cluster # 4840

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Anopheles gambiae
cluster # 4840 cluster # 4840 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4840#0 length = 715 sequences # 2

consensus_4840#1 length = 577 sequences # 1

consensusID : consensus_4840#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 715
fasta sequence

                              [CCGCGCACGTGTATTCTACACAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCTCGTAATACGTCCCCTGAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGACAGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGGTCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGTGCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTGGATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAGCGTGGGCCAACGCAAACATTGCCACTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGCTCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTTAGCAATCTGGCCAAAATCCTCGAATCCGTCGGGCCCAAGCTAGAACCGTCGGTGGTCCCATCGGCATTGAGCTTCCTCGAGCTGGCCATGCAGCATTATGCTGGTGCTTGTGGGCCGTTGAAAAGCCGCATCGAGACGTTCCTTTACTCGCTGGTCGATTCTACCGATCGGTTCGTGGTTAACCGTACGGCCAACTGTTTGCTGCTGCTGCAACAAATCCGAGGCGGAGGACAGCACGGTTCGCTGCATAAGAAAACTT]

[+] EMBL BM623194             [CCGCGCACGTGTATTCTACACAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCTCGTAATACGTCCCCTGAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGACAGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGGTCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGTGCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTGGATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAGCGTGGGCCAA                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM599155             [                              ccgGTGATTGCTTTACTGTATTTCGTGTCTCGTAATACGTCCCCTGAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGACAGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGGTCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGTGCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTGGATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAGCGTGGGCCAACGCAAACATTGCCACTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGCTCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTTAGCAATCTGGCCAAAATCCTCGAATCCGTCGGGCCCAAGCTAGAACCGTCGGTGGTCCCATCGGCATTGAGCTTCCTCGAGCTGGCCATGCAGCATTATGCTGGTGCTTGTGGGCCGTTGAAAAGCCGCATCGAGACGTTCCTTTACTCGCTGGTCGATTCTACCGATCGGTTCGTGGTTAACCGTACGGCCAACTGTTTGCTGCTGCTGCAACAAATCCGAGGCGGAGGACAGCACGGTTCGCTGCATAAGAAAACTT]




>consensus_4840#0
CCGCGCACGTGTATTCTACACAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCT
CGTAATACGTCCCCTGAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGAC
AGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGG
TCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGT
GCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTG
GATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAG
CGTGGGCCAACGCAAACATTGCCACTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGC
TCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTTAGCAATCTGGCCAAAATCCTCGAA
TCCGTCGGGCCCAAGCTAGAACCGTCGGTGGTCCCATCGGCATTGAGCTTCCTCGAGCTG
GCCATGCAGCATTATGCTGGTGCTTGTGGGCCGTTGAAAAGCCGCATCGAGACGTTCCTT
TACTCGCTGGTCGATTCTACCGATCGGTTCGTGGTTAACCGTACGGCCAACTGTTTGCTG
CTGCTGCAACAAATCCGAGGCGGAGGACAGCACGGTTCGCTGCATAAGAAAACTT

consensusID : consensus_4840#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence

                              [CCGCGGACGCGTGGGCAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCTCGTAATACGTCCCCTTAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGACAGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGGTCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGTGCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTGGATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAGCGTGGGCCAACGCAAACATTGCCGCTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGCTCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTCAGCAATCTGGCCAAAATCCTCGGAATCCGTCGGGCCCAAGCTAGAAACCTTCGGCGGTCCCATCGGCATTGAGCTTTCCTCGAGTTGGCCATGCAGCATTATGCTGGGTGCTTGGTGGGCCGTTGA]

[+] EMBL BM589709             [CCGCGGACGCGTGGGCAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCTCGTAATACGTCCCCTTAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGACAGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGGTCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGTGCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTGGATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAGCGTGGGCCAACGCAAACATTGCCGCTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGCTCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTCAGCAATCTGGCCAAAATCCTCGGAATCCGTCGGGCCCAAGCTAGAAACCTTCGGCGGTCCCATCGGCATTGAGCTTTCCTCGAGTTGGCCATGCAGCATTATGCTGGGTGCTTGGTGGGCCGTTGA]




>consensus_4840#1
CCGCGGACGCGTGGGCAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCTCGTAA
TACGTCCCCTTAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGACAGTGA
CGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGGTCAGA
CCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGTGCCAG
AACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTGGATCT
GATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAGCGTGG
GCCAACGCAAACATTGCCGCTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGCTCCCT
GGGCTCGACCGAGCTGCACAAACTGTTTGTCAGCAATCTGGCCAAAATCCTCGGAATCCG
TCGGGCCCAAGCTAGAAACCTTCGGCGGTCCCATCGGCATTGAGCTTTCCTCGAGTTGGC
CATGCAGCATTATGCTGGGTGCTTGGTGGGCCGTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4840#0      CCGCGCACGTGTATTCTACACAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCT 60
consensus_4840#1      CCGCGGACGCG-----TGGGCAAATTAATAAAAGTGATTGCTTTACTGTATTTCGTGTCT 55
                      ***** *** *     *   ****************************************

consensus_4840#0      CGTAATACGTCCCCTGAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGAC 120
consensus_4840#1      CGTAATACGTCCCCTTAAACGATGGAAGGTGTCGGGCAACTATTTGGGACCCATTTCGAC 115
                      *************** ********************************************

consensus_4840#0      AGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGG 180
consensus_4840#1      AGTGACGATGGTTTACTAACCGCATTTCTTAACAATATAGATGAACATCAATCGTTTTGG 175
                      ************************************************************

consensus_4840#0      TCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGT 240
consensus_4840#1      TCAGACCCTGAAAATGATCTAGACACAATATTCACCAAACTAGGCACCTTGCTAGCCAGT 235
                      ************************************************************

consensus_4840#0      GCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTG 300
consensus_4840#1      GCCAGAACGCGCGATCGTGGTTTAAGAATTCTCATCCACCTGCTGCCCGACTGCCCGCTG 295
                      ************************************************************

consensus_4840#0      GATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAG 360
consensus_4840#1      GATCTGATCGAGGAAAAGGCTCAGTTCTATCTGAACACTTGCACAAAAGTATGCGACCAG 355
                      ************************************************************

consensus_4840#0      CGTGGGCCAACGCAAACATTGCCACTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGC 420
consensus_4840#1      CGTGGGCCAACGCAAACATTGCCGCTGGTGTACAAACTTCTTCAGCAGCTGTTGCATCGC 415
                      *********************** ************************************

consensus_4840#0      TCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTTAGCAATCTGGCCAAAATCCTCG-A 479
consensus_4840#1      TCCCTGGGCTCGACCGAGCTGCACAAACTGTTTGTCAGCAATCTGGCCAAAATCCTCGGA 475
                      *********************************** ********************** *

consensus_4840#0      ATCCGTCGGGCCCAAGCTAGAA-CCGTCGGTGGTCCCATCGGCATTGAGCTT-CCTCGAG 537
consensus_4840#1      ATCCGTCGGGCCCAAGCTAGAAACCTTCGGCGGTCCCATCGGCATTGAGCTTTCCTCGAG 535
                      ********************** ** **** ********************* *******

consensus_4840#0      CTGGCCATGCAGCATTATGCTGG-TGCTTG-TGGGCCGTTGAAAAGCCGCATCGAGACGT 595
consensus_4840#1      TTGGCCATGCAGCATTATGCTGGGTGCTTGGTGGGCCGTTGA------------------ 577
                       ********************** ****** ***********                  

consensus_4840#0      TCCTTTACTCGCTGGTCGATTCTACCGATCGGTTCGTGGTTAACCGTACGGCCAACTGTT 655
consensus_4840#1      ------------------------------------------------------------
                                                                                  

consensus_4840#0      TGCTGCTGCTGCAACAAATCCGAGGCGGAGGACAGCACGGTTCGCTGCATAAGAAAACTT 715
consensus_4840#1      ------------------------------------------------------------