cluster # 4841

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Anopheles gambiae
cluster # 4841 cluster # 4841 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4841#0 length = 1482 sequences # 1

consensus_4841#1 length = 627 sequences # 1
consensus_4841#2 length = 162 sequences # 1

consensusID : consensus_4841#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1482
fasta sequence

                              [GGCAAGAATCCCCCCGAGTGTTTAACTTTACTAGATAGGCGGGNANACGGGAAACGAACTTGAAAAACGAGTGATTTTTTTGTAGTGCAACACGAGTAATGACGAGGCAAACAACAAAACGGACTGACTTACCTTGGACTGCGTGCGTCGTGACTGGTTTCGTTCTNTGGAACGTGCGATGAAAACGTGTTCCGATGAAACCGACACTGGGACGGACGTACGCAACGTTTTATGCGAAACTACCACCTCCATAACCCGGACACACAGCAATAGCATGCGTCCCTACAAATAACCTAACCAAACCCTTTTCCGCTNTCCTCTCCTTTTANTCTACAACCGGCAACTGCGCAGCGGCGCCAACAGNGCAGGNGGCCACANTATACACGCACGACAACAGGTTTTCACACAACACTACAATAAAACCCTTTTTGGGTTCACNAGTCGTCANACCCGGCTTGCCACACAACACCAGCCACAGTCCTTTCTCATTGGGGCGGACGGCAAGTTCCAGTTTCACAACAACAATTTCCTTTCNTGTAAAACTGNAACNGAACCCGAAAGGGCAATTTCACCAGGCGCAAGAAGCAAGGGTTTGGTCCATGGCGTAGCACCCCTAGCAACTAAACTCAATAGTACCCAAGATGAACGNATCAATTACCCGCAACGTTTAACGTGAANCGTAACCACCCGTGGAGCTCAACTTTTCGCCAAGGCCAATGNACCGATTTCCCCTTACAAGGATTTATCCAAGAGACCACAAACCTATAAACCACTGGCCAATCAATTAGGCCTNGACAAGAGCTTTGGCAACATAAGGCGGGCAATTTTGGCGGAGCNTACGAACCGCTGAACGTAGTAAACGAAANCAAAAATCATGAAACCGTGGGCCTTTCGGGGTTTTTGACCCTCATGAAGATNAGACCGTTTGGAGCTTCAGGGACNAANCTTCGANTCAACAAGTAANCTNCTAAAGTTTCAAGGGTGGCTCAACCAGCCACAGCAGCCACACAGTGGGTCCCAAAGGGCCACACANGGGCGCCCATANATCAGTAACAGCTAANCAGACCCCGCTCAAGAACAATGAGTATGACGCGGCAACATAAAACCCAGTGTAGCCCCGGCNACAAGGTGCACCTCCAAAACGACACACGGGGTGGGGNCCCAACACACAACCGNCACACCACAACCNTNTTTTCGTTCACCACCNTTCACTTGAGGGGGGGAGCCCACCCCCCGNGGAGNAAACCCCCAGGGGGACCCCCCCACAAGATTTATCGACATTGAGATGAAGCATGTAGGGGGGCAGGCCAATTTCTGGGAGGGGCATTTTTNCACCCAACGACCTAGNTCAATCCTCCAAACTGGGCTGTTCTTCGGACGAGGGGGCGGGGCACTTCTTCAAACAANCAGCCGCCCAAACACATATACGAAGGTGGGTAGGCACTCATCCCGACCANCTTTTTTACGANCACCATACACCAT]

[+] EMBL AL930755             [GGCAAGAATCCCCCCGAGTGTTTAACTTTACTAGATAGGCGGGNANACGGGAAACGAACTTGAAAAACGAGTGATTTTTTTGTAGTGCAACACGAGTAATGACGAGGCAAACAACAAAACGGACTGACTTACCTTGGACTGCGTGCGTCGTGACTGGTTTCGTTCTNTGGAACGTGCGATGAAAACGTGTTCCGATGAAACCGACACTGGGACGGACGTACGCAACGTTTTATGCGAAACTACCACCTCCATAACCCGGACACACAGCAATAGCATGCGTCCCTACAAATAACCTAACCAAACCCTTTTCCGCTNTCCTCTCCTTTTANTCTACAACCGGCAACTGCGCAGCGGCGCCAACAGNGCAGGNGGCCACANTATACACGCACGACAACAGGTTTTCACACAACACTACAATAAAACCCTTTTTGGGTTCACNAGTCGTCANACCCGGCTTGCCACACAACACCAGCCACAGTCCTTTCTCATTGGGGCGGACGGCAAGTTCCAGTTTCACAACAACAATTTCCTTTCNTGTAAAACTGNAACNGAACCCGAAAGGGCAATTTCACCAGGCGCAAGAAGCAAGGGTTTGGTCCATGGCGTAGCACCCCTAGCAACTAAACTCAATAGTACCCAAGATGAACGNATCAATTACCCGCAACGTTTAACGTGAANCGTAACCACCCGTGGAGCTCAACTTTTCGCCAAGGCCAATGNACCGATTTCCCCTTACAAGGATTTATCCAAGAGACCACAAACCTATAAACCACTGGCCAATCAATTAGGCCTNGACAAGAGCTTTGGCAACATAAGGCGGGCAATTTTGGCGGAGCNTACGAACCGCTGAACGTAGTAAACGAAANCAAAAATCATGAAACCGTGGGCCTTTCGGGGTTTTTGACCCTCATGAAGATNAGACCGTTTGGAGCTTCAGGGACNAANCTTCGANTCAACAAGTAANCTNCTAAAGTTTCAAGGGTGGCTCAACCAGCCACAGCAGCCACACAGTGGGTCCCAAAGGGCCACACANGGGCGCCCATANATCAGTAACAGCTAANCAGACCCCGCTCAAGAACAATGAGTATGACGCGGCAACATAAAACCCAGTGTAGCCCCGGCNACAAGGTGCACCTCCAAAACGACACACGGGGTGGGGNCCCAACACACAACCGNCACACCACAACCNTNTTTTCGTTCACCACCNTTCACTTGAGGGGGGGAGCCCACCCCCCGNGGAGNAAACCCCCAGGGGGACCCCCCCACAAGATTTATCGACATTGAGATGAAGCATGTAGGGGGGCAGGCCAATTTCTGGGAGGGGCATTTTTNCACCCAACGACCTAGNTCAATCCTCCAAACTGGGCTGTTCTTCGGACGAGGGGGCGGGGCACTTCTTCAAACAANCAGCCGCCCAAACACATATACGAAGGTGGGTAGGCACTCATCCCGACCANCTTTTTTACGANCACCATACACCAT]




>consensus_4841#0
GGCAAGAATCCCCCCGAGTGTTTAACTTTACTAGATAGGCGGGNANACGGGAAACGAACT
TGAAAAACGAGTGATTTTTTTGTAGTGCAACACGAGTAATGACGAGGCAAACAACAAAAC
GGACTGACTTACCTTGGACTGCGTGCGTCGTGACTGGTTTCGTTCTNTGGAACGTGCGAT
GAAAACGTGTTCCGATGAAACCGACACTGGGACGGACGTACGCAACGTTTTATGCGAAAC
TACCACCTCCATAACCCGGACACACAGCAATAGCATGCGTCCCTACAAATAACCTAACCA
AACCCTTTTCCGCTNTCCTCTCCTTTTANTCTACAACCGGCAACTGCGCAGCGGCGCCAA
CAGNGCAGGNGGCCACANTATACACGCACGACAACAGGTTTTCACACAACACTACAATAA
AACCCTTTTTGGGTTCACNAGTCGTCANACCCGGCTTGCCACACAACACCAGCCACAGTC
CTTTCTCATTGGGGCGGACGGCAAGTTCCAGTTTCACAACAACAATTTCCTTTCNTGTAA
AACTGNAACNGAACCCGAAAGGGCAATTTCACCAGGCGCAAGAAGCAAGGGTTTGGTCCA
TGGCGTAGCACCCCTAGCAACTAAACTCAATAGTACCCAAGATGAACGNATCAATTACCC
GCAACGTTTAACGTGAANCGTAACCACCCGTGGAGCTCAACTTTTCGCCAAGGCCAATGN
ACCGATTTCCCCTTACAAGGATTTATCCAAGAGACCACAAACCTATAAACCACTGGCCAA
TCAATTAGGCCTNGACAAGAGCTTTGGCAACATAAGGCGGGCAATTTTGGCGGAGCNTAC
GAACCGCTGAACGTAGTAAACGAAANCAAAAATCATGAAACCGTGGGCCTTTCGGGGTTT
TTGACCCTCATGAAGATNAGACCGTTTGGAGCTTCAGGGACNAANCTTCGANTCAACAAG
TAANCTNCTAAAGTTTCAAGGGTGGCTCAACCAGCCACAGCAGCCACACAGTGGGTCCCA
AAGGGCCACACANGGGCGCCCATANATCAGTAACAGCTAANCAGACCCCGCTCAAGAACA
ATGAGTATGACGCGGCAACATAAAACCCAGTGTAGCCCCGGCNACAAGGTGCACCTCCAA
AACGACACACGGGGTGGGGNCCCAACACACAACCGNCACACCACAACCNTNTTTTCGTTC
ACCACCNTTCACTTGAGGGGGGGAGCCCACCCCCCGNGGAGNAAACCCCCAGGGGGACCC
CCCCACAAGATTTATCGACATTGAGATGAAGCATGTAGGGGGGCAGGCCAATTTCTGGGA
GGGGCATTTTTNCACCCAACGACCTAGNTCAATCCTCCAAACTGGGCTGTTCTTCGGACG
AGGGGGCGGGGCACTTCTTCAAACAANCAGCCGCCCAAACACATATACGAAGGTGGGTAG
GCACTCATCCCGACCANCTTTTTTACGANCACCATACACCAT

consensusID : consensus_4841#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [CAAAACAAAACAAATAACCACAAACAAATGTCGCAAACAGTGCAGGAAATCTAAAAAAAGAAAAGAAAACAAAAGTTTAAACACACACCATTAAACAAGCAGAACAGAGTGTACGGAGTAAAGCAGCTTCATTCATACAATCTTCAAACTTCATTACAAACAGTAAAATAGAACAGAAAAAGGAAGACAAGTAAAACATAAAAACAACAGTAAAGATGTAATTTGCGTTGCAAAAGATGATAACTCGAGAAGAAAACAACGTGAAAAGTGAAAAGCAAACATGTAGAGAACACAGAACAAACAACATAAACAGCAACAAAACTTTACTAGATAGGTGGGAACGGGAAACGAATTGAAAAAGAGTGATTTTTTTGTAGTGAAACACGAGTAATGAGAGGCAAACAACAAAACGGACTGATTACTTGGAGCGGCGTCGTGATGGTTTCGTTTTGGAAGTGCGATGAAAAGTGTCCGATGAAACGAATGGGAGGAGAAGCAAGTTTTATGCAAACACCACCTCATAACCCGAAAAGAATAGATGCGCCCACGAAAACCAACCAACCTTTTCGTTCTCTCTTTATCACACGAAGGAGGGAAGAGGAAAAAAAAGTTAAAAAAAACCTTTGT]

[+] EMBL BX608857             [CAAAACAAAACAAATAACCACAAACAAATGTCGCAAACAGTGCAGGAAATCTAAAAAAAGAAAAGAAAACAAAAGTTTAAACACACACCATTAAACAAGCAGAACAGAGTGTACGGAGTAAAGCAGCTTCATTCATACAATCTTCAAACTTCATTACAAACAGTAAAATAGAACAGAAAAAGGAAGACAAGTAAAACATAAAAACAACAGTAAAGATGTAATTTGCGTTGCAAAAGATGATAACTCGAGAAGAAAACAACGTGAAAAGTGAAAAGCAAACATGTAGAGAACACAGAACAAACAACATAAACAGCAACAAAACTTTACTAGATAGGTGGGAACGGGAAACGAATTGAAAAAGAGTGATTTTTTTGTAGTGAAACACGAGTAATGAGAGGCAAACAACAAAACGGACTGATTACTTGGAGCGGCGTCGTGATGGTTTCGTTTTGGAAGTGCGATGAAAAGTGTCCGATGAAACGAATGGGAGGAGAAGCAAGTTTTATGCAAACACCACCTCATAACCCGAAAAGAATAGATGCGCCCACGAAAACCAACCAACCTTTTCGTTCTCTCTTTATCACACGAAGGAGGGAAGAGGAAAAAAAAGTTAAAAAAAACCTTTGT]




>consensus_4841#1
CAAAACAAAACAAATAACCACAAACAAATGTCGCAAACAGTGCAGGAAATCTAAAAAAAG
AAAAGAAAACAAAAGTTTAAACACACACCATTAAACAAGCAGAACAGAGTGTACGGAGTA
AAGCAGCTTCATTCATACAATCTTCAAACTTCATTACAAACAGTAAAATAGAACAGAAAA
AGGAAGACAAGTAAAACATAAAAACAACAGTAAAGATGTAATTTGCGTTGCAAAAGATGA
TAACTCGAGAAGAAAACAACGTGAAAAGTGAAAAGCAAACATGTAGAGAACACAGAACAA
ACAACATAAACAGCAACAAAACTTTACTAGATAGGTGGGAACGGGAAACGAATTGAAAAA
GAGTGATTTTTTTGTAGTGAAACACGAGTAATGAGAGGCAAACAACAAAACGGACTGATT
ACTTGGAGCGGCGTCGTGATGGTTTCGTTTTGGAAGTGCGATGAAAAGTGTCCGATGAAA
CGAATGGGAGGAGAAGCAAGTTTTATGCAAACACCACCTCATAACCCGAAAAGAATAGAT
GCGCCCACGAAAACCAACCAACCTTTTCGTTCTCTCTTTATCACACGAAGGAGGGAAGAG
GAAAAAAAAGTTAAAAAAAACCTTTGT

consensusID : consensus_4841#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 162
fasta sequence

                              [GGCCCCGTGATGGTTCCGTTTGGGAAGCGCGATGAAAAGTGCCCGAAGAAACGAAGGGGAGGAGAAGCAAGTTTTAGGCAAACACCACCCCATAACCCGAAAAGAAGAGATGCGCCCACGAAAACCAACCAACCGGTTCGTGCTCTCTTTATCACACGAAGG]

[+] EMBL BX609640             [GGCCCCGTGATGGTTCCGTTTGGGAAGCGCGATGAAAAGTGCCCGAAGAAACGAAGGGGAGGAGAAGCAAGTTTTAGGCAAACACCACCCCATAACCCGAAAAGAAGAGATGCGCCCACGAAAACCAACCAACCGGTTCGTGCTCTCTTTATCACACGAAGG]




>consensus_4841#2
GGCCCCGTGATGGTTCCGTTTGGGAAGCGCGATGAAAAGTGCCCGAAGAAACGAAGGGGA
GGAGAAGCAAGTTTTAGGCAAACACCACCCCATAACCCGAAAAGAAGAGATGCGCCCACG
AAAACCAACCAACCGGTTCGTGCTCTCTTTATCACACGAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      GGCAAGAATCCCCCCGAGTGTTTAACTTTACTAGATAGGCGGGNANACGGGAAACGAACT 60
                                                                                  

consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      TGAAAAACGAGTGATTTTTTTGTAGTGCAACACGAGTAATGACGAGGCAAACAACAAAAC 120
                                                                                  

consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      GGACTGACTTACCTTGGACTGCGTGCGTCGTGACTGGTTTCGTTCTNTGGAACGTGCGAT 180
                                                                                  

consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      GAAAACGTGTTCCGATGAAACCGACACTGGGACGGACGTACGCAACGTTTTATGCGAAAC 240
                                                                                  

consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      TACCACCTCCATAACCCGGACACACAGCAATAGCATGCGTCCCTACAAATAACCTAACCA 300
                                                                                  

consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      AACCCTTTTCCGCTNTCCTCTCCTTTTANTCTACAACCGGCAACTGCGCAGCGGCGCCAA 360
                                                                                  

consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      CAGNGCAGGNGGCCACANTATACACGCACGACAACAGGTTTTCACACAACACTACAATAA 420
                                                                                  

consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      AACCCTTTTTGGGTTCACNAGTCGTCANACCCGGCTTGCCACACAACACCAGCCACAGTC 480
                                                                                  

consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      CTTTCTCATTGGGGCGGACGGCAAGTTCCAGTTTCACAACAACAATTTCCTTTCNTGTAA 540
                                                                                  

consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      AACTGNAACNGAACCCGAAAGGGCAATTTCACCAGGCGCAAGAAGCAAGGGTTTGGTCCA 600
                                                                                  

consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      TGGCGTAGCACCCCTAGCAACTAAACTCAATAGTACCCAAGATGAACGNATCAATTACCC 660
                                                                                  

consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      GCAACGTTTAACGTGAANCGTAACCACCCGTGGAGCTCAACTTTTCGCCAAGGCCAATGN 720
                                                                                  

consensus_4841#1      ------------------------------------------------------------
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      ACCGATTTCCCCTTACAAGGATTTATCCAAGAGACCACAAACCTATAAACCACTGGCCAA 780
                                                                                  

consensus_4841#1      ----------CAAAACAAAACAAATAACCACAAA-------CAAATGTCGCAAACAGTGC 43
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      TCAATTAGGCCTNGACAAGAGCTTTGGCAACATAAGGCGGGCAATTTTGGCGGAGCNTAC 840
                                                                                  

consensus_4841#1      AGGAAATCTAAAAAAAGAAAAGAAAACAAAAGTTTAAACACACACCATTAAACAAGCAGA 103
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      GAACCGCTGAACGTAGTAAACGAAANCAAAAATCATGAAACCGTGGGCCTTTCGGGGTTT 900
                                                                                  

consensus_4841#1      ACAGAGTGTACGGAG-TAAAGCAGCTTCATTCATACAATCTTCAAACTTCATTACAAACA 162
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      TTGACCCTCATGAAGATNAGACCGTTTGGAGCTT-CAGGGACNAANCTTCGANTCAACAA 959
                                                                                  

consensus_4841#1      GTAAAATAGAACAGAA--AAAGGAAGACAAGTAAAACATAAAAACAACAGTAAAGATGT- 219
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      GTAANCTNCTAAAGTTTCAAGGGTGGCTCAACCAGCCACAGCAGCCACACAGTGGGTCCC 1019
                                                                                  

consensus_4841#1      AATTTGCGTTGCAAAAGA--TGATAACTCGAGAAGA---AAACA-ACGTGAAAAGTGAAA 273
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      AAAGGGCCACACANGGGCGCCCATANATCAGTAACAGCTAANCAGACCCCGCTCAAGAAC 1079
                                                                                  

consensus_4841#1      AGCAAACATGTAGAGAACACAGAACAAACAACATAAAC--AGCAACAAA----ACTTT-- 325
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      AATGAGTATGACGCGGCAACATAAAACCCAGTGTAGCCCCGGCNACAAGGTGCACCTCCA 1139
                                                                                  

consensus_4841#1      --ACTAGATA---GGTGGGAACGGGAAACG-AATTGAAAAAGAGTGATTTTTTTGTAGTG 379
consensus_4841#2      ------------------------------------------------------------
consensus_4841#0      AAACGACACACGGGGTGGGGNCCCAACACACAACCGNCACACCACAACCNTNTTTTCGTT 1199
                                                                                  

consensus_4841#1      AAACACGAGTAATGAGAGGCAAACAACAAA------ACGGACTGATTACTTGGAGCGGCG 433
consensus_4841#2      --------------------------------------------------------GGCC 4
consensus_4841#0      CACCACCNTTCACTTGAGGGGGGGAGCCCACCCCCCGNGGAGNAAACCCCCAGGGGGACC 1259
                                                                              * * 

consensus_4841#1      TCGTGATGGTTTCGTTTTGGAAGTGCGATGAAAAGTGTCCGATGAAA---CGAATGGGAG 490
consensus_4841#2      CCGTGATGGTTCCGTTTGGGAAGCGCGATGAAAAGTGCCCGAAGAAA---CGAAGGGGAG 61
consensus_4841#0      CCCCCACAAGATT-TATCGACATTGAGATGAAGCATGTAGGGGGGCAGGCCAATTTCTGG 1318
                       *   *        * * *  *  * ******   **   *  *  *   * *      *

consensus_4841#1      GAGAAGCAAGTTTTATGCAAACA--CCACCTCA-TAACCCGAAAAGAATAGATGCGCCCA 547
consensus_4841#2      GAGAAGCAAGTTTTAGGCAAACA--CCACCCCA-TAACCCGAAAAGAAGAGATGCGCCCA 118
consensus_4841#0      GAGGGGCATTTTTNCACCCAACGACCTAGNTCAATCCTCCAAACTGGGCTGTTCTTCGGA 1378
                      ***  ***  ***    * ***   * *   ** *   ** **  *    * *   *  *

consensus_4841#1      CGAAAAC-CAACCAACCTTTTCGTTCTCTC--TTTATCACACGAAGGAGGGAAGAGGAAA 604
consensus_4841#2      CGAAAAC-CAACCAACCGGTTCGTGCTCTC--TTTATCACACGAAGG------------- 162
consensus_4841#0      CGAGGGGGCGGGGCACTTCTTCAAACAANCAGCCGCCCAAACACATATACGAAGGTGGGT 1438
                      ***     *     **   ***   *   *       ** **  *               

consensus_4841#1      AAAAAGTTAA---AAAAAACCTTTGT------------------ 627
consensus_4841#2      --------------------------------------------
consensus_4841#0      AGGCACTCATCCCGACCANCTTTTTTACGANCACCATACACCAT 1482