cluster # 4856

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Anopheles gambiae
cluster # 4856 cluster # 4856 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4856#0 length = 588 sequences # 3

consensus_4856#1 length = 575 sequences # 1

consensusID : consensus_4856#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 588
fasta sequence

                              [GGTGTATTAGTTTTTTTATGCTTAAACATAGGAACCTATGACAAGTAATGCTATACCTGATCAACATCATTCTTTCCTCTATTGAGCGCATCGAGCCATTGATTGCAAAATAGTTTTATGTGTTGCAAGAAGCGAAGGAACCCAGCCAACGATCTGGGGGATCCAAGTTGCCATCATAATTCCTACTACTTTCGTCGTTATCGGACAATGATCCAGCC-GGTGATAGGGGGCAACTTTTTCCTTCGCTCGTTTTCATACTGCGTTGTATGAAGTTGAGCATCTTTTGTACTTTGGCGCAATTAGGACTTTTCTTCACCGTTGGTTGGCACTCTACTATCGGCTCTTCGACATTTTTTCGTTGCACTAGAGTGTTTAGTGTGCTCACAAATTCTAGCGGTTTTATTTTCTTATTTTTTACTAGCGCTCTCGCTTGCTTCAATGCCAAGCTACCGCTATGCGATGGCAAACCAATCGGCAACACCGCTGTTTTGCTTTTCTTATGCTTACTGCCTTTCGCGACGGTTGTGTTGCTTATGGTTTTCGTCATCGCCCCTCCCATGTTCTTTATCCTTAGTTTTGTAGGAGTCA]

[+] EMBL CNS09NL2             [GGTGTATTAGTTTTTTTATGCTTAAACATAGGAACCTATGACAAGTAATGCTATACCTGATCAACATCATTCTTTCCTCTATTGAGCGCATCGAGCCATTGATTGCAAAATAGTTTTATGTGTTGCAAGAAGCGAAGGAACCCAGCCAACGATCTGGGGGATCCAAGTTGCCATCATAATTCCTACTACTTTCGTCGTTATCGGACAATGATCCAGCCGGGTGATAGGGGGCAACTTTTTCCTTCGCTCGTT                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CNS09OAJ             [                 ATGCTTAAACATAGGAACCTATGACAAGTAATGCTATACCTGATCAACATCATTCTTTCCTCTATTGAGCGCATCGAGCCATTGATTGCAAAATAGTTTTATGTGTTGCAAGAAGCGAAGGAACCCAGCCAACGATCTGGGGGATCCAAGTTGCCATCATAATTCCTACTACTTTCGTCGTTATCGGACAATGATCCAGCC GGTGATAGGGGGCAACTTTTTCCTTCGCTCGTTTTCATACTGCGTTGTATGAAGTTGAGCATCTTTTGTACTTTGGCGCAATTAGGACTTTTCTTCACCGTTGGTTGGCACTCTACTATCGGCTCTTCGACATTTTTTCGTTGCACTAGAGTGTTTAGTGTGCTCACAAATTCTAGCGGTTTTATTTTCTTATTTTTTACTAGCGCTCTCGCTTGCTTCAATGCCAAGCTACCGCTATGCGATGGCAAACCAATCGGCAACACCGCTGTTTTGCTTTTCTTATGCTTACTGCCTTTCGCGACGGTTGTGTTGCTTATGGTTTTCGTCATCGCCCCTCCCATGTTCTTTATCCTTAGTTTTGTAGGAGTCA]
[+] EMBL CNS09EGH             [                   GCTTAAACATAGGAACCTATGACAAGTAATGCTATACCTGATCAACATCATTCTTTCCTCTATTGAGCGCATCGAGCCATTGATTGCAAAATAGTTTTATGTGTTGCAAGAAGCGAAGGAACCCAGCCAACGATCTGGGGGATCCAAGTTGCCATCATAATTCCTACTACTTTCGTCGTTATCGGACAATGATCCAGCC GGTGATAGGGGGCAACTTTTTCCTTCGCTCGTTTTCATACTGCGTTGTATGAAGTTGAGCATCTTTTGTACTTTGGCGCAATTAGGACTTTTCTTCACCGTTGGTTGGCACTCTACTATCGGCTCTTCGACATTTTTTCGTTGCACTAGAGTGTTTAGTGTGCTCACAAATTCTAGCGGTTTTATTTTCTTATTTTTAACTAGCGCTCTCGCTTGCTTCAATGCCAAGCTAC                                                                                                                                          ]




>consensus_4856#0
GGTGTATTAGTTTTTTTATGCTTAAACATAGGAACCTATGACAAGTAATGCTATACCTGA
TCAACATCATTCTTTCCTCTATTGAGCGCATCGAGCCATTGATTGCAAAATAGTTTTATG
TGTTGCAAGAAGCGAAGGAACCCAGCCAACGATCTGGGGGATCCAAGTTGCCATCATAAT
TCCTACTACTTTCGTCGTTATCGGACAATGATCCAGCCGGTGATAGGGGGCAACTTTTTC
CTTCGCTCGTTTTCATACTGCGTTGTATGAAGTTGAGCATCTTTTGTACTTTGGCGCAAT
TAGGACTTTTCTTCACCGTTGGTTGGCACTCTACTATCGGCTCTTCGACATTTTTTCGTT
GCACTAGAGTGTTTAGTGTGCTCACAAATTCTAGCGGTTTTATTTTCTTATTTTTTACTA
GCGCTCTCGCTTGCTTCAATGCCAAGCTACCGCTATGCGATGGCAAACCAATCGGCAACA
CCGCTGTTTTGCTTTTCTTATGCTTACTGCCTTTCGCGACGGTTGTGTTGCTTATGGTTT
TCGTCATCGCCCCTCCCATGTTCTTTATCCTTAGTTTTGTAGGAGTCA

consensusID : consensus_4856#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [CCGAGCAGGCGGGCCAGCTGTGTTGGCTCAAGAGGAGCTGCCTACACAGCAGGCGGGCCAGCTCCTATTTCCTGCCACGCCGGACATGACGCAAAACGTGACCCAGGCCCGTCAAAGTGCAGGCCACGGAAGGTAGAGCGTGATGGTCCACATAGACAAACACAACCACTTCGGCGATAACAGTCAGTGCTGTGACGGGGGTGCGATTCTATTTATGTTTCTCGAGAAAGTTGCAGAATTACGACGGGAGAGAAAACAAAGAAACGGCTCACATACATACACACATACATGCACACAAACTCTAACGCACTTGGACGGACGAACGGCAAACACACACTTCTTACGAACGCGATCAACTCAAGTGTATATTGCAAGAACATTGGTTTAGAGATGAAATTTCGACGATGACAACTGCACGGACTAACTATTTGCTTGCGAAACAACAGCAACGCCAATGATAACCAGCCGAGAGCGACGGTTTCCTCTCGATCGAACACCACCGTCGATCCCGATCGATCATCTGAACATGCGATGCACCGAAACTCCACCGACAGCGACGAGCTTCGGGGCAATTT]

[+] EMBL BM611289             [CCGAGCAGGCGGGCCAGCTGTGTTGGCTCAAGAGGAGCTGCCTACACAGCAGGCGGGCCAGCTCCTATTTCCTGCCACGCCGGACATGACGCAAAACGTGACCCAGGCCCGTCAAAGTGCAGGCCACGGAAGGTAGAGCGTGATGGTCCACATAGACAAACACAACCACTTCGGCGATAACAGTCAGTGCTGTGACGGGGGTGCGATTCTATTTATGTTTCTCGAGAAAGTTGCAGAATTACGACGGGAGAGAAAACAAAGAAACGGCTCACATACATACACACATACATGCACACAAACTCTAACGCACTTGGACGGACGAACGGCAAACACACACTTCTTACGAACGCGATCAACTCAAGTGTATATTGCAAGAACATTGGTTTAGAGATGAAATTTCGACGATGACAACTGCACGGACTAACTATTTGCTTGCGAAACAACAGCAACGCCAATGATAACCAGCCGAGAGCGACGGTTTCCTCTCGATCGAACACCACCGTCGATCCCGATCGATCATCTGAACATGCGATGCACCGAAACTCCACCGACAGCGACGAGCTTCGGGGCAATTT]




>consensus_4856#1
CCGAGCAGGCGGGCCAGCTGTGTTGGCTCAAGAGGAGCTGCCTACACAGCAGGCGGGCCA
GCTCCTATTTCCTGCCACGCCGGACATGACGCAAAACGTGACCCAGGCCCGTCAAAGTGC
AGGCCACGGAAGGTAGAGCGTGATGGTCCACATAGACAAACACAACCACTTCGGCGATAA
CAGTCAGTGCTGTGACGGGGGTGCGATTCTATTTATGTTTCTCGAGAAAGTTGCAGAATT
ACGACGGGAGAGAAAACAAAGAAACGGCTCACATACATACACACATACATGCACACAAAC
TCTAACGCACTTGGACGGACGAACGGCAAACACACACTTCTTACGAACGCGATCAACTCA
AGTGTATATTGCAAGAACATTGGTTTAGAGATGAAATTTCGACGATGACAACTGCACGGA
CTAACTATTTGCTTGCGAAACAACAGCAACGCCAATGATAACCAGCCGAGAGCGACGGTT
TCCTCTCGATCGAACACCACCGTCGATCCCGATCGATCATCTGAACATGCGATGCACCGA
AACTCCACCGACAGCGACGAGCTTCGGGGCAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4856#0      -------GGTGTATTAGTTTTTTTATGCTTAAACATAGGAACCTATGACAAGTAATGCTA 53
consensus_4856#1      CCGAGCAGGCGGGCCAGCTGTGTTG-GCTCAAGAGGAGCTGCCTAC-ACAGCAGGCG--- 55
                             ** *    ** * * **  *** **    **   ****  ***      *   

consensus_4856#0      TACCTGATCAACATCATTCTTTCCTCTATTGAGCGCATCGAGCCATTGATTGCAAAATAG 113
consensus_4856#1      -----GGCCAGC----TCCTATTTCCTGCCACGCCGGACATGACGCAAAACGTGACCCAG 106
                           *  ** *    * ** *   **     **    *  * *    *  *  *   **

consensus_4856#0      TTTTAT-GTGTTGCAAGAAGCGAAGGAACCCAGCCAACGATCTGGGGGATCCAA-GTTGC 171
consensus_4856#1      GCCCGTCAAAGTGCAGGCCACGGAAGGTAGAGCGTGATGGTCCACATAGACAAACACAAC 166
                           *     **** *   ** * *          * * **        * **     *

consensus_4856#0      CATCATAATTCCTACTACTTTCGTCGTTATCGGACAATGATCCAGCCGGTGATAGG-GGG 230
consensus_4856#1      CACTTCGGCGATAACAGTCAGTGCTGTGACGGGGGTGCGATTCTATTTATGTTTCTCGAG 226
                      **           **       *  ** *  **     *** *      ** *    * *

consensus_4856#0      CAACTTTTTCCTTCGCTCGTTTTCATACTGCGTTGTATGAAGTTGAGCATCTTTTGTACT 290
consensus_4856#1      AAAGTTGCAGAATTACGACGGGAGAGAAAACAAAGAAACGGCTCACATA-CATACACACA 285
                       ** **      *  *        * *   *   * *     *     * * *    ** 

consensus_4856#0      TTGGCGCAATTAGGACTTTTCTTCACCGTTGGTTGGCACTCTACTATCGGCTCTTCGACA 350
consensus_4856#1      TACATGCACACAA-ACTCTAACGCACT-TGGACGGACGAACGGCAAACACACACTTCTTA 343
                      *    ***   *  *** *    ***  * *   * *   *  * * *      *    *

consensus_4856#0      TTTTTTCGTTGCACTAGAGTGTTTAGTGTGCTCACAA-ATTCTAGCGGTTTTATTTTCTT 409
consensus_4856#1      CGAACGCGATCAACTCAAGTGTATATTGCAAGAACATTGGTTTAGAGATGAAATTTCGAC 403
                            ** *  ***  ***** ** **     ***    * *** * *   ****    

consensus_4856#0      ATTTTTTACTA-GCGCTCTCGCTTGCTTCAATGCCAAGCTACCGCTATGCGATGGCAAAC 468
consensus_4856#1      GATGACAACTGCACGGACTAACT-ATTTGCTTGCGAAACAACAGCAACGCCAATGATAAC 462
                        *    ***   **  **  **   **   *** ** * ** ** * ** *  *  ***

consensus_4856#0      CAATCGGCAACACCGCTGTTTTGCTTTTCTTATGCTTACTGCCTTTCGCGACGGTTGTGT 528
consensus_4856#1      CAGCCGAGAGCGACGGTTTCCTCTCGATCGAACACC-ACCGTCGATCCCGATCGATCATC 521
                      **  **  * *  ** * *  *     **  *  *  ** * *  ** ***  * *    

consensus_4856#0      TGCTTATGGTTTTCGTCATCGCCCCTCCCATGTTCTTTATCCTTAGTTTTGTAGGAGTCA 588
consensus_4856#1      TGAACATGCGATGCACCGAAACTCCACCGACAGCGACGAGCTTCGGGGCAATTT------ 575
                      **   ***   * *  *    * ** ** *        * * *  *     *