cluster # 4857

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4857 cluster # 4857 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4857#0 length = 646 sequences # 1
consensus_4857#1 length = 444 sequences # 1

consensus_4857#2 length = 342 sequences # 1
consensus_4857#3 length = 108 sequences # 1

consensusID : consensus_4857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence

                              [CCGGGCCCACAGCCGAAAAGTAAAGCGTGCTAAAATCGTACGAAAAATCATTACCAATACGACCGTAAGCACGAGAGTGATGCGAGCAGTGAATGTGAGCGCGAGTGTGAGCGAGAAAGCATGCAAAGCAAAAGAACATTCGCACGCCGTTGTTTCTATTGATTTCGTGCTCGGGGCGGTGCAGTAGTGGTAGTGGTGGTGGTGAGCATACACGAATTTGGAGCAGAAATGTCAAGCTGGTGAGGAAAATTTTTGCATCGAAGCAAAAGAAGTGAAGAAACGTCTCCTGCGATTTGCGAAGATGCAGCAGCACATTCCAATTGTGCATTGAGAGAAGCGTTTTTTTTGTTTGCGTGGTGAAAATAACAAGTGTACAAGTGCAATATTCCTACACATAGTAAAATAAGAAGTGTGTGTGCAGTGTGCATGTGTGTCAGTGTGTGTGTGTGTGTGCAGTGCCTGCTAAGATAAGTTTGTGTAGAAAGTGATTTGATAACAGTGTTATCAGCGGAAGATCGAATTATCCTTGCCGCGGATACACCCCCGGCAATATCCCTGTGTGTGAGCGAGCGAGCGAGCGAGAGAGAAAAAGCAAAGATTTTGCGTGTGTTTGTGTGCGTGTTTAGGGTAAAAAGCATCGATTAAT]

[+] EMBL BM632760             [CCGGGCCCACAGCCGAAAAGTAAAGCGTGCTAAAATCGTACGAAAAATCATTACCAATACGACCGTAAGCACGAGAGTGATGCGAGCAGTGAATGTGAGCGCGAGTGTGAGCGAGAAAGCATGCAAAGCAAAAGAACATTCGCACGCCGTTGTTTCTATTGATTTCGTGCTCGGGGCGGTGCAGTAGTGGTAGTGGTGGTGGTGAGCATACACGAATTTGGAGCAGAAATGTCAAGCTGGTGAGGAAAATTTTTGCATCGAAGCAAAAGAAGTGAAGAAACGTCTCCTGCGATTTGCGAAGATGCAGCAGCACATTCCAATTGTGCATTGAGAGAAGCGTTTTTTTTGTTTGCGTGGTGAAAATAACAAGTGTACAAGTGCAATATTCCTACACATAGTAAAATAAGAAGTGTGTGTGCAGTGTGCATGTGTGTCAGTGTGTGTGTGTGTGTGCAGTGCCTGCTAAGATAAGTTTGTGTAGAAAGTGATTTGATAACAGTGTTATCAGCGGAAGATCGAATTATCCTTGCCGCGGATACACCCCCGGCAATATCCCTGTGTGTGAGCGAGCGAGCGAGCGAGAGAGAAAAAGCAAAGATTTTGCGTGTGTTTGTGTGCGTGTTTAGGGTAAAAAGCATCGATTAAT]




>consensus_4857#0
CCGGGCCCACAGCCGAAAAGTAAAGCGTGCTAAAATCGTACGAAAAATCATTACCAATAC
GACCGTAAGCACGAGAGTGATGCGAGCAGTGAATGTGAGCGCGAGTGTGAGCGAGAAAGC
ATGCAAAGCAAAAGAACATTCGCACGCCGTTGTTTCTATTGATTTCGTGCTCGGGGCGGT
GCAGTAGTGGTAGTGGTGGTGGTGAGCATACACGAATTTGGAGCAGAAATGTCAAGCTGG
TGAGGAAAATTTTTGCATCGAAGCAAAAGAAGTGAAGAAACGTCTCCTGCGATTTGCGAA
GATGCAGCAGCACATTCCAATTGTGCATTGAGAGAAGCGTTTTTTTTGTTTGCGTGGTGA
AAATAACAAGTGTACAAGTGCAATATTCCTACACATAGTAAAATAAGAAGTGTGTGTGCA
GTGTGCATGTGTGTCAGTGTGTGTGTGTGTGTGCAGTGCCTGCTAAGATAAGTTTGTGTA
GAAAGTGATTTGATAACAGTGTTATCAGCGGAAGATCGAATTATCCTTGCCGCGGATACA
CCCCCGGCAATATCCCTGTGTGTGAGCGAGCGAGCGAGCGAGAGAGAAAAAGCAAAGATT
TTGCGTGTGTTTGTGTGCGTGTTTAGGGTAAAAAGCATCGATTAAT

consensusID : consensus_4857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [GCAGAATCGGCACGNNGNGGTATTGAAGCAGAAGTCATTAACCCTACGATCACTGCGTCCAATGGACTCGGAAACTATTTTCAAGTCCGTACAAAAGACTCACCATCTCGTAACGGTAGAGCAAGGATGGCCCCAGGGTGGCATTGGTTCAGAAATTTGTGCACGTATCATGGAGCACGAGACATTCTTCCACCTGGACGCTCCGATATGGCGTGTAACTGGCGCCGACGTCCCTATGCCTTACGCTAAGACGTCTTGAAGCTGCTGCTCTTCCACAAGGTACCTGATGTTGTCACTGCCGTTAATAAGGTGCTAGGTGTGAAGTAAATCTCAATCCTATCCATTCAAGTAACGTGTTCTTCGCGGCTTTGAAAGAGAGAAGATAAAAGAAAAGAAGTTNGAAGATGATTTCGATGAATAGCGGATGCATGANTTAAAGGTTCG]

[+] EMBL BX468937             [GCAGAATCGGCACGNNGNGGTATTGAAGCAGAAGTCATTAACCCTACGATCACTGCGTCCAATGGACTCGGAAACTATTTTCAAGTCCGTACAAAAGACTCACCATCTCGTAACGGTAGAGCAAGGATGGCCCCAGGGTGGCATTGGTTCAGAAATTTGTGCACGTATCATGGAGCACGAGACATTCTTCCACCTGGACGCTCCGATATGGCGTGTAACTGGCGCCGACGTCCCTATGCCTTACGCTAAGACGTCTTGAAGCTGCTGCTCTTCCACAAGGTACCTGATGTTGTCACTGCCGTTAATAAGGTGCTAGGTGTGAAGTAAATCTCAATCCTATCCATTCAAGTAACGTGTTCTTCGCGGCTTTGAAAGAGAGAAGATAAAAGAAAAGAAGTTNGAAGATGATTTCGATGAATAGCGGATGCATGANTTAAAGGTTCG]




>consensus_4857#1
GCAGAATCGGCACGNNGNGGTATTGAAGCAGAAGTCATTAACCCTACGATCACTGCGTCC
AATGGACTCGGAAACTATTTTCAAGTCCGTACAAAAGACTCACCATCTCGTAACGGTAGA
GCAAGGATGGCCCCAGGGTGGCATTGGTTCAGAAATTTGTGCACGTATCATGGAGCACGA
GACATTCTTCCACCTGGACGCTCCGATATGGCGTGTAACTGGCGCCGACGTCCCTATGCC
TTACGCTAAGACGTCTTGAAGCTGCTGCTCTTCCACAAGGTACCTGATGTTGTCACTGCC
GTTAATAAGGTGCTAGGTGTGAAGTAAATCTCAATCCTATCCATTCAAGTAACGTGTTCT
TCGCGGCTTTGAAAGAGAGAAGATAAAAGAAAAGAAGTTNGAAGATGATTTCGATGAATA
GCGGATGCATGANTTAAAGGTTCG

consensusID : consensus_4857#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [GGGCGATGCGAAGGACGCGGGCAAGGCGGTAGAGGCTGGCGTGAAGGCACTGAAGTCGCTGTCGGTGAGCGACGCGGAAGTGGCACGCGGAAAGGCGTCGGCCCTGGCGGCCGCGGCCGAGTACACCGAGAACCAGAGCACGCGGCTCCATCAGCGGGGCGAGGAGTCGGCCCTGCTCGGACAGGTGTACAAGAAGAGAGACCTGCTGGCTGCCGACAAGGCCGGCACCACGGGGGACGTCCAAGCTGCCGCCAGGAAGGGGGCCTCCAGCAAACTGGCCATCGGTGCCGCCGGCAAACTGAGCCACGTGCCGCACCTTGGCGAACTGCACTAAACCCGCCA]

[+] EMBL BX609655             [GGGCGATGCGAAGGACGCGGGCAAGGCGGTAGAGGCTGGCGTGAAGGCACTGAAGTCGCTGTCGGTGAGCGACGCGGAAGTGGCACGCGGAAAGGCGTCGGCCCTGGCGGCCGCGGCCGAGTACACCGAGAACCAGAGCACGCGGCTCCATCAGCGGGGCGAGGAGTCGGCCCTGCTCGGACAGGTGTACAAGAAGAGAGACCTGCTGGCTGCCGACAAGGCCGGCACCACGGGGGACGTCCAAGCTGCCGCCAGGAAGGGGGCCTCCAGCAAACTGGCCATCGGTGCCGCCGGCAAACTGAGCCACGTGCCGCACCTTGGCGAACTGCACTAAACCCGCCA]




>consensus_4857#2
GGGCGATGCGAAGGACGCGGGCAAGGCGGTAGAGGCTGGCGTGAAGGCACTGAAGTCGCT
GTCGGTGAGCGACGCGGAAGTGGCACGCGGAAAGGCGTCGGCCCTGGCGGCCGCGGCCGA
GTACACCGAGAACCAGAGCACGCGGCTCCATCAGCGGGGCGAGGAGTCGGCCCTGCTCGG
ACAGGTGTACAAGAAGAGAGACCTGCTGGCTGCCGACAAGGCCGGCACCACGGGGGACGT
CCAAGCTGCCGCCAGGAAGGGGGCCTCCAGCAAACTGGCCATCGGTGCCGCCGGCAAACT
GAGCCACGTGCCGCACCTTGGCGAACTGCACTAAACCCGCCA

consensusID : consensus_4857#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 108
fasta sequence

                              [CAGTAAGAGTAGAAGAGAGTTGGAGGAAGATAGGGAGTGTGGGAGAGGGAGAGGGAACAACAATAACAACACTACATAAACATAGTAGATAGGTTACTACTTAAGGAA]

[+] EMBL BX613060             [CAGTAAGAGTAGAAGAGAGTTGGAGGAAGATAGGGAGTGTGGGAGAGGGAGAGGGAACAACAATAACAACACTACATAAACATAGTAGATAGGTTACTACTTAAGGAA]




>consensus_4857#3
CAGTAAGAGTAGAAGAGAGTTGGAGGAAGATAGGGAGTGTGGGAGAGGGAGAGGGAACAA
CAATAACAACACTACATAAACATAGTAGATAGGTTACTACTTAAGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4857#0      ---CCGGGCCCACAGCCGAAAAGTAAAGCGTGCTAAAATCGTACGAAAAATCATTACCAA 57
consensus_4857#3      ------------------------------------------------------------
consensus_4857#1      ----------------GCAGAATCGGCACGNNGNGGTATTGAAGCAGAAGTCATTAACCC 44
consensus_4857#2      GGGCGATGCGAAGGACGCGGGCAAGGCGGTAGAGGCTGGCGTGAAGGCACTGAAGTCGCT 60
                                                                                  

consensus_4857#0      TACGACCGTAAGCACGAGAGTGATGCGAGCAGTGAATGTGAGCGCGAGTGT-GAGCGAGA 116
consensus_4857#3      -----CAGTAAGAGTAGAAGAGAGTTGGAGGAAGATAGGGAGTGTGGGAGA-GGGAGAGG 54
consensus_4857#1      TACGATCACT-GCGTCCAATGGACTCGGAAACTATTTTCAAGTCCGTACAA-AAGACTCA 102
consensus_4857#2      GTCGGTGAGCGACGCGGAAGTGGCACGCGGAAAGGCGTCGGCCCTGGCGGCCGCGGCCGA 120
                                        *  *    *                  *        *     

consensus_4857#0      AAGCATGCAAAGCAAAAGAACATTCGCACGCCGTTGTTTCTATTGATT--TCGTGCTCGG 174
consensus_4857#3      GAACAACAATAACAACACTACATAAACATA--GTAG-----ATAGGTT--AC-TACTTAA 104
consensus_4857#1      CCATCTC-GTAACGGTAGAGCAAGGATGGCCCCAGGGTGGCATTGGTT--CAGAAATTTG 159
consensus_4857#2      GTACACCGAGAACCAGAGCACGCGGCTCCATCAGCGGGGCGAGGAGTCGGCCCTGCTCGG 180
                                * *   *   *              *     *    *         *   

consensus_4857#0      GGCGGTGCAGTAGTGGTAGTGGTGGTGGTGAGCATACACGAATTTGGAGCAGAAATGTCA 234
consensus_4857#3      GGAA-------------------------------------------------------- 108
consensus_4857#1      TGCA---CGTATCATGGAGCACGAGACATTCTTCCACCTGGACGCTCCGATATGGCGTGT 216
consensus_4857#2      ACAGGTGTACAAGAAGAGAGACCTGCTGGCTGCCGACAAGGCCGGCACCACGGGGGACGT 240
                                                                                  

consensus_4857#0      AGCTGGTGAGGAAAATTTTTGCATCGAAGCAAAAGAAGTGAAGAAACGTCTCCTGCGATT 294
consensus_4857#3      ------------------------------------------------------------
consensus_4857#1      AACTGGCGCCGACGTCCCTATGCCTTACGCTAAGACGTCTTGAAGCTGCTGCTCTTCCAC 276
consensus_4857#2      CCAAGCTGCCGCCAGGAAGGGGGCCTCCAGCAAACTGGCC-ATCGGTGCCGCCGGCAAAC 299
                                                                                  

consensus_4857#0      TGCGAAGATGCAGCAGCACATTCCAATTGTGCATTGAGAGAAGCGTTTTTTTTGTTTGCG 354
consensus_4857#3      ------------------------------------------------------------
consensus_4857#1      AAGGTACCTGATGTTGTCACTGCCGTTAATAAGGTGCTAGGTGTGAAGTAAATCTCAATC 336
consensus_4857#2      TGAGCCACGTGCCGCACCTTGGCGAACTGCACTAAACCCGCCA----------------- 342
                                                                                  

consensus_4857#0      TGGTGAAAATAACAAGTGTACAAGTGCAATATTCCTACACATAGTAAAATAAGAAGTGTG 414
consensus_4857#3      ------------------------------------------------------------
consensus_4857#1      CTATCCATTCAAGTAACGTGTTCTTCGCGGCTTTGAAAGAGAGAAGATAAAAGAAAAGAA 396
consensus_4857#2      ------------------------------------------------------------
                                                                                  

consensus_4857#0      TGTGCAGTGTGCATGTGTGTCAGTGTGTGTGTGTGTGTGCAGTGCCTGCTAAGATAAGTT 474
consensus_4857#3      ------------------------------------------------------------
consensus_4857#1      GTTNGAAGATGATTTCGATGAATAGCGGATGCATGANTTAAAGGTTCG------------ 444
consensus_4857#2      ------------------------------------------------------------
                                                                                  

consensus_4857#0      TGTGTAGAAAGTGATTTGATAACAGTGTTATCAGCGGAAGATCGAATTATCCTTGCCGCG 534
consensus_4857#3      ------------------------------------------------------------
consensus_4857#1      ------------------------------------------------------------
consensus_4857#2      ------------------------------------------------------------
                                                                                  

consensus_4857#0      GATACACCCCCGGCAATATCCCTGTGTGTGAGCGAGCGAGCGAGCGAGAGAGAAAAAGCA 594
consensus_4857#3      ------------------------------------------------------------
consensus_4857#1      ------------------------------------------------------------
consensus_4857#2      ------------------------------------------------------------
                                                                                  

consensus_4857#0      AAGATTTTGCGTGTGTTTGTGTGCGTGTTTAGGGTAAAAAGCATCGATTAAT 646
consensus_4857#3      ----------------------------------------------------
consensus_4857#1      ----------------------------------------------------
consensus_4857#2      ----------------------------------------------------