cluster # 4855

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Anopheles gambiae
cluster # 4855 cluster # 4855 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4855#0 length = 1040 sequences # 3

consensus_4855#1 length = 576 sequences # 1

consensusID : consensus_4855#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1040
fasta sequence

                              [CTTCATTTCCTGTACTTATGGTGTGCCGCAAGGCCTCCGCTTAGGCACATGTAACAGCCCGAACATTAGCAAGACACACTTCAAAAGATTCAGGAAGTTGTACCATGGTTTTATTACCTTACCAACATCGCACCTTTTCTTGCTTACTTTCCTTCCCCCGTTGACAGATCCAGTACGTTCAGGAGCAGCAGTACCAGCAGCCCCAGCCCCAGCTGAAGGTGTCCAAGCCCCGACCCCAGTACCTGCAGGGAGGTCAAAAGCAGCCGCTGGAAGAAGAACAGGAGGACTATGATGCCAACCCTTCGTACCAGTTCGGTTTCGACGTGAAGGACGATGAGTTCACCAACTACCAGAACCGCAAGGAGCAGCGTGACGGAAACGTGATCAAGGGCAGCTACTCCGTGGTCGACTCGGACGGATTCATCCGCACCGTCACGTACACCGCCGACCCGAAGGAAGGCTTTAAGGCCGAGGTCAGCCGCCAGCCGACCGACATCGTGGTCAAGATCCCGACGCCGGCACCCCAGTCCCAGCACGACCGTTTCGCTAGTCAGCCCCAGTCGGCCGGTGCGTACCGTGTGCAGCAGCAGCCCCAGCAGCAGCAGCAGGCTCAGCCCCGACCAAGACCGCAGGAGTACTCCCAGTACCAGTAAGGCGGATCAGCAGGGTGGATCTCCTTTTTCTCCTCAACCATCACTACCACGTAATTTATGTTGTGTTAGAGACAGTGTCGTGGACAGGCCCTGTCCATGCGTTCGGTCAAACCTAGACCACAGACTGAATGTGGAAGTATCGTAGAAATCGCCCTTCCGTGCGTGCTTCCTGGTAGTGATCGTCTCAAACCCATTTGCTCGGCACCACTAGAGCTAGCAAAGTGAAGGTGTCCATGCGTGTGAAGATGCGCAACTCCTAAGAAATTGGCGTCCGTGTGAGCTTCTGTCGCTCGCACGGCCGACCCTATCGCCTGTGGGCACACTATTCTCACTTGCCCTTTATCGTAAAGTCATGATATTTAAATAAAAAAAACACAAAACTGTCAA]

[+] EMBL BX625314             [CTTCATTTCCTGTACTTATGGTGTGCCGCAAGGCCTCCGCTTAGGCACATGTAACAGCCCGAACATTAGCAAGACACACTTCAAAAGATTCAGGAAGTTGTACCATGGTTTTATTACCTTACCAACATCGCACCTTTTCTTGCTTACTTTCCTTCCCCCGTTGACAGATCCAGTACGTTCAGGAGCAGCAGTACCAGCAGCCCCAGCCCCAGCTGAAGGTGTCCAAGCCCCGACCCCAGTACCTGCAGGGAGGTCAAAAGCAGCCGCTGGAAGAAGAACAGGAGGACTATGATGCCAACCCTTCGTACCAGTTCGGTTTCGACGTGAAGGACGATGAGTTCACCAACTACCAGAACCGCAAGGAGCAGCGTGACGGAAACGTGATCAAGGGCAGCTACTCCGTGGTCGACTCGGACGGATTCATCCGCACCGTCACGTACACCGCCGACCCGAAGGAAGGCTTTAAGGCCGAGGTCAGCCGCCAGCCGACCGACATCGTGGTCAAGATCCCGACGCCGGCACCCCAGTCCCAGCACGACCGTTTCGCTAGTCAGCCCCAGTCGGCCGGTGCGTACCGTGTGCAGCAGCAGCCCCAGCAGCAGCAGCAGGCTCAGCCCCGACCAAGACCGCAGGAGTACTCCCAGTACCAGTAAGGCGGATCAGCAGGGTGGATCTCCTTTTTCTCCTC ANCATCACTACCACGTAATTTAT                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX621913             [                                                                                                                                                                                                                                                                                                                                                            ACCAGAACCGCAAGGAGCAGCGTGACGGAAACGTGATCAAGGGCAGCTACTCCGTGGTCGACTCGGACGGATTCATCCGCACCGTCACGTACACCGCCGACCCGAAGGAAGGCTTTAAGGCCGAGGTCAGCCGCCAGCCGACCGACATCGTGGTCAAGATCCCGACGCCGGCACCCCAGTCCCAGCACGACCGTTTCGCTAGTCAGCCCCAGTCGGCCGGTGCGTACCGTGTGCAGCAGCAGCCCCAGCAGCAGCAGCAGGCTCAGCCCCGACCAAGACCGCAGGAGTACTCCCAGTACCAGTAAGGCGGATCAGCAGGGTGGATCTCCTTTTTCTCCTCAACCATCACTACCACGTAATTTATGTTGTGTTAGAGACAGTGTCGTGGACAGGCCCTGTCCATGCGTTCGGTCAAACCTAGACCACAGACTGAATGTGGAAGTATCGTAGAAATCGCCCTTCCGTGCGTGCTTCCTGGTAGTGATCGTCTCAAACCCATTTGCTCGGCACCACTAGAGCTAGCAAAGTGAAGGTGTCCATGCGTGTGAAGATGCGCAACTCCTAAGAAATTGGCGTCCGTGTGAGCTTCTGTCGCTCGCACGGCCGACCCTATCGCCTGTGGGCACACTATTCTCACTTGCCCTTTATCGTAAAGTCATGATATTTAAATAAAAAAAACACAAAACTGTCAA]
[+] EMBL BX627200             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAGGCTTTAAGGCCGAGGTCAGCCGCCAGCCGACCGACATCGTGGTCAAGATCCCGACGCCGGCACCCCAGTCCCAGCACGACCGTTTCGCTAGTCAGCCCCAGTCGGCCGGTGCGTACCGTGTGCAGCAGCAGCCCCAGCAGCAGCAGCAGGCTCAGCCCCGACCAAGACCGCANGAGTACTCCCAGTACCAGTAAGGCGGATCAGCAGGGTGGATCTCCTTTTTCTCCTCAACCATCACTACCACGTAATTTATGTTGTGTTAGAGACAGTGTCGTGGACAGGCCCTGTCCATGCGTTCGGTCAAACCTAGACCACAGACTGAATGTGGAAGTATCGTAGAAATCGCCCTTCCGTGCGTGCTTCCTGGTAGTGATCGTCTCAAACCCATTTGCTCGGCACCACTAGAGCTAGCAAAGTGAAGGTGTCCATGCGTGTGAAGATGCGCAACTCCTAAGAAATTGGCGTCCGTGTGAGCTTCTGTCGCTCGCACGGNCGACCCTATCGCCTGTGGGCACACTATTCTCACTTGCCCTTTATCGTAAAGTCATGATATTTAAATAAAAAAAACACCAAACTGT   ]




>consensus_4855#0
CTTCATTTCCTGTACTTATGGTGTGCCGCAAGGCCTCCGCTTAGGCACATGTAACAGCCC
GAACATTAGCAAGACACACTTCAAAAGATTCAGGAAGTTGTACCATGGTTTTATTACCTT
ACCAACATCGCACCTTTTCTTGCTTACTTTCCTTCCCCCGTTGACAGATCCAGTACGTTC
AGGAGCAGCAGTACCAGCAGCCCCAGCCCCAGCTGAAGGTGTCCAAGCCCCGACCCCAGT
ACCTGCAGGGAGGTCAAAAGCAGCCGCTGGAAGAAGAACAGGAGGACTATGATGCCAACC
CTTCGTACCAGTTCGGTTTCGACGTGAAGGACGATGAGTTCACCAACTACCAGAACCGCA
AGGAGCAGCGTGACGGAAACGTGATCAAGGGCAGCTACTCCGTGGTCGACTCGGACGGAT
TCATCCGCACCGTCACGTACACCGCCGACCCGAAGGAAGGCTTTAAGGCCGAGGTCAGCC
GCCAGCCGACCGACATCGTGGTCAAGATCCCGACGCCGGCACCCCAGTCCCAGCACGACC
GTTTCGCTAGTCAGCCCCAGTCGGCCGGTGCGTACCGTGTGCAGCAGCAGCCCCAGCAGC
AGCAGCAGGCTCAGCCCCGACCAAGACCGCAGGAGTACTCCCAGTACCAGTAAGGCGGAT
CAGCAGGGTGGATCTCCTTTTTCTCCTCAACCATCACTACCACGTAATTTATGTTGTGTT
AGAGACAGTGTCGTGGACAGGCCCTGTCCATGCGTTCGGTCAAACCTAGACCACAGACTG
AATGTGGAAGTATCGTAGAAATCGCCCTTCCGTGCGTGCTTCCTGGTAGTGATCGTCTCA
AACCCATTTGCTCGGCACCACTAGAGCTAGCAAAGTGAAGGTGTCCATGCGTGTGAAGAT
GCGCAACTCCTAAGAAATTGGCGTCCGTGTGAGCTTCTGTCGCTCGCACGGCCGACCCTA
TCGCCTGTGGGCACACTATTCTCACTTGCCCTTTATCGTAAAGTCATGATATTTAAATAA
AAAAAACACAAAACTGTCAA

consensusID : consensus_4855#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [GCAAGATCCGCACGAGTGGANGATCGTCGCATCGATAGGTCCGATACCATACCCAAGTGCTCCCAGAGTGGCAGTAGTAGTTCACCTAGTCGGTGAAAGTGAATTGTTTGCTGTGTCAGTAGAACGCAAGCGTGTGCGTGCGTGTTTGTGTGTGTGTATATCGAGCCGGTGTGCAGTGTTACCAGTGTGCCACATCATGCGTGCCTTCGTAGTAGCGACGATACTTTGCGTTGGATTTGTGTCCGCGTACCCGCAGCAAGCGGTCGATCCGGCGTATCTGCGCCAGTACTATCAGCAGATCGCACAGGCCGCTGGTGCGCAGAATGCGGCCCAGGGCCGTGCTGATGCTACGCCAATCCACGAGCAGGGCGCCCAGGAGCAGCGAACACATCCCGCAGTATCTGCGCACAGGGCCAGCCACAGCGTACCCAGTACCAGCAGCCACAGGCCAGACAGTACCAGCCCCAGTACCAGCCTCAGCAGATCCAGTACGTTCAGGAGCAGCAGTNACCAGCAGCCCCAGGCGCCAGCTGAAGGTGTCCAAGCACCGAACCCAGTACCTGCAGGGAGGTCAAA]

[+] EMBL BX466126             [GCAAGATCCGCACGAGTGGANGATCGTCGCATCGATAGGTCCGATACCATACCCAAGTGCTCCCAGAGTGGCAGTAGTAGTTCACCTAGTCGGTGAAAGTGAATTGTTTGCTGTGTCAGTAGAACGCAAGCGTGTGCGTGCGTGTTTGTGTGTGTGTATATCGAGCCGGTGTGCAGTGTTACCAGTGTGCCACATCATGCGTGCCTTCGTAGTAGCGACGATACTTTGCGTTGGATTTGTGTCCGCGTACCCGCAGCAAGCGGTCGATCCGGCGTATCTGCGCCAGTACTATCAGCAGATCGCACAGGCCGCTGGTGCGCAGAATGCGGCCCAGGGCCGTGCTGATGCTACGCCAATCCACGAGCAGGGCGCCCAGGAGCAGCGAACACATCCCGCAGTATCTGCGCACAGGGCCAGCCACAGCGTACCCAGTACCAGCAGCCACAGGCCAGACAGTACCAGCCCCAGTACCAGCCTCAGCAGATCCAGTACGTTCAGGAGCAGCAGTNACCAGCAGCCCCAGGCGCCAGCTGAAGGTGTCCAAGCACCGAACCCAGTACCTGCAGGGAGGTCAAA]




>consensus_4855#1
GCAAGATCCGCACGAGTGGANGATCGTCGCATCGATAGGTCCGATACCATACCCAAGTGC
TCCCAGAGTGGCAGTAGTAGTTCACCTAGTCGGTGAAAGTGAATTGTTTGCTGTGTCAGT
AGAACGCAAGCGTGTGCGTGCGTGTTTGTGTGTGTGTATATCGAGCCGGTGTGCAGTGTT
ACCAGTGTGCCACATCATGCGTGCCTTCGTAGTAGCGACGATACTTTGCGTTGGATTTGT
GTCCGCGTACCCGCAGCAAGCGGTCGATCCGGCGTATCTGCGCCAGTACTATCAGCAGAT
CGCACAGGCCGCTGGTGCGCAGAATGCGGCCCAGGGCCGTGCTGATGCTACGCCAATCCA
CGAGCAGGGCGCCCAGGAGCAGCGAACACATCCCGCAGTATCTGCGCACAGGGCCAGCCA
CAGCGTACCCAGTACCAGCAGCCACAGGCCAGACAGTACCAGCCCCAGTACCAGCCTCAG
CAGATCCAGTACGTTCAGGAGCAGCAGTNACCAGCAGCCCCAGGCGCCAGCTGAAGGTGT
CCAAGCACCGAACCCAGTACCTGCAGGGAGGTCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4855#0      CTTCATTTCCTGTACTTATGGTGTGCCGCAAGGCCTCCGCTTAGGCACATGTAACAGCCC 60
consensus_4855#1      ------------------------------------------------------------
                                                                                  

consensus_4855#0      GAACATTAGCAAGACACACTTCAAAAGATTCAGGAAGTTGTACCATGGTTTTATTACCTT 120
consensus_4855#1      -----------------------------GCAAGAT-CCGCACGAGTGGANGATCGTCGC 30
                                                    ** **    * ** *  *    **   *  

consensus_4855#0      ACCAACATCGCACCTTTTCTTGCTTACTTTCCTTCCCCCGTTGACAGATCCAGTACGTTC 180
consensus_4855#1      ATCGATAG-GTCCGATACCATACCCAAGTGC--TCCCAGAGTGGCAGTAGTAGTTCACCT 87
                      * * * *  *  *  *  * * *  *  * *  ****    ** ***    *** *    

consensus_4855#0      AGGAGCAGCAGTACCAGCAGCCCCAGCCCCAGCTGAAGGTGTCCAAGCCCCGACCCCAGT 240
consensus_4855#1      AGTCGGTGAAAGTGAATTGTTTGCTGTGTCAGTAGAACG----CAAGCGTGTGCGTGCGT 143
                      **  *  * *     *       * *   ***  *** *    *****     *    **

consensus_4855#0      ACCTGCAGGGAGGTCAAAAGCAGCCGCTG-GAAGAAGAACAGGAGGACTATGATGC-CAA 298
consensus_4855#1      GTTTGTGTGTGTGTATATCG-AGCCGGTGTGCAGTGTTACCAGTGTGCCACATCATGCGT 202
                         **   *   **  *  * ***** ** * **    **  * *  * *       *  

consensus_4855#0      CCCTTCGTACCAGTTCGGTTTCGACGTGAAGGACGATGAGTTCACCAACTACCAG-AACC 357
consensus_4855#1      GCCTTCGTAGTAGCGACGATACTTTGCGTTGGATT-TGTGTCCGCGTACCCGCAGCAAGC 261
                       ********  **    * * *   * *  ***   ** ** * *  **   *** ** *

consensus_4855#0      GCAAGGAGCAGCGTGACGGAAACGTGATCAAGGGCAGCTACTCCGTGGTCGACTCGGACG 417
consensus_4855#1      GGTCGATCCGGCGTATCTGCGCCAGTACTATCAGCAG--ATCGCACAGGCCGCTGGTGCG 319
                      *   *   * ****  * *   *   *  *   ****  *   *   * *  ** *  **

consensus_4855#0      GATTCATCCGCACCGTCACGTACACCGCCGACCCGAAGGAAGGCTTTAAGGCCGAGGTCA 477
consensus_4855#1      CAGAATGCGGCCCAGGGCCGT-----GCTGATGCTACGCCAATCCACGAGCAGGGCGCCC 374
                       *     * ** * *   ***     ** **  * * *  *  *    **   *  * * 

consensus_4855#0      GCCGCCAGCCGACCGACATCGTGGTCAAGATCCCGACGCCGGCACCCCAGTCCCAGCACG 537
consensus_4855#1      AGGAGCAGCGAAC--ACATCCCG--CAGTATCTGCGCACAGGG---CCAGCCACAGCGTA 427
                           ****  **  *****  *  **  ***    * * **    **** * ****   

consensus_4855#0      ACCGTTTCGCTAGTCAGCCCCAGTCGGCCGGTGCGTACCGTGTGCAGCAGCAGCCCCAGC 597
consensus_4855#1      CCCAGT--ACCAG-CAGCCACAG---GCCAGACAGTACCAGCCCCAGTACCAGCCTCAGC 481
                       **  *   * ** ***** ***   *** *   *****     *** * ***** ****

consensus_4855#0      AGCAGCAGCAGGCTCAGCCCCGACCAAGACCGCAGGAGTACTCCCAGTACCAGTAAGGCG 657
consensus_4855#1      AGATCCAGTACGTTCAGGAGCAGCAGTNAC--CAGCAG--CCCCAGGCGCCAGCTGAAGG 537
                      **   *** * * ****   *  *    **  *** **  * **  *  ****      *

consensus_4855#0      GATCAGCAGGGTGGATCTCCTTTTTCTCCTCAACCATCACTACCACGTAATTTATGTTGT 717
consensus_4855#1      TGTCCAAGCACCGAACC--CAGTACCTGCAGGGAGGTCAAA------------------- 576
                        **        * * *  *  *  ** *       ***                     

consensus_4855#0      GTTAGAGACAGTGTCGTGGACAGGCCCTGTCCATGCGTTCGGTCAAACCTAGACCACAGA 777
consensus_4855#1      ------------------------------------------------------------
                                                                                  

consensus_4855#0      CTGAATGTGGAAGTATCGTAGAAATCGCCCTTCCGTGCGTGCTTCCTGGTAGTGATCGTC 837
consensus_4855#1      ------------------------------------------------------------
                                                                                  

consensus_4855#0      TCAAACCCATTTGCTCGGCACCACTAGAGCTAGCAAAGTGAAGGTGTCCATGCGTGTGAA 897
consensus_4855#1      ------------------------------------------------------------
                                                                                  

consensus_4855#0      GATGCGCAACTCCTAAGAAATTGGCGTCCGTGTGAGCTTCTGTCGCTCGCACGGCCGACC 957
consensus_4855#1      ------------------------------------------------------------
                                                                                  

consensus_4855#0      CTATCGCCTGTGGGCACACTATTCTCACTTGCCCTTTATCGTAAAGTCATGATATTTAAA 1017
consensus_4855#1      ------------------------------------------------------------
                                                                                  

consensus_4855#0      TAAAAAAAACACAAAACTGTCAA 1040
consensus_4855#1      -----------------------