAGGGAAAGAAGGGGAAGAATCAGAACACGCGAATAGTAAAATCAGACGGACCCGGATCGTAAAGGATTATGGTTGGGCGATGGTAGGGACAGCGAGAACAAGCAATAATTTTTCAAGCACAGCAGTATTTTCGTAACAAACGTTTAGTTTAA-TTATTTTCTTTCTTTTCTTTAAGTTTTCCCCAGTATGTTTCCCACCTAATATTTGTATCCCCCCGTTTCTGCCATCCCCACCAAATGCCGATTCGATTAGGGACAGTAGTAGCAATATTTCTCACACGCGTTTGCTATTGTAA-TGTA-CATAGTTAGGGA---AAAGTA-TGCTCTTAGCAGCACGAA-TCTGTATCCGTTTTTTTCTTTTTTTGTTCCGGGACGCGAGCACCGCGACCATGCTTCGTTTGTTTTTCGCAAGGCTCAATGCTGTTTACCACTTTGTGTATTATTTTTCCGTTTTCTCTCCAACTATAAGCAATATTAGTTTTTATTTATTTCGTTCTTCTGTGTGTCCTGTGCGATCGTAATACTTTCTGGCGTGGCTTTCGGCCGTC]

[+] EMBL BX623808             [GACAGACACACACACCTGGACAGGATGTATTGGTTTGCCAATCGGAAAAAAGCATGCGTGCGAGGACTGAGTAATTGAATGTGCAAACGAAACGAAAGACACGGAAGCAACATGCTTTCCGCAAACAAAGAAAAAAAATATGCCTGGCTTGTTTGCTCAAATCCTACCAAGAACGGCTCAAATCTAGTGCAAAGCGATGGGTAGGGAAAGAAGGGGAAGAATCAGAACACGCGAATAGTAAAATCAGACGGACCCGGATCGTAAAGGATTATGGTTGGGCGATGGTAGGGACAGCGAGAACAAGCAATAATTTTTCAAGCACAGCAGTATTTTCGTAACAAACGTTTAGTTTAA TTATTTTCTTTCTTTTCTTTAAGTTTTCCCCAGTATGTTTCCCACCTAATATTTGTATCCCCCCGTTTCTGCCATCCCCACCAAATGCCGATTCGATTAGGGACAGTAGTAGCAATATTTCTCACACGCGTTTGCTATTGTAA TGTA CATAGTTAGGGA   AAAGTA TGCTCTTAGCAGCACGAA TCTGTATCCGTTTTTTTCTTTTTTTGTTCCGGGACGCGAGCACCGCGACCATGCTTCGTTTGTTTTTCGCAAGGCTCAATGCTGTTTACCACTTTGTGTATTATTTTTCCGTTTTCTCTCCAACTATAAGCAATATTAGTTTTT                                                                 ]
[+] EMBL AL931378             [                                                                                                                                                                                                                        cgaggtntGAACACGCGAATAGTAAAATCAGACGGACCCGGATCGTAAAGGATTATGGTTGGGCGATGGTAGGGACAGCGAGAACAAGCAATAATTTTTCAAGCACAGCAGTATTTTCGTAACAAACGTTTAGTTTAACTTATTTTCTTTCTTTTCTTTAAGTTTTCCCCAGTATGTTTCCCACCTAATATTTGTATCCCCCCGTTTCTGCCATCCCCAACAAATGCCGATTCGATTAGGGACAGTAGTAGCAATATTTCTCACACGCGTTTGCTATTGTAACTGTACCATAGTTAGGGACACACAGTACTGCTCTTAGCAGCACGAAGTCTGTATCCGTTTTTTTCTTTTCCGGTTCCGGGACGCGAGCACCGCGACCATGCTTCG TTGTTTTTCGCAAGGCTCAATGCTGTTTACCACTTTGTGTATTATTTTTCCGTTTTCTCTCCAACTATAAGCAATATTAGTNTTTATTTATTTCGTTCTTCTGTGTGTCCTGTGCGATCGTAATACTTTCTGGCGTGGCTTTCGGCCGTC]




>consensus_4827#0
GACAGACACACACACCTGGACAGGATGTATTGGTTTGCCAATCGGAAAAAAGCATGCGTG
CGAGGACTGAGTAATTGAATGTGCAAACGAAACGAAAGACACGGAAGCAACATGCTTTCC
GCAAACAAAGAAAAAAAATATGCCTGGCTTGTTTGCTCAAATCCTACCAAGAACGGCTCA
AATCTAGTGCAAAGCGATGGGTAGGGAAAGAAGGGGAAGAATCAGAACACGCGAATAGTA
AAATCAGACGGACCCGGATCGTAAAGGATTATGGTTGGGCGATGGTAGGGACAGCGAGAA
CAAGCAATAATTTTTCAAGCACAGCAGTATTTTCGTAACAAACGTTTAGTTTAATTATTT
TCTTTCTTTTCTTTAAGTTTTCCCCAGTATGTTTCCCACCTAATATTTGTATCCCCCCGT
TTCTGCCATCCCCACCAAATGCCGATTCGATTAGGGACAGTAGTAGCAATATTTCTCACA
CGCGTTTGCTATTGTAATGTACATAGTTAGGGAAAAGTATGCTCTTAGCAGCACGAATCT
GTATCCGTTTTTTTCTTTTTTTGTTCCGGGACGCGAGCACCGCGACCATGCTTCGTTTGT
TTTTCGCAAGGCTCAATGCTGTTTACCACTTTGTGTATTATTTTTCCGTTTTCTCTCCAA
CTATAAGCAATATTAGTTTTTATTTATTTCGTTCTTCTGTGTGTCCTGTGCGATCGTAAT
ACTTTCTGGCGTGGCTTTCGGCCGTC

consensusID : consensus_4827#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [TTTCGTAACAAACGTTTAGTTTAATTATTTTCTTTCGTTTCTTTAAGTTTTCCCCAATATGTTCCCCACCTAATTTTTGTATCCCCCCGTTTCTGCCATCCCCACCAAATGCCGATTCGATTAGGGACAGTAGTAGCAATATTTCTCACACGCGTTTGCTATTGTAATGTACATAGTTAGGGAAAAGTATGCTCTTAGCAGCACGAATCTGTATCCGTTTTTTTTTCTTTTTTTGTTCCGGGACGCGAGCACCGCGACCGAGCAAGGCTCAATGCTGTTTACCACTTTGTGTATTATTTTTCCGTTTTCTCTCCAACTATAAGCAATATTAGTTTTTTTGTTTGTTTTCTGTTTGTTTGTGCGATCGTAATACTTTCTGGCGTGGCTTTCGGCCGTCAGCCGTCAGCATCAAAGTGCGGGGAAGAAAAAAACAAAGCGCGTACTTAGCAAAAGGAAAGAGAAACACACTAATCACAATCGTCATCCACACCGCTGGCACACCCTCGTGTTAGTTGCCTTTTTTTTTTGCTCGACTTTTGTTAAATATTGTTTCGTTTATGTATTCTTATTTTGTTTCTTCTGTTCTG]

[+] EMBL BX611874             [TTTCGTAACAAACGTTTAGTTTAATTATTTTCTTTCGTTTCTTTAAGTTTTCCCCAATATGTTCCCCACCTAATTTTTGTATCCCCCCGTTTCTGCCATCCCCACCAAATGCCGATTCGATTAGGGACAGTAGTAGCAATATTTCTCACACGCGTTTGCTATTGTAATGTACATAGTTAGGGAAAAGTATGCTCTTAGCAGCACGAATCTGTATCCGTTTTTTTTTCTTTTTTTGTTCCGGGACGCGAGCACCGCGACCGAGCAAGGCTCAATGCTGTTTACCACTTTGTGTATTATTTTTCCGTTTTCTCTCCAACTATAAGCAATATTAGTTTTTTTGTTTGTTTTCTGTTTGTTTGTGCGATCGTAATACTTTCTGGCGTGGCTTTCGGCCGTCAGCCGTCAGCATCAAAGTGCGGGGAAGAAAAAAACAAAGCGCGTACTTAGCAAAAGGAAAGAGAAACACACTAATCACAATCGTCATCCACACCGCTGGCACACCCTCGTGTTAGTTGCCTTTTTTTTTTGCTCGACTTTTGTTAAATATTGTTTCGTTTATGTATTCTTATTTTGTTTCTTCTGTTCTG]




>consensus_4827#1
TTTCGTAACAAACGTTTAGTTTAATTATTTTCTTTCGTTTCTTTAAGTTTTCCCCAATAT
GTTCCCCACCTAATTTTTGTATCCCCCCGTTTCTGCCATCCCCACCAAATGCCGATTCGA
TTAGGGACAGTAGTAGCAATATTTCTCACACGCGTTTGCTATTGTAATGTACATAGTTAG
GGAAAAGTATGCTCTTAGCAGCACGAATCTGTATCCGTTTTTTTTTCTTTTTTTGTTCCG
GGACGCGAGCACCGCGACCGAGCAAGGCTCAATGCTGTTTACCACTTTGTGTATTATTTT
TCCGTTTTCTCTCCAACTATAAGCAATATTAGTTTTTTTGTTTGTTTTCTGTTTGTTTGT
GCGATCGTAATACTTTCTGGCGTGGCTTTCGGCCGTCAGCCGTCAGCATCAAAGTGCGGG
GAAGAAAAAAACAAAGCGCGTACTTAGCAAAAGGAAAGAGAAACACACTAATCACAATCG
TCATCCACACCGCTGGCACACCCTCGTGTTAGTTGCCTTTTTTTTTTGCTCGACTTTTGT
TAAATATTGTTTCGTTTATGTATTCTTATTTTGTTTCTTCTGTTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4827#0      GACAGACACACACACCTGGACAGGATGTATTGGTTTGCCAATCGGAAAAAAGCATGCGTG 60
consensus_4827#1      ------------------------------------------------------------
                                                                                  

consensus_4827#0      CGAGGACTGAGTAATTGAATGTGCAAACGAAACGAAAGACACGGAAGCAACATGCTTTCC 120
consensus_4827#1      ------------------------------------------------------------
                                                                                  

consensus_4827#0      GCAAACAAAGAAAAAAAATATGCCTGGCTTGTTTGCTCAAATCCTACCAAGAACGGCTCA 180
consensus_4827#1      ------------------------------------------------------------
                                                                                  

consensus_4827#0      AATCTAGTGCAAAGCGATGGGTAGGGAAAGAAGGGGAAGAATCAGAACACGCGAATAGTA 240
consensus_4827#1      ------------------------------------------------------------
                                                                                  

consensus_4827#0      AAATCAGACGGACCCGGATCGTAAAGGATTATGGTTGGGCGATGGTAGGGACAGCGAGAA 300
consensus_4827#1      ------------------------------------------------------------
                                                                                  

consensus_4827#0      CAAGCAATAATTTTTCAAGCACAGCAGTATTTTCGTAACAAACGTTTAGTTTAATTATTT 360
consensus_4827#1      ------------------------------TTTCGTAACAAACGTTTAGTTTAATTATTT 30
                                                    ******************************

consensus_4827#0      TCTTTCTTTTCTTTAAGTTTTCCCCAGTATGTTTCCCACCTAATATTTGTATCCCCCCGT 420
consensus_4827#1      TCTTTCGTTTCTTTAAGTTTTCCCCAATATGTTCCCCACCTAATTTTTGTATCCCCCCGT 90
                      ****** ******************* ****** ********** ***************

consensus_4827#0      TTCTGCCATCCCCACCAAATGCCGATTCGATTAGGGACAGTAGTAGCAATATTTCTCACA 480
consensus_4827#1      TTCTGCCATCCCCACCAAATGCCGATTCGATTAGGGACAGTAGTAGCAATATTTCTCACA 150
                      ************************************************************

consensus_4827#0      CGCGTTTGCTATTGTAATGTACATAGTTAGGGAAAAGTATGCTCTTAGCAGCACGAATCT 540
consensus_4827#1      CGCGTTTGCTATTGTAATGTACATAGTTAGGGAAAAGTATGCTCTTAGCAGCACGAATCT 210
                      ************************************************************

consensus_4827#0      GTATCCGTTTTTTT--CTTTTTTTGTTCCGGGACGCGAGCACCGCGACCATGCTTCGTTT 598
consensus_4827#1      GTATCCGTTTTTTTTTCTTTTTTTGTTCCGGGACGCGAGCACCGCGACCGA--------- 261
                      **************  *********************************           

consensus_4827#0      GTTTTTCGCAAGGCTCAATGCTGTTTACCACTTTGTGTATTATTTTTCCGTTTTCTCTCC 658
consensus_4827#1      -------GCAAGGCTCAATGCTGTTTACCACTTTGTGTATTATTTTTCCGTTTTCTCTCC 314
                             *****************************************************

consensus_4827#0      AACTATAAGCAATATTAGTTTTTATTTATTTCGTTCTTCTGTGTGTCCTGTGCGATCGTA 718
consensus_4827#1      AACTATAAGCAATATTAGTTTTT--TTGTTTG--TTTTCTGTTTGTT-TGTGCGATCGTA 369
                      ***********************  ** ***   * ****** ***  ************

consensus_4827#0      ATACTTTCTGGCGTGGCTTTCGGCCGTC-------------------------------- 746
consensus_4827#1      ATACTTTCTGGCGTGGCTTTCGGCCGTCAGCCGTCAGCATCAAAGTGCGGGGAAGAAAAA 429
                      ****************************                                

consensus_4827#0      ------------------------------------------------------------
consensus_4827#1      AACAAAGCGCGTACTTAGCAAAAGGAAAGAGAAACACACTAATCACAATCGTCATCCACA 489
                                                                                  

consensus_4827#0      ------------------------------------------------------------
consensus_4827#1      CCGCTGGCACACCCTCGTGTTAGTTGCCTTTTTTTTTTGCTCGACTTTTGTTAAATATTG 549
                                                                                  

consensus_4827#0      --------------------------------------
consensus_4827#1      TTTCGTTTATGTATTCTTATTTTGTTTCTTCTGTTCTG 587