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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1039 fasta sequence
[CGTTAACAGTGCGGACGTACATTNGACATTGGTCGACACTACTTTTCTATTCCCAGTTGTTCGAATTAGCAACCAGCACCAGCACCACTTTGCAAAGTGAGTTAAACCCAGGAAACGGAAGCGCTACAAACTACAAAATGCCATACACAATGAAGCGAGCGCAAAATGTCGTGACGATTACGACAAGTACGACTTCGACGATGGCAGAANGTCATCCACTCCGAGGCACAGTGGCAANCATGGCACAGATCGGAGGGGGAATGCGCATCTAGACCAANACCATTAGGATCCGGGCGGGCCATANCGACGCCAGATATGTTGACACCCGCTGAGACANTACGGCATCAGAAGCAAGCAAAGTCTGCGCCGACAGTAATCTCACCGGGAGCTCGGACGTGTGACTTCCCGTCGCGAATTGTGGCTGTGGGCAGTGTNTTGTCGAATGATGTGGTTCCTAAATCCNGGGCCAAGTGNNGTNCCAATGGTAGANCCGAGAACAANCCGGCACGNTTCTCCTTAAAAAGGGGCGGATACNGGAGTGCTTGTGATGAACCCCCCTNGGGCCANATGTAATAGGAGCNAACCACTGAAGCCAGAAACTTTTCAATACCACGCTTNGGGCACTGANGCCCTTACNNCNCGTGTGAATAANGAGATTCGCATTCCACACCACTATTNCATNTACCAGTCCNCANGACCNTTTGCGCATGCGCGATAACCNAAAGNGTAGCNGAGGCAANANAGNAAAGNAGGAGNCCCGNGAAGACGGGNACANTAACACCAGNAAGACACAGCCAAGGAAAATAGACAACCCCCCAGGATGGGTAAGACNACCCAAAAAGGTCAAACAGNATCNNAAAAAGAGCANAACACATAGCANCGCACAACNGCAAACNAGGACACGCCCACAACCGGAACATGCGACAAAAACATGGCANAGCAGCAAGCACTAACAANCGGCGCACAGAACNCAGACAGGAAACGGAGGAAAAAAAACAAANAAGAAAAACCACGCAGANACCGNAGGNTGGAGGAATAC]
[+] EMBL AL696501 [CGTTAACAGTGCGGACGTACATTNGACATTGGTCGACACTACTTTTCTATTCCCAGTTGTTCGAATTAGCAACCAGCACCAGCACCACTTTGCAAAGTGAGTTAAACCCAGGAAACGGAAGCGCTACAAACTACAAAATGCCATACACAATGAAGCGAGCGCAAAATGTCGTGACGATTACGACAAGTACGACTTCGACGATGGCAGAANGTCATCCACTCCGAGGCACAGTGGCAANCATGGCACAGATCGGAGGGGGAATGCGCATCTAGACCAANACCATTAGGATCCGGGCGGGCCATANCGACGCCAGATATGTTGACACCCGCTGAGACANTACGGCATCAGAAGCAAGCAAAGTCTGCGCCGACAGTAATCTCACCGGGAGCTCGGACGTGTGACTTCCCGTCGCGAATTGTGGCTGTGGGCAGTGTNTTGTCGAATGATGTGGTTCCTAAATCCNGGGCCAAGTGNNGTNCCAATGGTAGANCCGAGAACAANCCGGCACGNTTCTCCTTAAAAAGGGGCGGATACNGGAGTGCTTGTGATGAACCCCCCTNGGGCCANATGTAATAGGAGCNAACCACTGAAGCCAGAAACTTTTCAATACCACGCTTNGGGCACTGANGCCCTTACNNCNCGTGTGAATAANGAGATTCGCATTCCACACCACTATTNCATNTACCAGTCCNCANGACCNTTTGCGCATGCGCGATAACCNAAAGNGTAGCNGAGGCAANANAGNAAAGNAGGAGNCCCGNGAAGACGGGNACANTAACACCAGNAAGACACAGCCAAGGAAAATAGACAACCCCCCAGGATGGGTAAGACNACCCAAAAAGGTCAAACAGNATCNNAAAAAGAGCANAACACATAGCANCGCACAACNGCAAACNAGGACACGCCCACAACCGGAACATGCGACAAAAACATGGCANAGCAGCAAGCACTAACAANCGGCGCACAGAACNCAGACAGGAAACGGAGGAAAAAAAACAAANAAGAAAAACCACGCAGANACCGNAGGNTGGAGGAATAC]
consensusID : consensus_4872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 896 fasta sequence
[GCAAGAATCGCGCACGAGGTGTGGCAGTGTTGTGTTCCCGACGATTTTGAGTGTGAGTGAAGTTTTCTCCTCATTGTACTGTTTTTTTTTTATGATTCGTTCTGCTCAGCAGAAGTGTTTAATCAGTTTATAGCAAGGGAAACAACAAAAACATTTGAGTATTGGAGACTAATCTACAAAATAAATCAAAATGCTTACTGGATACCGGCTGTTGGCGGACTCGTTCCACGCGTTTGCAGTTCTCTATTTGTTGTTCAACATTTGGCGCACCAAGTCCTGCTTTGGCGTATCGGGGAAAACACAAATCCTGTACATTACGGTATTTGCGACGCGCTATGCCGACCTGGTCACCTTTCCAGCCACCTACAGTGTCTATAATGTGATGATGAAGACGCTTTTCATCAGCGTAACGCTTATAACCGTGCTGGTCATGCACAGCGTCTATCGCAAAACGTATGACCGCGAAAATGATACCTTCTACAATGAGTTTCTCATATTGCCATGCTTTGTGATCGCTCTGTTTATCAACTATCGTATGGAAGCGTTCGAAATATTGTGGTCCTTTTCGATCATGCTCGAAGCAGTCGCGTATACTGCCGGCAAATGGATTTAATCTGCAAAAACGTTTCACGGTGG-AGCCAT-GGTTCAAGTGTTATCTGTTGCTGCTCGGCTCGTACCGCGCGCTCTACGTATTGCATTGGGTCGATCGGGTACGGGCAGTACGGGCTCTTAACGGAACCCAATTAAGGCATTTATANTTCCGGGGTTGGGTATTCCAAACCAGGTACTCNGTTGTTGGTACCTGGCCTTTAGCGGGGNGCGAAATTGGCAGAACCCCTTTANAACACTTCGAGGAAACGCCATTTGTTACCGGGCCCAGTACACGATTTGGGTAA]
[+] EMBL BX467440 [GCAAGAATCGCGCACGAGGTGTGGCAGTGTTGTGTTCCCGACGATTTTGAGTGTGAGTGAAGTTTTCTCCTCATTGTACTGTTTTTTTTTTATGATTCGTTCTGCTCAGCAGAAGTGTTTAATCAGTTTATAGCAAGGGAAACAACAAAAACATTTGAGTATTGGAGACTAATCTACAAAATAAATCAAAATGCTTACTGGATACCGGCTGTTGGCGGACTCGTTCCACGCGTTTGCAGTTCTCTATTTGTTGTTCAACATTTGGCGCACCAAGTCCTGCTTTGGCGTATCGGGGAAAACACAAATCCTGTACATTACGGTATTTGCGACGCGCTATGCCGACCTGGTCACCTTTCCAGCCACCTACAGTGTCTATAATGTGATGATGAAGACGCTTTTCATCAGCGTAACGCTTATAACCGTGCTGGTCATGCACAGCGTCTATCGCAAAACGTATGACCGCGAAAATGATACCTTCTACAATGAGTTTCTCATATTGCCATGCTTTGTGATCGCTCTGTTTATCAACTATCGTATGGAAGCGTTCGAAATATTGTGGTCCTTTTCGATCATGCTCGAAGCAGTCGCGTATACTGCCGGCAAATGGATTTAATCTGCAAAAACGTTTCACGGTGG AGCCAT GGTTCAAGTGTTATCTGTTGCTGCTCGGCTCGTACCGCGCGCTCTACGTATTGCATTGGGTCGATCGGGTACGGGCAGTACGGGCTCTTAACGGAACCCAATTAAGGCATTTATANTTCCGGGGTTGGGTATTCCAAACCAGGTACTCNGTTGTTGGTACCTGGCCTTTAGCGGGGNGCGAAATTGGCAGAACCCCTTTANAACACTTCGAGGAAACGCCATTTGTTACCGGGCCCAGTACACGATTTGGGTAA]
[+] EMBL BM575021 [ ccgTGTGTT CCGACGATTTTGAGTGTGAGTGAAGTTTTCTCCTCATTGTACTG TTTTTTCTATGTTTCGTTCGGTTCAGCAGAAGTGTTTAATCAGTTTATAGCAAGGGAAACAACAAAAACATTTGAGTATTGGAGACTAATCTACAAAATAAATCAAAATGCTTACTGGATACCGGCTGTTGGCGGACTCGTTCCACGCGTTTGCAGTTCTCTATTTGCTGTTCAACATTTGGCGCACCAAATCCTGCTTTGGCGTATCGGGGAAAACACAAATCCTGTACATTACGGTATTTGCGACGCGCTATGCCGACCTGGTCACCTTTCCAGCCACCTACAGTGTCTATAATGTGATGATGAAGACGCTTTTCATCAGCGTAACGCTAATAACCGTGCTGGTCATGCACAGCGTCTATCGCAAAACGTATGACCGCGAAAATGATACCTTCTACAATGAGTTTCTCATATTGCCATGCTTTGTGATCGCTCTGTTTGTCAACTATCGTATGGAAGCGTTCGAAATATTGTGGTCCTTTTCGATCATGCTCGAAGCAGTCGC TATACTGCC GCAAATGGATTTAATCTGC AAAACGTTTCAC GTGGCAGCCATGGGTTCAAGTGGTATCTGTTGCTGCTCGGCTC ]
consensusID : consensus_4872#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGTTTTCGGAGTACAAAGGACAAAGGATTCGGAGAATTTAAACATTCGCAATAAAATGACTGGAAGAATATTTTTCTTACGATATCCCATGCTGTATGATTATTTTGTGCTCGAACTAGAAAAGGCTAGTAAAATTATAATTCAGGGTAGTAGAAGCAAAAAGCTACATCCCCTATTACTGCTTTTGAGCCGGCTTTATCCATCGGCCCTGGAGGGTAGTGAGTCAAACCTGAAACTTTCGAGATTCGTTCCTCTAGTATCTATTTGCTCCGGTTGTGCAGAACTACAAACTCGTTACTTAGCGGCAAAGATAATATCTATCATCGTTTCTCCGGATCTTATGTTTGATCGCATTTGTTTATTATTGGAAAGTTTAAATCGTTCCAATAATCGCAATGTGAATCCTAACTCGTTGCACGGAGCATTGTTGCAGATTTTATGCCTTATAAAAACGAAAAATCCCGGCTTAGTGGCTGCAGCAACATCGAGCGGACAGCTGAATAATTGGATTGAGCTGTACACAGCTATTTCTAATTATCTGTTCGAGGTGAAACCCAATTTTATTATTTACAGCACCATATTGGATATATTGCTGGAAATTTTGGCACGGTGCCAACATATAATCATCGCAGAAGATGACCAGTTTATAGACGATCTGAGTAACATT]
[+] EMBL BM655097 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGTTTTCGGAGTACAAAGGACAAAGGATTCGGAGAATTTAAACATTCGCAATAAAATGACTGGAAGAATATTTTTCTTACGATATCCCATGCTGTATGATTATTTTGTGCTCGAACTAGAAAAGGCTAGTAAAATTATAATTCAGGGTAGTAGAAGCAAAAAGCTACATCCCCTATTACTGCTTTTGAGCCGGCTTTATCCATCGGCCCTGGAGGGTAGTGAGTCAAACCTGAAACTTTCGAGATTCGTTCCTCTAGTATCTATTTGCTCCGGTTGTGCAGAACTACAAACTCGTTACTTAGCGGCAAAGATAATATCTATCATCGTTTCTCCGGATCTTATGTTTGATCGCATTTGTTTATTATTGGAAAGTTTAAATCGTTCCAATAATCGCAATGTGAATCCTAACTCGTTGCACGGAGCATTGTTGCAGATTTTATGCCTTATAAAAACGAAAAATCCCGGCTTAGTGGCTGCAGCAACATCGAGCGGACAGCTGAATAATTGGATTGAGCTGTACACAGCTATTTCTAATTATCTGTTCGAGGTGAAACCCAATTTTATTATTTACAGCACCATATTGGATATATTGCTGGAAATTTTGGCACGGTGCCAACATATAATCATCGCAGAAGATGACCAGTTTATAGACGATCTGAGTAACATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4872#1 --------------GCAAGAATCGCGCACGAGGTGTGGC-AGTGTTGTGTTCCCGACGAT 45
consensus_4872#0 CGTTAACAGTGCGGACGTACATTNGACATTGGTCGACACTACTTTTCTATTCCCAGTTGT 60
consensus_4872#2 ------------------------------------------------------------
consensus_4872#1 TTTGAGT-GTGAGTGAAGTTTTCTCCTCATTGTACTGTTTTTTTTTTAT--------GAT 96
consensus_4872#0 TCGAATTAGCAACCAGCACCAGCACCACTTTGCAAAGTGAGTTAAACCCAGGAAACGGAA 120
consensus_4872#2 ------------------------------------------------------------
consensus_4872#1 TCGTTCTGCTCAGCAGAA----GTGTTTAAT----------CAGTTTATAGCAAGGGAAA 142
consensus_4872#0 GCGCTACAAACTACAAAATGCCATACACAATGAAGCGAGCGCAAAATGTCGTGACGATTA 180
consensus_4872#2 ------------------------------------------------CCGCCCACGCGT 12
*
consensus_4872#1 CAACAAAAACA--TTTGAGTATTGGAGACTAATCTACAAAATAAATCAAAATGCTTACTG 200
consensus_4872#0 CGACAAGTACGACTTCGACGATGGCAGAANGTCATCCACTCCGAGGCACAGTGGCAANCA 240
consensus_4872#2 CCGCCCACGCGTCCGCCCACGCGTCCGGTGTTTTCGGAGTACAAAGGACAAAGGATTCGG 72
* * * * * * * * *
consensus_4872#1 -GATACCGGCTGTTGGCGGA--------CTCGTTCCACGCGTTTGCAGTTCTCTATTTGT 251
consensus_4872#0 TGGCACAGATCGGAGGGGGAATGCGCATCTAGACCAANACCATTA-GGATCCGGGCGGGC 299
consensus_4872#2 AGAATTTAAACATTCGCAA----------TAAAATGACTGGAAGAATATTTTTCTTACGA 122
* * * * * *
consensus_4872#1 TGT-TCAACATTTGGCGCACCAAGTCCTGCTTTGGCGTATCGG-----GGAAAACACAAA 305
consensus_4872#0 CATANCGACGCCAGATATGTTGACACCCGCTGAGACANTACGGCATCAGAAGCAAGCAAA 359
consensus_4872#2 TAT-CCCATGCTGTATG-ATTATTTTGTGCTCGAACTAGAAAAGGCTAGTAAAATTATAA 180
* * * *** * * * * **
consensus_4872#1 TCCTGTACATTACGGTATTTGCGACGCGCTATGCCGACCTGGTCACCTTTC-C-AGCCAC 363
consensus_4872#0 GTCTGCGC-CGACAGTAATCTCACCGGG--AGCTCGGACGTGTGACTTCCCGT-CGCGAA 415
consensus_4872#2 TTCAGGGT-----AGTAGAAGCAAAAAGCTACATC--CCCTATTACTGCTTTTGAGCCGG 233
* * *** * * * * * * ** **
consensus_4872#1 CTACAG-TGTCTATAATGTGATGATGAA-GACGCTTTTCATCAGCGTAACGCTTATAACC 421
consensus_4872#0 TTGTGGCTGTGGGCAGTGTNTTGTCGAATGATGTGGTTCCTAAATCCNGGGCCAAGTGNN 475
consensus_4872#2 CTTTATCCATCGGCCCTGGAGGGT--AGTGAGTCAAACCTGAAACTT----TCGAGATTC 287
* * ** * * ** * * *
consensus_4872#1 GTGCTGGTCAT-GCACAGCGTCTATCGCAAAACGTATGACCGCGAAAATG-----ATACC 475
consensus_4872#0 GTNCCAATGGTAGANCCGAGAACAANCCGGCACGNTTCTCCTTAAAAAGGGGCGGATACN 535
consensus_4872#2 GTTCCTCTAGT---ATCTATTTGCTCCGGTTGTGCAGAACTACAAACTCG-----TTACT 339
** * * * * * ** * ***
consensus_4872#1 T-----TCTACAATGAGTTTCTCATATTGCCATGCTTTGTG-------ATCGCTCTGTTT 523
consensus_4872#0 GGAGTGCTTGTGATGAACCCCCC-TNGGGCCANATGTAATAGGAGCNAACCACTGAAGCC 594
consensus_4872#2 TA----GCGGCAAAGATAATATC-TATCATCGTTTCTCCGG-------ATC-TTATGTTT 386
* ** * * * * * * *
consensus_4872#1 ATCAACTATCGTATGGAAGCGTTCGAAATATTGTGGTCCTTTTCGATCATGCTCG-AAGC 582
consensus_4872#0 AGAAACTTTTCAATACCA-CGCTTNGGGCACTGANGCCCTTACNNCNCGTGTGAATAANG 653
consensus_4872#2 GATCGCATTTGTTTATTA----TTGGAAAGTTTAAATCGTT-CCAATAATCGCAATGTGA 441
* * * * * * * ** *
consensus_4872#1 AGTCGCGTATACTGC-CGGCAAATGGATTTA---ATCTGCAAAAACGTTTCACGGTGGAG 638
consensus_4872#0 AGATTCGCATTCCACACCACTATTNCATNTACCAGTCCNCANGACCNTTT-GCGCATGCG 712
consensus_4872#2 ATCCTAACTCGTTGCACGGAGCATTGTTGCA---GATTTTATG--CCTTATAAAAACGAA 496
* * * * * * * * ** *
consensus_4872#1 CCATGGTTCAAGTGTTATCTGTTGCTGCTCGGCTCGTACCGCGCGCTCTACGTATTGCAT 698
consensus_4872#0 CGATAACCNAAAGNGTAGCNGAGGCAANANAGNAAAGNAGGAGNCCCGNGAAGACGGGNA 772
consensus_4872#2 AAATC-CCGGCTTAGTGGCTGCAGCAACATCGAGCGGACAGCTGAATAATTGGATTGAGC 555
** * * * ** * * * *
consensus_4872#1 TGGGTCGATCGGGTACGGGCAGT-ACGGGCTCTTAACGGAACCCAATTAAGGCATTTATA 757
consensus_4872#0 CANTAACACCAGNAAGACACAGCCAAGGAAAATAGACAACCCCCCAGGATGGGTAAGACN 832
consensus_4872#2 TGTACA---CAGCTATTTCTAATTATCTGTTCGAGGTGAAACCCAATTTTATTATTTACA 612
* * * * * *** * *
consensus_4872#1 NTTCCGG--GGTTGG---GTATTCCAAACCAGGTACTCNGT-TGTTGGTACCTGGCCTTT 811
consensus_4872#0 ACCCAAAAAGGTCAAACAGNATCNNAAAAAGAGCANAACACATAGCANCGCACAACNGCA 892
consensus_4872#2 GCACCAT---ATTGGAT-ATATTGCTGGAAATTTTGGCACGGTGCCAACATATAATCATC 668
* * ** *
consensus_4872#1 AGCGGGGN-GCGAAATTGGCAGAACCCCTTTANAACACTTCGAGGAAACGCCATTTGTTA 870
consensus_4872#0 AACNAGGACACGCCCACAACCGGAACATGCGACAAAAACATGGCANAGCAGCAAGCACTA 952
consensus_4872#2 GCAGAAGATGACCAGTTTATAGACGATCTGAGTAACATT--------------------- 707
* * ** *
consensus_4872#1 CCGGGCCCAGTACACGATTTGGGTAA---------------------------------- 896
consensus_4872#0 ACAANCGGCGCACAGAACNCAGACAGGAAACGGAGGAAAAAAAACAAANAAGAAAAACCA 1012
consensus_4872#2 ------------------------------------------------------------
consensus_4872#1 ---------------------------
consensus_4872#0 CGCAGANACCGNAGGNTGGAGGAATAC 1039
consensus_4872#2 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||